Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0000193

Physical Location & Seq

Genomic Coordinates Forward (+)

7325383 .. 7325886

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g09170.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGCAAATACAAGCTTCCAAGTCTCTTGTGTCTTTGTCTTTTGTACGTGCCTCGGCCTTCTCATCACAGCACAAAGCCGCGGCCAATTTGGGTTTGAAAAATCTGTACCCGTTTTCTTCTTTGGAGATTCATTTTTTGATGCTGGAAATAATAACTACATCAACACTACTTTTCGGGCAAATTACTGGCCATATGGTGAAACCTTCTTCAAGAACCCAACCGGAAGATTTTCCGATGGTCGACTAATTTCAGATTTTATTGCTGAGTATGCGGAGTTGCCATTTATCCCACCGTATCTACAACCTGGTAATGATCAATTTACATATGGTGCAAACTTTGCATCTGCAGGAGCTGGTGCTTTGGTCGAAACAAGCCAAGGTTTGGTACGTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0006629 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009817 GO:0009861 GO:0009866 GO:0009871 GO:0009873 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0010928 GO:0010930 GO:0014070 GO:0016298 GO:0016787 GO:0016788 GO:0023051 GO:0023052 GO:0023057 GO:0031347 GO:0031349 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044238 GO:0044421 GO:0045087 GO:0045088 GO:0045089 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080134 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

132

Amino Acids

14.52

Weight (kDa)

4.89

Isoelectric Point (pI)

