Rh7CG420700

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000193
Physical Location & Seq
Forward (+)
54300499 .. 54303892
3394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG420700.1

Sequence Viewer

Length: 894 bp
ATGGCAACTTCTTCAAGATTTCAAGTATATGTCCTGGCTTTTTGTGCAACCCTTCTTATTCAAAGTGGCTGTTATGGCTATTCTGTGCATCAGAGGAAACATGCAGCCTTGTTCATCTTCGGAGGTTCAACATTTGATGTTGGAAATAATAACTACATAAACACTTACAATTACTTTAAAGCAAATTTCTTCCCATATGGGGAAACCTTCTTCAGCCACCCGACTGGTAGGTTCTCCGATGGTCGTCTAATCTCAGATATCATTGCTGAATATGCAGACTTGCCAATGATTCCACCATACTTACAACCGGGTTTTGACAACTATACTAATGGGGTGAACTTTGCATCTGCTGGGGCTGGTGCTCTAGCTGAAACTAATCAAGGATTTGTGTTGGACCTTAAAACTCAACTGGGTTATTTCAAGAATGTGGAGAAGCAGTTGAGGCACAGACTAGGTGAAGCAGAAGCTCACACATTGTTGTCCCAAGCTGTTTACTTGATTGCCATTGGAACCAATGATTACCTTGCATTCATAACGAATTCAAGTTTGTCCGAGTCTCGCTCACATGAAGAATATGTTGGCATGGTGACAGGAAACATTACAAATGTGATCAAAGAAATATACAAGAAAGGAGGAAGAAAATTTGGGATTAAAGGCATAGAGAATTTGGGTTGTACCCCGGGCTTGAGAACAGGTAGACCAGGAAACACAAGCACCTGTAATGAAGAAGTAAATGCAATTTCAAAACTCCACAATAGAGTACTTGCTAAAGTCCTCGAGGAGCTGAAAGGACAGCTCCAAGACTTCATATACTCGAATCCAAATTTCTACTCTTACGCAAATGACGTAGTTAATAATCCATCAAAACATGGTATATACAGTCATCATAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

297

Amino Acids

32.99

Weight (kDa)

7.71

Isoelectric Point (pI)

