Rroxscaffold_5G00352070

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
28930758 .. 28938493
7736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00352070.1

Sequence Viewer

Length: 537 bp
ATGAGGAATATTGAGAGAGAAGCCGAAAATTTGGGAAGAAAATCAGTTCGTGAGCGAGAGACTCCATACCTTAATTCTCGGCTTTCATATTTTGAGCAAGTTGGTGATTCATTGAGGAAGAATCTAGGGGATGAAGAAGCCAAGACTTTAATATCAAAAGCTGTTTACTTATTTAGTGTCGGAGGCAATGATTACTCGTACATATTCGTGACAATTAACTCCAACTCCAGCATCCTTCAAACCTACTCTCATAGGAAATTTGTAGGAATCGTTTTAGGCAACATAACTGCAGCGGTCAATGTAAGTTTTGAGGAGGGAAAGGTAGCATGTTGTGGAAGTGGTCTATACAGAGGAATTTTCAGTTGTGGAGGTGAGAGAGGTATCAAAGAGTATTATTTATGCCCGGTTGCAAGTGAATATGTCTTCTTTGACTCTGCTCATCCAACAGAAAGGGTCAATCAACAATTTGCTAGGCTATTCTGGAGTGGAACTCCCAATTGCACTGCTCCTTACAATCTCAAAGAACTATTCGAATGA

Protein Analysis

178

Amino Acids

20.08

Weight (kDa)

6.74

Isoelectric Point (pI)

