FvH4_6g35571

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000193
Physical Location & Seq
Reverse (-)
28068821 .. 28071561
2741 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g35571.t2

Sequence Viewer

Length: 1134 bp
ATGATGCAAAAAGATACAGACTGGAAATCTGGAATGGCAGCTTTGAAGTTCCATGTTCTTATCTTGGCATTCTGGGCAGGTGTGCTTATTCCTAGCAGCTGCCATGGTCATTCAGGCCTTATGAGAAAACATGCAGCCCTGTACATATTTGGTGATTCATTGTTTGACCCAGGAAACAATAACTACATAAATACCACCAACGATTTCAAGGCAGATTGGCTTCCCTATGGTGAAACCTTCTTCAAGTACCCAACTGGCAGATTCTGCGACGGACGCCTAATACCAGATTTCATTGCTGAGTATGCAAAGTTGCCAATTGTACCTGCTATTTATCCGAGGATTGTGGACTACACTTATGGGGTCAACTTTGCTTCTGGTGGAGCTGGTGCTTTAGATGAAACACGTAAAAAAGGATTAGTTATACCCCTTAATTATCAACTGCATCTTTTCGAGGATGTGGTGAAGCACTTAAAGCACAATCTAGGTGATGCAGAAACCTACACATTGCTCTCCAATGCTGTTTACCTGATCAGCATTGGAGGCAATGATTATTTCGCTCCGTTAGCTACAGATTGCAGTTACTTTGAGACTCACTCACAAGAGGAATATGTTGGCATGGTGATTGGAAACCTCACAAATGTGATCAATGAAATATACAACAAAGGAGGACGGAAATTCGGGTTTACAAGATTGCCACCTCTGGGTCTTGTACCATCCCAGAGACCAGGAAACAATGGCACCTGTGTTAAAGAAGTTACGTCGCTAGTGAACATGCACAATACAGCACTTCCTAAACACCTCGAAAAGCTGAAGGGCAAGCTGCAAGGATTCAAATATTCCATTGCTAAATTAGACACTTACCTAACTGCAAGAATCAATTACCCATCTAAATATGGTTTCAAGGAAGGAAAGAGTGCATGCTGTGGCTCTGGTCCATATGGAGGAATTTATAGCTGTGGGGGGAAGAGAGGTGTGACCGAGTATCGGTTATGTGCCAATGTAAGTGAGTATGTCTTTTTCGACTCTTTCCATCCAACCGAAAGGGTTTATCAACAACTTGCTGAGCTATGGTGGAACCAAGTTCCTAATGCCAAAGAGCCTTACAGTAATCTGAAAGAGCTATTTGAAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

378

Amino Acids

42.26

Weight (kDa)

8.25

Isoelectric Point (pI)