23.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 37 - 269 2.6e-21 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 776
AccI GTMKAC 1 cut(s) 697
AcsI RAATTY 5 cut(s) 184, 538, 641, 664, 823
AcuI CTGAAG 1 cut(s) 196
AfaI GTAC 2 cut(s) 676, 762
AfiI CCNNNNNNNGG 1 cut(s) 199
AgsI TTSAA 7 cut(s) 15, 23, 62, 129, 421, 543, 744
AjnI CCWGG 2 cut(s) 33, 700
AjuI GAANNNNNNNTTGG 2 cut(s) 561, 593
AluBI AGCT 5 cut(s) 368, 467, 488, 784, 796
AluI AGCT 5 cut(s) 368, 467, 488, 784, 796
Alw21I GWGCWC 1 cut(s) 364
Alw26I GTCTC 1 cut(s) 561
Ama87I CYCGRG 2 cut(s) 679, 776
ApeKI GCWGC 1 cut(s) 104
ApoI RAATTY 5 cut(s) 184, 538, 641, 664, 823
AspS9I GGNCC 1 cut(s) 394
AsuC2I CCSGG 3 cut(s) 309, 680, 681
AsuHPI GGTGA 3 cut(s) 346, 467, 598
AvaI CYCGRG 2 cut(s) 679, 776
AvaII GGWCC 1 cut(s) 394
Bbv12I GWGCWC 1 cut(s) 364
BbvI GCAGC 1 cut(s) 116
BccI CCATC 2 cut(s) 233, 868
BciT130I CCWGG 2 cut(s) 35, 702
BclI TGATCA 1 cut(s) 609
BcnI CCSGG 3 cut(s) 309, 680, 681
BcoDI GTCTC 1 cut(s) 561
BfaI CTAG 3 cut(s) 365, 452, 892
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
BmcAI AGTACT 1 cut(s) 762
Bme1390I CCNGG 5 cut(s) 35, 309, 680, 681, 702
Bme18I GGWCC 1 cut(s) 394
BmeT110I CYCGRG 2 cut(s) 679, 776
BmgT120I GGNCC 1 cut(s) 394
BmiI GGNNCC 1 cut(s) 511
BmrFI CCNGG 5 cut(s) 35, 309, 680, 681, 702
BmrI ACTGGG 1 cut(s) 419
BmsI GCATC 2 cut(s) 97, 353
BmuI ACTGGG 1 cut(s) 419
BplI GAGNNNNNCTC 2 cut(s) 545, 577
BpuEI CTTGAG 1 cut(s) 706
BpuMI CCSGG 3 cut(s) 309, 680, 681
BsaJI CCNNGG 2 cut(s) 678, 679
BsaXI ACNNNNNCTCC 2 cut(s) 422, 452
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse1I ACTGG 2 cut(s) 229, 414
Bse3DI GCAATG 1 cut(s) 261
BseBI CCWGG 2 cut(s) 35, 702
BseDI CCNNGG 2 cut(s) 678, 679
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMI GCAATG 1 cut(s) 261
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 2 cut(s) 229, 414
BseRI GAGGAG 1 cut(s) 794
BseXI GCAGC 1 cut(s) 116
BseYI CCCAGC 1 cut(s) 350
BsiHKAI GWGCWC 1 cut(s) 364
BsiHKCI CYCGRG 2 cut(s) 679, 776
BsiSI CCGG 2 cut(s) 308, 680
BslFI GGGAC 1 cut(s) 466
BslI CCNNNNNNNGG 1 cut(s) 199
BsmAI GTCTC 1 cut(s) 561
BsmFI GGGAC 1 cut(s) 466
BsmI GAATGC 1 cut(s) 527
BsoBI CYCGRG 2 cut(s) 679, 776
Bsp1286I GDGCHC 1 cut(s) 364
Bsp143I GATC 1 cut(s) 609
BspCNI CTCAG 1 cut(s) 266
BspLI GGNNCC 1 cut(s) 511
BsrDI GCAATG 1 cut(s) 261
BsrI ACTGG 2 cut(s) 229, 414
BssECI CCNNGG 2 cut(s) 678, 679
BssMI GATC 1 cut(s) 609
Bst2UI CCWGG 2 cut(s) 35, 702
Bst4CI ACNGT 1 cut(s) 881
BstDEI CTNAG 1 cut(s) 253
BstKTI GATC 1 cut(s) 612
BstMAI GTCTC 1 cut(s) 561
BstMBI GATC 1 cut(s) 609
BstMWI GCNNNNNNNGC 4 cut(s) 44, 75, 272, 442
BstNI CCWGG 2 cut(s) 35, 702
BstNSI RCATGY 1 cut(s) 104
BstSCI CCNGG 5 cut(s) 33, 307, 678, 679, 700
BstV1I GCAGC 1 cut(s) 116
BstXI CCANNNNNNTGG 1 cut(s) 224
Cfr13I GGNCC 1 cut(s) 394
Cfr9I CCCGGG 1 cut(s) 679
Csp6I GTAC 2 cut(s) 675, 761
CviAII CATG 4 cut(s) 101, 566, 583, 869
CviQI GTAC 2 cut(s) 675, 761
DdeI CTNAG 1 cut(s) 253
DpnI GATC 1 cut(s) 611
DpnII GATC 1 cut(s) 609
DraI TTTAAA 1 cut(s) 178
Eco32I GATATC 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 394
Eco57I CTGAAG 1 cut(s) 196
Eco88I CYCGRG 2 cut(s) 679, 776
EcoRI GAATTC 1 cut(s) 538
EcoRII CCWGG 2 cut(s) 33, 700
EcoRV GATATC 1 cut(s) 259
FaeI CATG 4 cut(s) 104, 569, 586, 872
FaqI GGGAC 1 cut(s) 466
FatI CATG 4 cut(s) 100, 565, 582, 868
FauNDI CATATG 1 cut(s) 196
FbaI TGATCA 1 cut(s) 609