34.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 293
AcsI RAATTY 3 cut(s) 28, 257, 354
AfaI GTAC 1 cut(s) 200
AgsI TTSAA 1 cut(s) 239
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
Alw26I GTCTC 1 cut(s) 53
ApeKI GCWGC 1 cut(s) 290
ApoI RAATTY 3 cut(s) 28, 257, 354
AsuC2I CCSGG 1 cut(s) 404
AsuHPI GGTGA 2 cut(s) 116, 383
AsuII TTCGAA 1 cut(s) 531
BbsI GAAGAC 1 cut(s) 415
BbvI GCAGC 1 cut(s) 302
BcnI CCSGG 1 cut(s) 404
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 2 cut(s) 125, 471
BfmI CTRYAG 1 cut(s) 288
BisI GCNGC 1 cut(s) 291
BlsI GCNGC 1 cut(s) 292
Bme1390I CCNGG 1 cut(s) 404
BmrFI CCNGG 1 cut(s) 404
BmsI GCATC 1 cut(s) 240
BpiI GAAGAC 1 cut(s) 415
BplI GAGNNNNNCTC 2 cut(s) 475, 507
BpmI CTGGAG 2 cut(s) 211, 502
Bpu14I TTCGAA 1 cut(s) 531
BpuMI CCSGG 1 cut(s) 404
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bse3DI GCAATG 1 cut(s) 193
BseGI GGATG 3 cut(s) 136, 231, 439
BseMI GCAATG 1 cut(s) 193
BseRI GAGGAG 1 cut(s) 326
BseXI GCAGC 1 cut(s) 302
BsiSI CCGG 1 cut(s) 404
BsmAI GTCTC 1 cut(s) 53
Bsp119I TTCGAA 1 cut(s) 531
BspACI CCGC 1 cut(s) 293
BspMAI CTGCAG 1 cut(s) 292
BspT104I TTCGAA 1 cut(s) 531
BsrDI GCAATG 1 cut(s) 193
BstBI TTCGAA 1 cut(s) 531
BstF5I GGATG 3 cut(s) 136, 231, 439
BstMAI GTCTC 1 cut(s) 53
BstNSI RCATGY 1 cut(s) 330
BstSCI CCNGG 1 cut(s) 402
BstSFI CTRYAG 1 cut(s) 288
BstV1I GCAGC 1 cut(s) 302
BstV2I GAAGAC 1 cut(s) 415
BtsCI GGATG 3 cut(s) 136, 231, 439
BtsI GCAGTG 1 cut(s) 501
BtsIMutI CAGTG 1 cut(s) 501
Csp6I GTAC 1 cut(s) 199
CviAII CATG 1 cut(s) 327
CviJI RGCY 5 cut(s) 23, 82, 140, 161, 475
CviKI_1 RGCY 5 cut(s) 23, 82, 140, 161, 475
CviQI GTAC 1 cut(s) 199
FaeI CATG 1 cut(s) 330
FaiI YATR 9 cut(s) 67, 88, 203, 252, 284, 328, 346, 400, 420
FatI CATG 1 cut(s) 326
Fnu4HI GCNGC 1 cut(s) 291
FokI GGATG 3 cut(s) 143, 218, 426
Fsp4HI GCNGC 1 cut(s) 291
FspBI CTAG 2 cut(s) 125, 471
GluI GCNGC 1 cut(s) 291
GsuI CTGGAG 2 cut(s) 211, 502
HapII CCGG 1 cut(s) 404
Hin1II CATG 1 cut(s) 330
HinfI GANTC 5 cut(s) 61, 107, 121, 267, 431
HpaII CCGG 1 cut(s) 404
HphI GGTGA 2 cut(s) 116, 383
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 1 cut(s) 182
Hpy188III TCNNGA 3 cut(s) 50, 208, 481
Hpy8I GTNNAC 1 cut(s) 166
HpyAV CCTTC 1 cut(s) 245
HpyCH4V TGCA 3 cut(s) 290, 410, 501
Hsp92II CATG 1 cut(s) 330
LmnI GCTCC 1 cut(s) 511
LpnPI CCDG 3 cut(s) 241, 417, 466
Lsp1109I GCAGC 1 cut(s) 302
LweI GCATC 1 cut(s) 240
MaeI CTAG 2 cut(s) 125, 471
MaeIII GTNAC 1 cut(s) 208
MboII GAAGA 4 cut(s) 48, 130, 146, 415
MfeI CAATTG 1 cut(s) 496
MluCI AATT 7 cut(s) 28, 73, 213, 257, 354, 464, 496
MlyI GAGTC 2 cut(s) 55, 425
MmeI TCCRAC 3 cut(s) 160, 246, 467
MnlI CCTC 7 cut(s) 108, 176, 304, 307, 344, 362, 371
MseI TTAA 3 cut(s) 72, 149, 216
MslI CAYNNNNRTG 1 cut(s) 206
MspA1I CMGCKG 1 cut(s) 293
MspI CCGG 1 cut(s) 404
MspR9I CCNGG 1 cut(s) 404
MunI CAATTG 1 cut(s) 496
NciI CCSGG 1 cut(s) 404
NlaIII CATG 1 cut(s) 330
NmeAIII GCCGAG 1 cut(s) 58
NmuCI GTSAC 1 cut(s) 208
NspI RCATGY 1 cut(s) 330
NspV TTCGAA 1 cut(s) 531
PfeI GAWTC 3 cut(s) 107, 121, 267
PkrI GCNGC 1 cut(s) 292
PleI GAGTC 2 cut(s) 55, 425
PpsI GAGTC 2 cut(s) 55, 425
PstI CTGCAG 1 cut(s) 292
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
RseI CAYNNNNRTG 1 cut(s) 206
SaqAI TTAA 3 cut(s) 72, 149, 216
SatI GCNGC 1 cut(s) 291
SchI GAGTC 2 cut(s) 55, 425
ScrFI CCNGG 1 cut(s) 404
SetI ASST 6 cut(s) 72, 163, 245, 324, 373, 382
SfaNI GCATC 1 cut(s) 240
SfcI CTRYAG 1 cut(s) 288
SfuI TTCGAA 1 cut(s) 531
SmiMI CAYNNNNRTG 1 cut(s) 206
Sse9I AATT 7 cut(s) 28, 73, 213, 257, 354, 464, 496
SsiI CCGC 1 cut(s) 293
SspI AATATT 1 cut(s) 10
SspMI CTAG 2 cut(s) 125, 471
StyD4I CCNGG 1 cut(s) 402
TaqI TCGA 1 cut(s) 531
TasI AATT 7 cut(s) 28, 73, 213, 257, 354, 464, 496
TfiI GAWTC 3 cut(s) 107, 121, 267
Tru1I TTAA 3 cut(s) 72, 149, 216
Tru9I TTAA 3 cut(s) 72, 149, 216
TscAI CASTG 1 cut(s) 508
TseFI GTSAC 1 cut(s) 208
TseI GCWGC 1 cut(s) 290
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 3 cut(s) 75, 99, 147
TspRI CASTG 1 cut(s) 508
XapI RAATTY 3 cut(s) 28, 257, 354
XceI RCATGY 1 cut(s) 330
XspI CTAG 2 cut(s) 125, 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.