23.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 48 - 132 6.4e-07 GDSL-like Lipase/Acylhydrolase
Lipase_GDSL PF00657 132 - 279 6.7e-09 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 68
Acc36I ACCTGC 2 cut(s) 68, 331
AccB1I GGYRCC 1 cut(s) 737
AcsI RAATTY 2 cut(s) 674, 945
AcuI CTGAAG 1 cut(s) 830
AcyI GRCGYC 1 cut(s) 274
AfaI GTAC 4 cut(s) 143, 248, 321, 711
AfiI CCNNNNNNNGG 3 cut(s) 701, 941, 984
AflIII ACRYGT 1 cut(s) 401
AgsI TTSAA 6 cut(s) 46, 208, 244, 832, 901, 1127
AjnI CCWGG 2 cut(s) 169, 724
AleI CACNNNNGTG 1 cut(s) 638
AluBI AGCT 9 cut(s) 41, 99, 383, 566, 808, 820, 954, 1066, 1120
AluI AGCT 9 cut(s) 41, 99, 383, 566, 808, 820, 954, 1066, 1120
Alw26I GTCTC 2 cut(s) 581, 715
AlwNI CAGNNNCTG 1 cut(s) 264
AoxI GGCC 1 cut(s) 115
ApeKI GCWGC 5 cut(s) 38, 96, 99, 134, 820
ApoI RAATTY 2 cut(s) 674, 945
AspS9I GGNCC 1 cut(s) 932
AsuHPI GGTGA 5 cut(s) 164, 242, 472, 497, 631
AvaII GGWCC 1 cut(s) 932
BanI GGYRCC 1 cut(s) 737
BbvI GCAGC 5 cut(s) 50, 86, 108, 146, 807
BccI CCATC 3 cut(s) 721, 892, 1038
BciT130I CCWGG 2 cut(s) 171, 726
BclI TGATCA 2 cut(s) 528, 642
BcoDI GTCTC 2 cut(s) 581, 715
BfaI CTAG 3 cut(s) 93, 482, 764
BfmI CTRYAG 1 cut(s) 567
BfuAI ACCTGC 2 cut(s) 68, 331
BisI GCNGC 5 cut(s) 39, 97, 100, 135, 821
BlpI GCTNAGC 1 cut(s) 1062
BlsI GCNGC 5 cut(s) 40, 98, 101, 136, 822
Bme1390I CCNGG 2 cut(s) 171, 726
Bme18I GGWCC 1 cut(s) 932
BmgT120I GGNCC 1 cut(s) 932
BmiI GGNNCC 2 cut(s) 739, 1076
BmrFI CCNGG 2 cut(s) 171, 726
BmsI GCATC 2 cut(s) 451, 478
BplI GAGNNNNNCTC 2 cut(s) 578, 610
Bpu1102I GCTNAGC 1 cut(s) 1062
BsaAI YACGTR 1 cut(s) 404
BsaHI GRCGYC 1 cut(s) 274
BsaI GGTCTC 1 cut(s) 715
BsaJI CCNNGG 3 cut(s) 103, 169, 335
Bsc4I CCNNNNNNNGG 3 cut(s) 701, 941, 984
Bse1I ACTGG 2 cut(s) 26, 259
Bse3DI GCAATG 4 cut(s) 291, 503, 550, 840
BseBI CCWGG 2 cut(s) 171, 726
BseDI CCNNGG 3 cut(s) 103, 169, 335
BseGI GGATG 3 cut(s) 460, 713, 1030
BseLI CCNNNNNNNGG 3 cut(s) 701, 941, 984
BseMI GCAATG 4 cut(s) 291, 503, 550, 840
BseMII CTCAG 2 cut(s) 288, 1053
BseNI ACTGG 2 cut(s) 26, 259
BseXI GCAGC 5 cut(s) 50, 86, 108, 146, 807
BshFI GGCC 1 cut(s) 117
BshNI GGYRCC 1 cut(s) 737
BslI CCNNNNNNNGG 3 cut(s) 701, 941, 984
BsmAI GTCTC 2 cut(s) 581, 715
BsmI GAATGC 1 cut(s) 68
BsnI GGCC 1 cut(s) 117
Bso31I GGTCTC 1 cut(s) 715
Bsp1407I TGTACA 1 cut(s) 141
Bsp143I GATC 2 cut(s) 528, 642
Bsp1720I GCTNAGC 1 cut(s) 1062
Bsp19I CCATGG 1 cut(s) 103
BspANI GGCC 1 cut(s) 117
BspCNI CTCAG 2 cut(s) 289, 1054
BspLI GGNNCC 2 cut(s) 739, 1076
BspMI ACCTGC 2 cut(s) 68, 331
BspT107I GGYRCC 1 cut(s) 737
BspTNI GGTCTC 1 cut(s) 715
BsrDI GCAATG 4 cut(s) 291, 503, 550, 840
BsrGI TGTACA 1 cut(s) 141
BsrI ACTGG 2 cut(s) 26, 259
