FvH4_6g35572

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000193
Physical Location & Seq
Reverse (-)
28072941 .. 28073683
743 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g35572.t1

Sequence Viewer

Length: 498 bp
ATGGTGATTGGGAACCTCACAAATGTGATCAGAGAAATATATAACAAAGGAAGACGGAAATTCGGGTTTTCAAGATTGCCACCTCTGGGTCAGGTACCAGCCCAGAGACCAGGAAACAGAGGCACCTGTGTTGAAGAACTTACATCGCTTGCGAACATGCACAACGCAGCACTTCCTGAACTCCTCGAAAAGCTGAAGAGCAAGCTGCAAGGATTCAAATATTCAATTGCAAAACTAGATACTTACCTTACTGAAAGAATCAATAACCCATCTGAATATGGTTTCAAGGAAGGAAAAGCTGCATGCTGTGGCTCTGGTCCATATGGAGGTATTTTTAGCTGTGGAGGAAAGAGAAGTGTGACTGAGTACTACTGGTTATGTGCTAATGTTAGTATGTATTTTTCGACTCTTTTCATCCAACCGAAAGGGTTTACCAGCAAATCTCCAAGCTATGGTGGAACCAAACTCGTAATGACAGAGAGCCCTGCAGTAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

166

Amino Acids

18.15

Weight (kDa)

9.49

Isoelectric Point (pI)