26.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca	FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica	MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica	Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis	pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis	RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata	RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora	Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa	Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha	Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana	Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	382
AccI	GTMKAC	1 cut(s)	241
AccII	CGCG	1 cut(s)	81
AciI	CCGC	3 cut(s)	79, 81, 272
AcoI	YGGCCR	2 cut(s)	82, 188
AfaI	GTAC	3 cut(s)	46, 108, 387
AfiI	CCNNNNNNNGG	1 cut(s)	382
AgsI	TTSAA	2 cut(s)	98, 211
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	2 cut(s)	15, 353
AluI	AGCT	2 cut(s)	15, 353
Alw26I	GTCTC	1 cut(s)	28
AlwNI	CAGNNNCTG	1 cut(s)	353
AoxI	GGCC	3 cut(s)	55, 82, 188
Asp700I	GAANNNNTTC	1 cut(s)	229
AsuHPI	GGTGA	1 cut(s)	209
BaeI	ACNNNNGTAYC	1 cut(s)	377
BalI	TGGCCA	1 cut(s)	190
BccI	CCATC	1 cut(s)	230
BciT130I	CCWGG	1 cut(s)	306
BclI	TGATCA	1 cut(s)	313
BcoDI	GTCTC	1 cut(s)	28
BfmI	CTRYAG	1 cut(s)	345
BisI	GCNGC	2 cut(s)	79, 82
BlsI	GCNGC	2 cut(s)	80, 83
Bme1390I	CCNGG	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	306
BmsI	GCATC	2 cut(s)	130, 350
BsaAI	YACGTR	2 cut(s)	48, 389
BsaJI	CCNNGG	3 cut(s)	52, 79, 376
BsaWI	WCCGGW	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse1I	ACTGG	1 cut(s)	191
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	3 cut(s)	52, 79, 376
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	191
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	3 cut(s)	57, 84, 190
BsiSI	CCGG	1 cut(s)	222
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmAI	GTCTC	1 cut(s)	28
BsnI	GGCC	3 cut(s)	57, 84, 190
Bsp143I	GATC	1 cut(s)	313
BspACI	CCGC	3 cut(s)	79, 81, 272
BspANI	GGCC	3 cut(s)	57, 84, 190
BspCNI	CTCAG	1 cut(s)	256
BspFNI	CGCG	1 cut(s)	81
BspMAI	CTGCAG	1 cut(s)	349
BsrI	ACTGG	1 cut(s)	191
BssECI	CCNNGG	3 cut(s)	52, 79, 376
BssMI	GATC	1 cut(s)	313
BssT1I	CCWWGG	1 cut(s)	376
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	294
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstBAI	YACGTR	2 cut(s)	48, 389
BstDEI	CTNAG	1 cut(s)	264
BstDSI	CCRYGG	1 cut(s)	79
BstFNI	CGCG	1 cut(s)	81
BstKTI	GATC	1 cut(s)	316
BstMAI	GTCTC	1 cut(s)	28
BstMBI	GATC	1 cut(s)	313
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 338
BstNI	CCWGG	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	304
BstSFI	CTRYAG	1 cut(s)	345
BstSNI	TACGTA	1 cut(s)	389
BstUI	CGCG	1 cut(s)	81
BsuRI	GGCC	3 cut(s)	57, 84, 190
BtgI	CCRYGG	1 cut(s)	79
CaiI	CAGNNNCTG	1 cut(s)	353
Cfr42I	CCGCGG	1 cut(s)	82
CsiI	ACCWGGT	1 cut(s)	304
Csp6I	GTAC	3 cut(s)	45, 107, 386
CviJI	RGCY	7 cut(s)	15, 57, 78, 84, 190, 353, 375
CviKI_1	RGCY	7 cut(s)	15, 57, 78, 84, 190, 353, 375
CviQI	GTAC	3 cut(s)	45, 107, 386
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
EaeI	YGGCCR	2 cut(s)	82, 188
Eco105I	TACGTA	1 cut(s)	389
Eco130I	CCWWGG	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	304
EcoT14I	CCWWGG	1 cut(s)	376
ErhI	CCWWGG	1 cut(s)	376
FaiI	YATR	5 cut(s)	193, 195, 270, 325, 327
FauNDI	CATATG	2 cut(s)	193, 325
FbaI	TGATCA	1 cut(s)	313
FblI	GTMKAC	1 cut(s)	241
Fnu4HI	GCNGC	2 cut(s)	79, 82
Fsp4HI	GCNGC	2 cut(s)	79, 82
GluI	GCNGC	2 cut(s)	79, 82
HaeIII	GGCC	3 cut(s)	57, 84, 190
HapII	CCGG	1 cut(s)	222
HincII	GTYRAC	1 cut(s)	242
HindII	GTYRAC	1 cut(s)	242
HindIII	AAGCTT	1 cut(s)	13
HinfI	GANTC	1 cut(s)	128
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	2 cut(s)	235, 253
Hpy188III	TCNNGA	1 cut(s)	211
Hpy8I	GTNNAC	1 cut(s)	242
HpyAV	CCTTC	2 cut(s)	68, 214
HpyCH4III	ACNGT	1 cut(s)	294
HpyCH4IV	ACGT	2 cut(s)	47, 388
HpyCH4V	TGCA	3 cut(s)	332, 341, 347
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 338
HpyF3I	CTNAG	1 cut(s)	264
HpySE526I	ACGT	2 cut(s)	47, 388
Ksp22I	TGATCA	1 cut(s)	313
KspI	CCGCGG	1 cut(s)	82
Kzo9I	GATC	1 cut(s)	313
LmnI	GCTCC	1 cut(s)	350
LpnPI	CCDG	7 cut(s)	129, 172, 235, 291, 318, 333, 339
LweI	GCATC	2 cut(s)	130, 350
MabI	ACCWGGT	1 cut(s)	304
MaeII	ACGT	2 cut(s)	47, 388
MalI	GATC	1 cut(s)	315
MboI	GATC	1 cut(s)	313
MboII	GAAGA	3 cut(s)	109, 199, 237
MlsI	TGGCCA	1 cut(s)	190
MluCI	AATT	4 cut(s)	86, 181, 246, 317
MluNI	TGGCCA	1 cut(s)	190
MnlI	CCTC	1 cut(s)	62
Mox20I	TGGCCA	1 cut(s)	190
MroXI	GAANNNNTTC	1 cut(s)	229
MscI	TGGCCA	1 cut(s)	190
Msp20I	TGGCCA	1 cut(s)	190
MspA1I	CMGCKG	1 cut(s)	81
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	306
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	2 cut(s)	269, 338
NdeI	CATATG	2 cut(s)	193, 325
NdeII	GATC	1 cut(s)	313
NmeAIII	GCCGAG	1 cut(s)	33
PdmI	GAANNNNTTC	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	128
PflMI	CCANNNNNTGG	1 cut(s)	382
PkrI	GCNGC	2 cut(s)	80, 83
Ppu21I	YACGTR	2 cut(s)	48, 389
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PstI	CTGCAG	1 cut(s)	349
PstNI	CAGNNNCTG	1 cut(s)	353
RsaI	GTAC	3 cut(s)	46, 108, 387
RsaNI	GTAC	3 cut(s)	45, 107, 386
SacII	CCGCGG	1 cut(s)	82
SalI	GTCGAC	1 cut(s)	240
SatI	GCNGC	2 cut(s)	79, 82
Sau3AI	GATC	1 cut(s)	313
ScrFI	CCNGG	1 cut(s)	306
SetI	ASST	7 cut(s)	17, 50, 206, 307, 355, 382, 391
SexAI	ACCWGGT	1 cut(s)	304
SfaNI	GCATC	2 cut(s)	130, 350
SfcI	CTRYAG	1 cut(s)	345
Sfr303I	CCGCGG	1 cut(s)	82
SgrBI	CCGCGG	1 cut(s)	82
SnaBI	TACGTA	1 cut(s)	389
Sse9I	AATT	4 cut(s)	86, 181, 246, 317
SsiI	CCGC	3 cut(s)	79, 81, 272
StyD4I	CCNGG	1 cut(s)	304
StyI	CCWWGG	1 cut(s)	376
TaaI	ACNGT	1 cut(s)	294
TaiI	ACGT	2 cut(s)	50, 391
TaqI	TCGA	2 cut(s)	241, 366
TasI	AATT	4 cut(s)	86, 181, 246, 317
TauI	GCSGC	2 cut(s)	81, 84
TfiI	GAWTC	1 cut(s)	128
TspDTI	ATGAA	1 cut(s)	120
Van91I	CCANNNNNTGG	1 cut(s)	382
XmiI	GTMKAC	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.