BssECI CCNNGG 3 cut(s) 103, 169, 335
BssMI GATC 2 cut(s) 528, 642
BssNI GRCGYC 1 cut(s) 274
BssT1I CCWWGG 1 cut(s) 103
Bst2UI CCWGG 2 cut(s) 171, 726
Bst4CI ACNGT 1 cut(s) 1106
Bst6I CTCTTC 1 cut(s) 959
BstACI GRCGYC 1 cut(s) 274
BstAPI GCANNNNNTGC 1 cut(s) 264
BstAUI TGTACA 1 cut(s) 141
BstBAI YACGTR 1 cut(s) 404
BstC8I GCNNGC 2 cut(s) 818, 919
BstDEI CTNAG 2 cut(s) 297, 1062
BstDSI CCRYGG 1 cut(s) 103
BstF5I GGATG 3 cut(s) 460, 713, 1030
BstKTI GATC 2 cut(s) 531, 645
BstMAI GTCTC 2 cut(s) 581, 715
BstMBI GATC 2 cut(s) 528, 642
BstMWI GCNNNNNNNGC 7 cut(s) 74, 264, 273, 302, 472, 540, 563
BstNI CCWGG 2 cut(s) 171, 726
BstNSI RCATGY 3 cut(s) 134, 775, 921
BstSCI CCNGG 2 cut(s) 169, 724
BstSFI CTRYAG 1 cut(s) 567
BstV1I GCAGC 5 cut(s) 50, 86, 108, 146, 807
BsuRI GGCC 1 cut(s) 117
BtgI CCRYGG 1 cut(s) 103
BtsCI GGATG 3 cut(s) 460, 713, 1030
BveI ACCTGC 2 cut(s) 68, 331
Cac8I GCNNGC 2 cut(s) 818, 919
CaiI CAGNNNCTG 1 cut(s) 264
Cfr13I GGNCC 1 cut(s) 932
CseI GACGC 1 cut(s) 282
Csp6I GTAC 4 cut(s) 142, 247, 320, 710
CviAII CATG 6 cut(s) 53, 104, 131, 616, 772, 918
CviQI GTAC 4 cut(s) 142, 247, 320, 710
DdeI CTNAG 2 cut(s) 297, 1062
DpnI GATC 2 cut(s) 530, 644
DpnII GATC 2 cut(s) 528, 642
Eam1104I CTCTTC 1 cut(s) 959
EarI CTCTTC 1 cut(s) 959
Eco130I CCWWGG 1 cut(s) 103
Eco147I AGGCCT 1 cut(s) 117
Eco31I GGTCTC 1 cut(s) 715
Eco47I GGWCC 1 cut(s) 932
Eco57I CTGAAG 1 cut(s) 830
EcoRII CCWGG 2 cut(s) 169, 724
EcoT14I CCWWGG 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 103
FaeI CATG 6 cut(s) 56, 107, 134, 619, 775, 921
FatI CATG 6 cut(s) 52, 103, 130, 615, 771, 917
FauNDI CATATG 1 cut(s) 937
FbaI TGATCA 2 cut(s) 528, 642
Fnu4HI GCNGC 5 cut(s) 39, 97, 100, 135, 821
FokI GGATG 3 cut(s) 467, 700, 1017
Fsp4HI GCNGC 5 cut(s) 39, 97, 100, 135, 821
FspBI CTAG 3 cut(s) 93, 482, 764
GluI GCNGC 5 cut(s) 39, 97, 100, 135, 821
HaeIII GGCC 1 cut(s) 117
HgaI GACGC 1 cut(s) 282
Hin1I GRCGYC 1 cut(s) 274
Hin1II CATG 6 cut(s) 56, 107, 134, 619, 775, 921
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HinfI GANTC 6 cut(s) 155, 261, 589, 828, 873, 1022
HphI GGTGA 5 cut(s) 164, 242, 472, 497, 631
Hpy166II GTNNAC 5 cut(s) 346, 364, 523, 684, 769
Hpy188I TCNGA 2 cut(s) 336, 1113
Hpy188III TCNNGA 1 cut(s) 30
Hpy8I GTNNAC 5 cut(s) 346, 364, 523, 684, 769
Hpy99I CGWCG 2 cut(s) 272, 763
HpyAV CCTTC 3 cut(s) 247, 805, 899
HpyCH4III ACNGT 1 cut(s) 1106
HpyCH4IV ACGT 2 cut(s) 403, 758
HpyF10VI GCNNNNNNNGC 7 cut(s) 74, 264, 273, 302, 472, 540, 563
HpyF3I CTNAG 2 cut(s) 297, 1062
HpySE526I ACGT 2 cut(s) 403, 758
Hsp92I GRCGYC 1 cut(s) 274
Hsp92II CATG 6 cut(s) 56, 107, 134, 619, 775, 921
Ksp22I TGATCA 2 cut(s) 528, 642
Kzo9I GATC 2 cut(s) 528, 642