49.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 5 - 106 2.7e-06 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 94
AccB1I GGYRCC 2 cut(s) 94, 122
AccB7I CCANNNNNTGG 1 cut(s) 452
AcsI RAATTY 1 cut(s) 59
AcuI CTGAAG 1 cut(s) 215
AfaI GTAC 2 cut(s) 96, 368
AfiI CCNNNNNNNGG 3 cut(s) 86, 326, 452
AgsI TTSAA 5 cut(s) 72, 134, 217, 225, 286
AjnI CCWGG 1 cut(s) 109
AleI CACNNNNGTG 1 cut(s) 23
AluBI AGCT 5 cut(s) 193, 205, 299, 339, 450
AluI AGCT 5 cut(s) 193, 205, 299, 339, 450
Alw26I GTCTC 1 cut(s) 100
ApeKI GCWGC 3 cut(s) 167, 205, 299
ApoI RAATTY 1 cut(s) 59
Asp718I GGTACC 1 cut(s) 94
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 317
BanI GGYRCC 2 cut(s) 94, 122
BanII GRGCYC 1 cut(s) 485
BbsI GAAGAC 1 cut(s) 58
BbvI GCAGC 3 cut(s) 179, 192, 286
BccI CCATC 1 cut(s) 277
BciT130I CCWGG 1 cut(s) 111
BclI TGATCA 1 cut(s) 27
BcoDI GTCTC 1 cut(s) 100
BfaI CTAG 1 cut(s) 236
BfmI CTRYAG 1 cut(s) 486
BisI GCNGC 3 cut(s) 168, 206, 300
BlsI GCNGC 3 cut(s) 169, 207, 301
BmcAI AGTACT 1 cut(s) 368
Bme1390I CCNGG 1 cut(s) 111
Bme18I GGWCC 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 317
BmiI GGNNCC 4 cut(s) 14, 96, 124, 460
BmrFI CCNGG 1 cut(s) 111
BpiI GAAGAC 1 cut(s) 58
BsaI GGTCTC 1 cut(s) 100
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 326, 452
Bse1I ACTGG 1 cut(s) 377
BseBI CCWGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 414
BseLI CCNNNNNNNGG 3 cut(s) 86, 326, 452
BseMII CTCAG 1 cut(s) 354
BseNI ACTGG 1 cut(s) 377
BseRI GAGGAG 1 cut(s) 173
BseXI GCAGC 3 cut(s) 179, 192, 286
BshNI GGYRCC 2 cut(s) 94, 122
BslI CCNNNNNNNGG 3 cut(s) 86, 326, 452
BsmAI GTCTC 1 cut(s) 100
Bso31I GGTCTC 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 485
Bsp143I GATC 1 cut(s) 27
BspCNI CTCAG 1 cut(s) 355
BspLI GGNNCC 4 cut(s) 14, 96, 124, 460
BspMAI CTGCAG 1 cut(s) 490
BspQI GCTCTTC 1 cut(s) 191
BspT107I GGYRCC 2 cut(s) 94, 122
BspTNI GGTCTC 1 cut(s) 100
BsrI ACTGG 1 cut(s) 377
BssMI GATC 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 111
Bst6I CTCTTC 1 cut(s) 191
BstC8I GCNNGC 3 cut(s) 150, 203, 304
BstDEI CTNAG 1 cut(s) 363
BstF5I GGATG 1 cut(s) 414
BstKTI GATC 1 cut(s) 30
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 1 cut(s) 27
BstNI CCWGG 1 cut(s) 111
BstNSI RCATGY 2 cut(s) 160, 306
BstSCI CCNGG 1 cut(s) 109
BstSFI CTRYAG 1 cut(s) 486
BstV1I GCAGC 3 cut(s) 179, 192, 286
BstV2I GAAGAC 1 cut(s) 58
BtgZI GCGATG 1 cut(s) 129
BtsCI GGATG 1 cut(s) 414
Cac8I GCNNGC 3 cut(s) 150, 203, 304
Cfr13I GGNCC 1 cut(s) 317
Csp6I GTAC 2 cut(s) 95, 367
CviAII CATG 2 cut(s) 157, 303
CviJI RGCY 8 cut(s) 101, 193, 205, 299, 312, 339, 450, 483
CviKI_1 RGCY 8 cut(s) 101, 193, 205, 299, 312, 339, 450, 483
CviQI GTAC 2 cut(s) 95, 367
DdeI CTNAG 1 cut(s) 363
DpnI GATC 1 cut(s) 29
DpnII GATC 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
Eco24I GRGCYC 1 cut(s) 485
Eco31I GGTCTC 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 317
Eco57I CTGAAG 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 109
EcoT38I GRGCYC 1 cut(s) 485
FaeI CATG 2 cut(s) 160, 306
FatI CATG 2 cut(s) 156, 302
FauNDI CATATG 1 cut(s) 322
FbaI TGATCA 1 cut(s) 27
Fnu4HI GCNGC 3 cut(s) 168, 206, 300
FokI GGATG 1 cut(s) 401
FriOI GRGCYC 1 cut(s) 485
Fsp4HI GCNGC 3 cut(s) 168, 206, 300
FspBI CTAG 1 cut(s) 236
GluI GCNGC 3 cut(s) 168, 206, 300
Hin1II CATG 2 cut(s) 160, 306
HinfI GANTC 3 cut(s) 213, 258, 406
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 432
Hpy188I TCNGA 3 cut(s) 32, 274, 497
Hpy188III TCNNGA 2 cut(s) 72, 176
Hpy8I GTNNAC 1 cut(s) 432
HpyAV CCTTC 1 cut(s) 284
HpyCH4V TGCA 5 cut(s) 160, 208, 230, 302, 488
HpyF3I CTNAG 1 cut(s) 363
Hsp92II CATG 2 cut(s) 160, 306
KpnI GGTACC 1 cut(s) 98
Ksp22I TGATCA 1 cut(s) 27
Kzo9I GATC 1 cut(s) 27
LguI GCTCTTC 1 cut(s) 191
Lsp1109I GCAGC 3 cut(s) 179, 192, 286
MaeI CTAG 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 358
MalI GATC 1 cut(s) 29
MboI GATC 1 cut(s) 27
MboII GAAGA 3 cut(s) 63, 146, 208
MfeI CAATTG 1 cut(s) 225
MhlI GDGCHC 1 cut(s) 485
MluCI AATT 2 cut(s) 59, 225
MlyI GAGTC 1 cut(s) 400
MmeI TCCRAC 1 cut(s) 442
MnlI CCTC 6 cut(s) 26, 93, 113, 194, 320, 338
MslI CAYNNNNRTG 1 cut(s) 23
MspR9I CCNGG 1 cut(s) 111
MunI CAATTG 1 cut(s) 225
MvaI CCWGG 1 cut(s) 111
NdeI CATATG 1 cut(s) 322
NdeII GATC 1 cut(s) 27
NlaIII CATG 2 cut(s) 160, 306
NlaIV GGNNCC 4 cut(s) 14, 96, 124, 460
NmuCI GTSAC 1 cut(s) 358
NspI RCATGY 2 cut(s) 160, 306
OliI CACNNNNGTG 1 cut(s) 23
PaeI GCATGC 1 cut(s) 306
PciSI GCTCTTC 1 cut(s) 191
PfeI GAWTC 2 cut(s) 213, 258
PflMI CCANNNNNTGG 1 cut(s) 452
PkrI GCNGC 3 cut(s) 169, 207, 301
PleI GAGTC 1 cut(s) 400
PpsI GAGTC 1 cut(s) 400
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 4 cut(s) 14, 96, 124, 460
PspPI GGNCC 1 cut(s) 317
PstI CTGCAG 1 cut(s) 490
RsaI GTAC 2 cut(s) 96, 368
RsaNI GTAC 2 cut(s) 95, 367
RseI CAYNNNNRTG 1 cut(s) 23
SapI GCTCTTC 1 cut(s) 191
SatI GCNGC 3 cut(s) 168, 206, 300
Sau3AI GATC 1 cut(s) 27
Sau96I GGNCC 1 cut(s) 317
ScaI AGTACT 1 cut(s) 368
SchI GAGTC 1 cut(s) 400
ScrFI CCNGG 1 cut(s) 111
SduI GDGCHC 1 cut(s) 485
SfcI CTRYAG 1 cut(s) 486
SinI GGWCC 1 cut(s) 317
SmiMI CAYNNNNRTG 1 cut(s) 23
SphI GCATGC 1 cut(s) 306
Sse9I AATT 2 cut(s) 59, 225
SspI AATATT 1 cut(s) 221
SspMI CTAG 1 cut(s) 236
StyD4I CCNGG 1 cut(s) 109
TaqI TCGA 2 cut(s) 186, 404
TasI AATT 2 cut(s) 59, 225
TatI WGTACW 1 cut(s) 366
TfiI GAWTC 2 cut(s) 213, 258
TseFI GTSAC 1 cut(s) 358
TseI GCWGC 3 cut(s) 167, 205, 299
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 1 cut(s) 403
TspGWI ACGGA 1 cut(s) 70
Van91I CCANNNNNTGG 1 cut(s) 452
VpaK11BI GGWCC 1 cut(s) 317
XapI RAATTY 1 cut(s) 59
XceI RCATGY 2 cut(s) 160, 306
XspI CTAG 1 cut(s) 236
ZrmI AGTACT 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.