RLG00000030814

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
68031725 .. 68033595
1871 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030814

Sequence Viewer

Length: 693 bp
ATGAAACAGAGGAGAGACTTGTTAGTTTATGTGTTCCTCTTTGCAACTGTGTTGGACCTTAAAACTCAACTGGGTTATTTCAAGAAGGTGGAGAAGCAGTTGAGGCACAGACTAGGTGAAGCAGAAGCTCACACATTGCTGTCCGAAGCTGTTTACTTGATTGCCATCGGAGGCAGTGATTACTCTTTCCCATTCAAAACGAATTCAAGTTTGTTCGAGTCTCACTCACATGAAGAATATGTTGGCATGGTGACAGGAAACCTAACAAATGTGATCAAAGAAATATACAAGAAAGGAGGAAGAAAATTTGGGATTAAAGGCATAGGGAATTGGGGTTGTATACCGGGCTTCAGAACAGCTAAACCAGGAAATACAAGCACCTGTAATGAAGAAGTAAATGCACTTTCAAAACTCCACAATACGGTACTTGCTAAAGCCCTCCTGGAGCTGAAAGGACAGCTCCACGACTTCATATACTCGAATCCAAATTTCTACTCTTACGCAAATGACGTAGTTCATAATCCATCAAAACATGGTTTCAAGGAAGCAGAGATGGCATGCTGTGGCTCTGGTCCATACAGAAGAATTAATAGCTGCGGAGGGAAGCGAGGTGCGACCGAGTATCAGTTATGTGACAATGTTACTGACCATGTCTACTTTGATTCCAGTCATCCCACAGAAAGGTATAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

231

Amino Acids

25.85

Weight (kDa)

8.78

Isoelectric Point (pI)