LmnI GCTCC 2 cut(s) 380, 562
Lsp1109I GCAGC 5 cut(s) 50, 86, 108, 146, 807
LweI GCATC 2 cut(s) 451, 478
MaeI CTAG 3 cut(s) 93, 482, 764
MaeII ACGT 2 cut(s) 403, 758
MaeIII GTNAC 3 cut(s) 578, 754, 973
MalI GATC 2 cut(s) 530, 644
MboI GATC 2 cut(s) 528, 642
MboII GAAGA 2 cut(s) 232, 976
MfeI CAATTG 1 cut(s) 315
MluCI AATT 6 cut(s) 315, 430, 674, 848, 877, 945
MlyI GAGTC 2 cut(s) 583, 1016
MmeI TCCRAC 1 cut(s) 1058
MseI TTAA 3 cut(s) 429, 470, 747
MslI CAYNNNNRTG 1 cut(s) 638
MspA1I CMGCKG 1 cut(s) 99
MspR9I CCNGG 2 cut(s) 171, 726
MunI CAATTG 1 cut(s) 315
Mva1269I GAATGC 1 cut(s) 68
MvaI CCWGG 2 cut(s) 171, 726
MwoI GCNNNNNNNGC 7 cut(s) 74, 264, 273, 302, 472, 540, 563
NcoI CCATGG 1 cut(s) 103
NdeI CATATG 1 cut(s) 937
NdeII GATC 2 cut(s) 528, 642
NlaIII CATG 6 cut(s) 56, 107, 134, 619, 775, 921
NlaIV GGNNCC 2 cut(s) 739, 1076
NmuCI GTSAC 1 cut(s) 973
NspI RCATGY 3 cut(s) 134, 775, 921
OliI CACNNNNGTG 1 cut(s) 638
PaeI GCATGC 1 cut(s) 921
PaqCI CACCTGC 1 cut(s) 68
PceI AGGCCT 1 cut(s) 117
PctI GAATGC 1 cut(s) 68
PfeI GAWTC 4 cut(s) 155, 261, 828, 873
PkrI GCNGC 5 cut(s) 40, 98, 101, 136, 822
PleI GAGTC 2 cut(s) 583, 1016
PpsI GAGTC 2 cut(s) 583, 1016
Ppu21I YACGTR 1 cut(s) 404
Psp6I CCWGG 2 cut(s) 169, 724
PspGI CCWGG 2 cut(s) 169, 724
PspN4I GGNNCC 2 cut(s) 739, 1076
PspPI GGNCC 1 cut(s) 932
PstNI CAGNNNCTG 1 cut(s) 264
PvuII CAGCTG 1 cut(s) 99
RsaI GTAC 4 cut(s) 143, 248, 321, 711
RsaNI GTAC 4 cut(s) 142, 247, 320, 710
RseI CAYNNNNRTG 1 cut(s) 638
SaqAI TTAA 3 cut(s) 429, 470, 747
SatI GCNGC 5 cut(s) 39, 97, 100, 135, 821
Sau3AI GATC 2 cut(s) 528, 642
Sau96I GGNCC 1 cut(s) 932
SchI GAGTC 2 cut(s) 583, 1016
ScrFI CCNGG 2 cut(s) 171, 726
SfaNI GCATC 2 cut(s) 451, 478
SfcI CTRYAG 1 cut(s) 567
SinI GGWCC 1 cut(s) 932
SmiMI CAYNNNNRTG 1 cut(s) 638
SphI GCATGC 1 cut(s) 921
Sse9I AATT 6 cut(s) 315, 430, 674, 848, 877, 945
SseBI AGGCCT 1 cut(s) 117
SspI AATATT 1 cut(s) 836
SspMI CTAG 3 cut(s) 93, 482, 764
StuI AGGCCT 1 cut(s) 117
StyD4I CCNGG 2 cut(s) 169, 724
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 1 cut(s) 1106
TaiI ACGT 2 cut(s) 406, 761
TaqI TCGA 3 cut(s) 450, 801, 1020
TaqII GACCGA 1 cut(s) 992
TasI AATT 6 cut(s) 315, 430, 674, 848, 877, 945
TatI WGTACW 1 cut(s) 141
TfiI GAWTC 4 cut(s) 155, 261, 828, 873
Tru1I TTAA 3 cut(s) 429, 470, 747
Tru9I TTAA 3 cut(s) 429, 470, 747
TseFI GTSAC 1 cut(s) 973
TseI GCWGC 5 cut(s) 38, 96, 99, 134, 820
Tsp45I GTSAC 1 cut(s) 973
TspDTI ATGAA 4 cut(s) 147, 280, 411, 663
TspGWI ACGGA 3 cut(s) 285, 549, 685
VpaK11BI GGWCC 1 cut(s) 932
XapI RAATTY 2 cut(s) 674, 945
XceI RCATGY 3 cut(s) 134, 775, 921
XspI CTAG 3 cut(s) 93, 482, 764
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.