Rmu_co8492209.1_g000001

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8492209.1
OG0000193
Physical Location & Seq
Reverse (-)
1 .. 1096
1096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8492209.1_g000001.1.cds

Sequence Viewer

Length: 375 bp
atggctagcctgcagatttctctctcgggtcagctaatcataatctgtgtgatgatgatgagtggctgccatggagcatttgctactagtgttgccttgttcattttcggggactcgactgtggatactggcaacaacaactacatcaccaccgtcccagaaaaccaagcacattacaagccctacggccagaatggtttctttgaccaccccaccggacgcttctccgatggtcgtgtcattgtagactacatagcggagtatgcaaagctgccaataatccctccatttttgggaccatctgctgactacacaaatggagtcaactttgcatcgggtggtgctggtgttcttccggaaaccaatcaaggatcg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

125

Amino Acids

13.26

Weight (kDa)

4.72

Isoelectric Point (pI)

19.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 246
AccIII TCCGGA 1 cut(s) 355
AciI CCGC 1 cut(s) 257
AcoI YGGCCR 1 cut(s) 187
AfiI CCNNNNNNNGG 1 cut(s) 293
AhlI ACTAGT 1 cut(s) 86
AluBI AGCT 2 cut(s) 34, 271
AluI AGCT 2 cut(s) 34, 271
Ama87I CYCGRG 1 cut(s) 25
Aor13HI TCCGGA 1 cut(s) 355
AoxI GGCC 1 cut(s) 187
ApeKI GCWGC 2 cut(s) 66, 271
Asp700I GAANNNNTTC 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 296
AsuHPI GGTGA 1 cut(s) 139
AsuNHI GCTAGC 1 cut(s) 5
AvaI CYCGRG 1 cut(s) 25
AvaII GGWCC 1 cut(s) 296
BbvI GCAGC 2 cut(s) 53, 258
BccI CCATC 2 cut(s) 224, 307
BceAI ACGGC 1 cut(s) 202
BciVI GTATCC 1 cut(s) 118
BcuI ACTAGT 1 cut(s) 86
BfaI CTAG 2 cut(s) 6, 87
BfmI CTRYAG 1 cut(s) 11
BfuI GTATCC 1 cut(s) 118
BisI GCNGC 2 cut(s) 67, 272
BlsI GCNGC 2 cut(s) 68, 273
Bme18I GGWCC 1 cut(s) 296
BmeT110I CYCGRG 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 296
BmiI GGNNCC 1 cut(s) 297
BmsI GCATC 1 cut(s) 341
BmtI GCTAGC 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 70
BsaWI WCCGGW 2 cut(s) 215, 355
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse1I ACTGG 1 cut(s) 133
BseAI TCCGGA 1 cut(s) 355
BseDI CCNNGG 1 cut(s) 70
BseLI CCNNNNNNNGG 1 cut(s) 293
BseNI ACTGG 1 cut(s) 133
BseXI GCAGC 2 cut(s) 53, 258
BshFI GGCC 1 cut(s) 189
BsiHKCI CYCGRG 1 cut(s) 25
BsiSI CCGG 2 cut(s) 216, 356
BslFI GGGAC 3 cut(s) 125, 140, 309
BslI CCNNNNNNNGG 1 cut(s) 293
BsmFI GGGAC 3 cut(s) 125, 140, 309
BsnI GGCC 1 cut(s) 189
BsoBI CYCGRG 1 cut(s) 25
Bsp13I TCCGGA 1 cut(s) 355
Bsp143I GATC 1 cut(s) 371
Bsp19I CCATGG 1 cut(s) 70
BspACI CCGC 1 cut(s) 257
BspANI GGCC 1 cut(s) 189
BspEI TCCGGA 1 cut(s) 355
BspLI GGNNCC 1 cut(s) 297
BspMAI CTGCAG 1 cut(s) 15
BspOI GCTAGC 1 cut(s) 9
BsrI ACTGG 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 1 cut(s) 371
BssT1I CCWWGG 1 cut(s) 70
Bst4CI ACNGT 2 cut(s) 121, 154
BstC8I GCNNGC 2 cut(s) 7, 11
BstDSI CCRYGG 1 cut(s) 70
BstKTI GATC 1 cut(s) 374
BstMBI GATC 1 cut(s) 371