24.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 16 - 228 5.3e-10 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 340, 654
AciI CCGC 1 cut(s) 597
AcsI RAATTY 3 cut(s) 202, 305, 487
AcuI CTGAAG 1 cut(s) 334
AfaI GTAC 1 cut(s) 426
AfiI CCNNNNNNNGG 2 cut(s) 421, 681
AgsI TTSAA 5 cut(s) 82, 196, 207, 408, 541
AjnI CCWGG 2 cut(s) 364, 441
AjuI GAANNNNNNNTTGG 2 cut(s) 225, 257
AluBI AGCT 6 cut(s) 128, 149, 359, 448, 460, 594
AluI AGCT 6 cut(s) 128, 149, 359, 448, 460, 594
Alw26I GTCTC 2 cut(s) 9, 225
ApeKI GCWGC 1 cut(s) 594
ApoI RAATTY 3 cut(s) 202, 305, 487
AseI ATTAAT 1 cut(s) 588
AspS9I GGNCC 2 cut(s) 55, 572
AsuC2I CCSGG 1 cut(s) 345
AsuHPI GGTGA 2 cut(s) 128, 262
AvaII GGWCC 2 cut(s) 55, 572
BbvI GCAGC 1 cut(s) 581
BccI CCATC 3 cut(s) 173, 532, 547
BciT130I CCWGG 2 cut(s) 366, 443
BclI TGATCA 1 cut(s) 273
BcnI CCSGG 1 cut(s) 345
BcoDI GTCTC 2 cut(s) 9, 225
BfaI CTAG 2 cut(s) 113, 691
BisI GCNGC 1 cut(s) 595
BlsI GCNGC 1 cut(s) 596
Bme1390I CCNGG 3 cut(s) 345, 366, 443
Bme18I GGWCC 2 cut(s) 55, 572
BmgT120I GGNCC 2 cut(s) 55, 572
BmrFI CCNGG 3 cut(s) 345, 366, 443
BmrI ACTGGG 1 cut(s) 80
BmuI ACTGGG 1 cut(s) 80
BplI GAGNNNNNCTC 2 cut(s) 209, 241
BpmI CTGGAG 1 cut(s) 464
BpuMI CCSGG 1 cut(s) 345
BsaBI GATNNNNATC 1 cut(s) 164
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 2 cut(s) 421, 681
Bse1I ACTGG 2 cut(s) 75, 666
Bse3DI GCAATG 1 cut(s) 134
Bse8I GATNNNNATC 1 cut(s) 164
BseBI CCWGG 2 cut(s) 366, 443
BseGI GGATG 1 cut(s) 670
BseJI GATNNNNATC 1 cut(s) 164
BseLI CCNNNNNNNGG 2 cut(s) 421, 681
BseMI GCAATG 1 cut(s) 134
BseNI ACTGG 2 cut(s) 75, 666
BseRI GAGGAG 1 cut(s) 25
BseXI GCAGC 1 cut(s) 581
Bsh1285I CGRYCG 1 cut(s) 618
BsiEI CGRYCG 1 cut(s) 618
BsiSI CCGG 1 cut(s) 344
BslI CCNNNNNNNGG 2 cut(s) 421, 681
BsmAI GTCTC 2 cut(s) 9, 225
Bsp143I GATC 1 cut(s) 273
BspACI CCGC 1 cut(s) 597
BsrDI GCAATG 1 cut(s) 134
BsrI ACTGG 2 cut(s) 75, 666
BssMI GATC 1 cut(s) 273
BssNAI GTATAC 1 cut(s) 341
Bst1107I GTATAC 1 cut(s) 341
Bst2UI CCWGG 2 cut(s) 366, 443
Bst4CI ACNGT 2 cut(s) 49, 424
BstC8I GCNNGC 1 cut(s) 559
BstF5I GGATG 1 cut(s) 670
BstKTI GATC 1 cut(s) 276
BstMAI GTCTC 2 cut(s) 9, 225
BstMBI GATC 1 cut(s) 273
BstMCI CGRYCG 1 cut(s) 618
BstMWI GCNNNNNNNGC 2 cut(s) 103, 554
BstNI CCWGG 2 cut(s) 366, 443
BstNSI RCATGY 1 cut(s) 561
BstSCI CCNGG 3 cut(s) 343, 364, 441
BstV1I GCAGC 1 cut(s) 581
BstZ17I GTATAC 1 cut(s) 341
BtsCI GGATG 1 cut(s) 670
BtsI GCAGTG 1 cut(s) 181
BtsIMutI CAGTG 1 cut(s) 181
Cac8I GCNNGC 1 cut(s) 559
Cfr13I GGNCC 2 cut(s) 55, 572
Csp6I GTAC 1 cut(s) 425
CviAII CATG 5 cut(s) 230, 247, 533, 558, 650
CviJI RGCY 9 cut(s) 128, 149, 348, 359, 437, 448, 460, 567, 594
CviKI_1 RGCY 9 cut(s) 128, 149, 348, 359, 437, 448, 460, 567, 594
CviQI GTAC 1 cut(s) 425
DpnI GATC 1 cut(s) 275
DpnII GATC 1 cut(s) 273
Eco47I GGWCC 2 cut(s) 55, 572
Eco57I CTGAAG 1 cut(s) 334
EcoRI GAATTC 1 cut(s) 202
EcoRII CCWGG 2 cut(s) 364, 441
FaeI CATG 5 cut(s) 233, 250, 536, 561, 653
FatI CATG 5 cut(s) 229, 246, 532, 557, 649
FbaI TGATCA 1 cut(s) 273