FblI GTMKAC 1 cut(s) 697
Fnu4HI GCNGC 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 105
FspBI CTAG 3 cut(s) 365, 452, 892
GluI GCNGC 1 cut(s) 105
GsaI CCCAGC 1 cut(s) 354
HapII CCGG 2 cut(s) 308, 680
Hin1II CATG 4 cut(s) 104, 569, 586, 872
HinfI GANTC 3 cut(s) 289, 554, 817
HpaII CCGG 2 cut(s) 308, 680
HphI GGTGA 3 cut(s) 346, 467, 598
Hpy166II GTNNAC 3 cut(s) 337, 493, 698
Hpy188I TCNGA 5 cut(s) 93, 122, 238, 256, 553
Hpy188III TCNNGA 2 cut(s) 15, 421
Hpy8I GTNNAC 3 cut(s) 337, 493, 698
HpyAV CCTTC 2 cut(s) 62, 217
HpyCH4III ACNGT 1 cut(s) 881
HpyCH4IV ACGT 1 cut(s) 846
HpyCH4V TGCA 7 cut(s) 47, 88, 104, 275, 344, 527, 737
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 75, 272, 442
HpyF3I CTNAG 1 cut(s) 253
HpySE526I ACGT 1 cut(s) 846
Hsp92II CATG 4 cut(s) 104, 569, 586, 872
Ksp22I TGATCA 1 cut(s) 609
Kzo9I GATC 1 cut(s) 609
LmnI GCTCC 2 cut(s) 781, 801
Lsp1109I GCAGC 1 cut(s) 116
LweI GCATC 2 cut(s) 97, 353
MaeI CTAG 3 cut(s) 365, 452, 892
MaeII ACGT 1 cut(s) 846
MaeIII GTNAC 1 cut(s) 586
MalI GATC 1 cut(s) 611
MboI GATC 1 cut(s) 609
MboII GAAGA 7 cut(s) 3, 109, 181, 202, 581, 648, 737
MhlI GDGCHC 1 cut(s) 364
MluCI AATT 7 cut(s) 169, 184, 538, 641, 664, 738, 823
MlyI GAGTC 1 cut(s) 563
MmeI TCCRAC 2 cut(s) 121, 372
MnlI CCTC 6 cut(s) 87, 116, 435, 626, 772, 785
MseI TTAA 4 cut(s) 177, 399, 651, 852
MspI CCGG 2 cut(s) 308, 680
MspR9I CCNGG 5 cut(s) 35, 309, 680, 681, 702
Mva1269I GAATGC 1 cut(s) 527
MvaI CCWGG 2 cut(s) 35, 702
MwoI GCNNNNNNNGC 4 cut(s) 44, 75, 272, 442
NciI CCSGG 3 cut(s) 309, 680, 681
NdeI CATATG 1 cut(s) 196
NdeII GATC 1 cut(s) 609
NlaIII CATG 4 cut(s) 104, 569, 586, 872
NlaIV GGNNCC 1 cut(s) 511
NmuCI GTSAC 1 cut(s) 586
NspI RCATGY 1 cut(s) 104
PaeR7I CTCGAG 1 cut(s) 776
PcsI WCGNNNNNNNCGW 1 cut(s) 843
PctI GAATGC 1 cut(s) 527
PfeI GAWTC 2 cut(s) 289, 817
PkrI GCNGC 1 cut(s) 106
PleI GAGTC 1 cut(s) 562
PpsI GAGTC 1 cut(s) 562
Psp6I CCWGG 2 cut(s) 33, 700
PspFI CCCAGC 1 cut(s) 350
PspGI CCWGG 2 cut(s) 33, 700
PspN4I GGNNCC 1 cut(s) 511
PspPI GGNCC 1 cut(s) 394
PspXI VCTCGAGB 1 cut(s) 776
RsaI GTAC 2 cut(s) 676, 762
RsaNI GTAC 2 cut(s) 675, 761
SaqAI TTAA 4 cut(s) 177, 399, 651, 852
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 1 cut(s) 609
Sau96I GGNCC 1 cut(s) 394
ScaI AGTACT 1 cut(s) 762
SchI GAGTC 1 cut(s) 563
ScrFI CCNGG 5 cut(s) 35, 309, 680, 681, 702
SduI GDGCHC 1 cut(s) 364
SfaNI GCATC 2 cut(s) 97, 353
Sfr274I CTCGAG 1 cut(s) 776
SinI GGWCC 1 cut(s) 394
SlaI CTCGAG 1 cut(s) 776
SmaI CCCGGG 1 cut(s) 681
SmlI CTYRAG 2 cut(s) 685, 776
SmoI CTYRAG 2 cut(s) 685, 776
Sse9I AATT 7 cut(s) 169, 184, 538, 641, 664, 738, 823
SspMI CTAG 3 cut(s) 365, 452, 892
StyD4I CCNGG 5 cut(s) 33, 307, 678, 679, 700
TaaI ACNGT 1 cut(s) 881
TaiI ACGT 1 cut(s) 849
TaqI TCGA 2 cut(s) 777, 815
TasI AATT 7 cut(s) 169, 184, 538, 641, 664, 738, 823
TatI WGTACW 1 cut(s) 760
TfiI GAWTC 2 cut(s) 289, 817
Tru1I TTAA 4 cut(s) 177, 399, 651, 852
Tru9I TTAA 4 cut(s) 177, 399, 651, 852
TseFI GTSAC 1 cut(s) 586
TseI GCWGC 1 cut(s) 104
Tsp45I GTSAC 1 cut(s) 586
TspDTI ATGAA 5 cut(s) 103, 520, 582, 738, 796
TspMI CCCGGG 1 cut(s) 679
VpaK11BI GGWCC 1 cut(s) 394
XapI RAATTY 5 cut(s) 184, 538, 641, 664, 823
XceI RCATGY 1 cut(s) 104
XhoI CTCGAG 1 cut(s) 776
XmaI CCCGGG 1 cut(s) 679
XmiI GTMKAC 1 cut(s) 697
XspI CTAG 3 cut(s) 365, 452, 892
ZrmI AGTACT 1 cut(s) 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.