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstSFI CTRYAG 1 cut(s) 11
BstV1I GCAGC 2 cut(s) 53, 258
BsuI GTATCC 1 cut(s) 118
BsuRI GGCC 1 cut(s) 189
BtgI CCRYGG 1 cut(s) 70
Cac8I GCNNGC 2 cut(s) 7, 11
Cfr13I GGNCC 1 cut(s) 296
CseI GACGC 1 cut(s) 228
CviAII CATG 1 cut(s) 71
CviJI RGCY 7 cut(s) 5, 9, 34, 66, 181, 189, 271
CviKI_1 RGCY 7 cut(s) 5, 9, 34, 66, 181, 189, 271
DpnI GATC 1 cut(s) 373
DpnII GATC 1 cut(s) 371
EaeI YGGCCR 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 70
Eco47I GGWCC 1 cut(s) 296
Eco88I CYCGRG 1 cut(s) 25
EcoT14I CCWWGG 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 70
FaeI CATG 1 cut(s) 74
FaiI YATR 4 cut(s) 41, 72, 254, 264
FaqI GGGAC 3 cut(s) 125, 140, 309
FatI CATG 1 cut(s) 70
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 2 cut(s) 67, 272
Fsp4HI GCNGC 2 cut(s) 67, 272
FspBI CTAG 2 cut(s) 6, 87
GluI GCNGC 2 cut(s) 67, 272
HaeIII GGCC 1 cut(s) 189
HapII CCGG 2 cut(s) 216, 356
HgaI GACGC 1 cut(s) 228
Hin1II CATG 1 cut(s) 74
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HinfI GANTC 2 cut(s) 113, 321
HpaII CCGG 2 cut(s) 216, 356
HphI GGTGA 1 cut(s) 139
Hpy166II GTNNAC 2 cut(s) 247, 325
Hpy188I TCNGA 1 cut(s) 229
Hpy188III TCNNGA 1 cut(s) 356
Hpy8I GTNNAC 2 cut(s) 247, 325
HpyCH4III ACNGT 2 cut(s) 121, 154
HpyCH4V TGCA 3 cut(s) 13, 266, 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
Hsp92II CATG 1 cut(s) 74
Kpn2I TCCGGA 1 cut(s) 355
Kzo9I GATC 1 cut(s) 371
LmnI GCTCC 1 cut(s) 74
LpnPI CCDG 7 cut(s) 23, 114, 171, 203, 229, 330, 369
Lsp1109I GCAGC 2 cut(s) 53, 258
LweI GCATC 1 cut(s) 341
MaeI CTAG 2 cut(s) 6, 87
MalI GATC 1 cut(s) 373
MboI GATC 1 cut(s) 371
MboII GAAGA 1 cut(s) 344
MlyI GAGTC 2 cut(s) 107, 330
MnlI CCTC 1 cut(s) 294
MroI TCCGGA 1 cut(s) 355
MroXI GAANNNNTTC 1 cut(s) 197
MspI CCGG 2 cut(s) 216, 356
MwoI GCNNNNNNNGC 1 cut(s) 263
NcoI CCATGG 1 cut(s) 70
NdeII GATC 1 cut(s) 371
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 1 cut(s) 74
NlaIV GGNNCC 1 cut(s) 297
PdmI GAANNNNTTC 1 cut(s) 197
PkrI GCNGC 2 cut(s) 68, 273
PleI GAGTC 2 cut(s) 107, 329
PpsI GAGTC 2 cut(s) 107, 329
PspN4I GGNNCC 1 cut(s) 297
PspPI GGNCC 1 cut(s) 296
PstI CTGCAG 1 cut(s) 15
SatI GCNGC 2 cut(s) 67, 272
Sau3AI GATC 1 cut(s) 371
Sau96I GGNCC 1 cut(s) 296
SchI GAGTC 2 cut(s) 107, 330
SetI ASST 2 cut(s) 36, 273
SfaNI GCATC 1 cut(s) 341
SfcI CTRYAG 1 cut(s) 11
SinI GGWCC 1 cut(s) 296
SpeI ACTAGT 1 cut(s) 86
SsiI CCGC 1 cut(s) 257
SspMI CTAG 2 cut(s) 6, 87
StyI CCWWGG 1 cut(s) 70
TaaI ACNGT 2 cut(s) 121, 154
TaqI TCGA 1 cut(s) 116
TseI GCWGC 2 cut(s) 66, 271
TspDTI ATGAA 1 cut(s) 91
VpaK11BI GGWCC 1 cut(s) 296
XmiI GTMKAC 1 cut(s) 246
XmnI GAANNNNTTC 1 cut(s) 197
XspI CTAG 2 cut(s) 6, 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.