FblI GTMKAC 2 cut(s) 340, 654
Fnu4HI GCNGC 1 cut(s) 595
FokI GGATG 1 cut(s) 657
Fsp4HI GCNGC 1 cut(s) 595
FspBI CTAG 2 cut(s) 113, 691
GluI GCNGC 1 cut(s) 595
GsuI CTGGAG 1 cut(s) 464
HapII CCGG 1 cut(s) 344
Hin1II CATG 5 cut(s) 233, 250, 536, 561, 653
HinfI GANTC 3 cut(s) 218, 481, 662
HpaII CCGG 1 cut(s) 344
HphI GGTGA 2 cut(s) 128, 262
Hpy166II GTNNAC 3 cut(s) 154, 341, 655
Hpy188I TCNGA 3 cut(s) 145, 170, 353
Hpy188III TCNNGA 1 cut(s) 82
Hpy8I GTNNAC 3 cut(s) 154, 341, 655
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 2 cut(s) 49, 424
HpyCH4IV ACGT 1 cut(s) 510
HpyCH4V TGCA 2 cut(s) 44, 401
HpyF10VI GCNNNNNNNGC 2 cut(s) 103, 554
HpySE526I ACGT 1 cut(s) 510
Hsp92II CATG 5 cut(s) 233, 250, 536, 561, 653
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 1 cut(s) 273
LmnI GCTCC 2 cut(s) 445, 465
Lsp1109I GCAGC 1 cut(s) 581
MaeI CTAG 2 cut(s) 113, 691
MaeII ACGT 1 cut(s) 510
MaeIII GTNAC 3 cut(s) 250, 632, 640
MalI GATC 1 cut(s) 275
MboI GATC 1 cut(s) 273
MboII GAAGA 4 cut(s) 245, 312, 401, 594
MluCI AATT 5 cut(s) 202, 305, 328, 487, 585
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 8 cut(s) 3, 47, 96, 164, 290, 449, 593, 602
MseI TTAA 3 cut(s) 60, 315, 588
MslI CAYNNNNRTG 1 cut(s) 228
MspI CCGG 1 cut(s) 344
MspR9I CCNGG 3 cut(s) 345, 366, 443
MvaI CCWGG 2 cut(s) 366, 443
MwoI GCNNNNNNNGC 2 cut(s) 103, 554
NciI CCSGG 1 cut(s) 345
NdeII GATC 1 cut(s) 273
NlaIII CATG 5 cut(s) 233, 250, 536, 561, 653
NmuCI GTSAC 2 cut(s) 250, 632
NspI RCATGY 1 cut(s) 561
PaeI GCATGC 1 cut(s) 561
PcsI WCGNNNNNNNCGW 1 cut(s) 507
PfeI GAWTC 2 cut(s) 481, 662
PflFI GACNNNGTC 1 cut(s) 650
PfoI TCCNGGA 1 cut(s) 441
PkrI GCNGC 1 cut(s) 596
PleI GAGTC 1 cut(s) 226
PpsI GAGTC 1 cut(s) 226
PshBI ATTAAT 1 cut(s) 588
Psp6I CCWGG 2 cut(s) 364, 441
PspGI CCWGG 2 cut(s) 364, 441
PspPI GGNCC 2 cut(s) 55, 572
PsyI GACNNNGTC 1 cut(s) 650
RsaI GTAC 1 cut(s) 426
RsaNI GTAC 1 cut(s) 425
RseI CAYNNNNRTG 1 cut(s) 228
SaqAI TTAA 3 cut(s) 60, 315, 588
SatI GCNGC 1 cut(s) 595
Sau3AI GATC 1 cut(s) 273
Sau96I GGNCC 2 cut(s) 55, 572
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 3 cut(s) 345, 366, 443
SinI GGWCC 2 cut(s) 55, 572
SmiMI CAYNNNNRTG 1 cut(s) 228
SphI GCATGC 1 cut(s) 561
Sse9I AATT 5 cut(s) 202, 305, 328, 487, 585
SsiI CCGC 1 cut(s) 597
SspMI CTAG 2 cut(s) 113, 691
StyD4I CCNGG 3 cut(s) 343, 364, 441
TaaI ACNGT 2 cut(s) 49, 424
TaiI ACGT 1 cut(s) 513
TaqI TCGA 2 cut(s) 216, 479
TaqII GACCGA 1 cut(s) 632
TasI AATT 5 cut(s) 202, 305, 328, 487, 585
TfiI GAWTC 2 cut(s) 481, 662
Tru1I TTAA 3 cut(s) 60, 315, 588
Tru9I TTAA 3 cut(s) 60, 315, 588
TscAI CASTG 1 cut(s) 181
TseFI GTSAC 2 cut(s) 250, 632
TseI GCWGC 1 cut(s) 594
Tsp45I GTSAC 2 cut(s) 250, 632
TspDTI ATGAA 5 cut(s) 17, 246, 402, 460, 506
TspRI CASTG 1 cut(s) 181
Tth111I GACNNNGTC 1 cut(s) 650
VpaK11BI GGWCC 2 cut(s) 55, 572
VspI ATTAAT 1 cut(s) 588
XapI RAATTY 3 cut(s) 202, 305, 487
XceI RCATGY 1 cut(s) 561
XmiI GTMKAC 2 cut(s) 340, 654
XspI CTAG 2 cut(s) 113, 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.