Rw2G037300

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
61464831 .. 61465711
881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G037300.1

Sequence Viewer

Length: 537 bp
ATGCGAATGGCAACTTTCAAAGTTTCCTATTTACATCCTGGCTTTATGTGCAGGCTTTCTTATTTTCCTATTTACATCCTGGCTTTATGTGCAGGCTTTCTTATTCCAAGCAGCTGTCATGATGGTTATTCTGGGATTCAGCAAAAACATGCAGCCTTGTTCATCTTTGGTGATTCAGTATTTGATGTTGGAAACAATAACTACATAAATACAACCACTACTTTTCAGTCAAATTTCTGGCCCTATGGGGAATCTTATTTCAGATACCCAACTGGCAGATTTTCTGATGGGCGTCTAATCCCTGATTTTATAGCTGAGTATGCAAATTTACCTTTTATACAACCATACTTACAACCCGAGTTCGATGACTATACTTATGGGGTGAACTTTGCTTCTGGTGGGGGTGGTGCTCTAGCTGAAACATATCAAGCATTTGCCATAGGCTTAAACACTCAATTGAGTTATTTCAAGAATGTGGAGAAGCAATTGAGGCACAAACTAGCTCGACTCAAGATGATGAATATGTTGGCATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

178

Amino Acids

20.33

Weight (kDa)

7.7

Isoelectric Point (pI)

31.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 53 - 161 8.5e-10 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 232, 325
AcyI GRCGYC 1 cut(s) 292
AgsI TTSAA 2 cut(s) 19, 469
AjnI CCWGG 2 cut(s) 37, 78
AluBI AGCT 4 cut(s) 114, 314, 416, 503
AluI AGCT 4 cut(s) 114, 314, 416, 503
Alw21I GWGCWC 1 cut(s) 412
Ama87I CYCGRG 1 cut(s) 356
AoxI GGCC 1 cut(s) 239
ApeKI GCWGC 2 cut(s) 111, 152
ApoI RAATTY 2 cut(s) 232, 325
AspS9I GGNCC 1 cut(s) 240
AsuHPI GGTGA 2 cut(s) 182, 394
AvaI CYCGRG 1 cut(s) 356
Bbv12I GWGCWC 1 cut(s) 412
BbvI GCAGC 2 cut(s) 123, 164
BccI CCATC 2 cut(s) 116, 281
BciT130I CCWGG 2 cut(s) 39, 80
BfaI CTAG 2 cut(s) 413, 500
BisI GCNGC 2 cut(s) 112, 153
BlsI GCNGC 2 cut(s) 113, 154
Bme1390I CCNGG 2 cut(s) 39, 80
BmeT110I CYCGRG 1 cut(s) 356
BmgT120I GGNCC 1 cut(s) 240
BmrFI CCNGG 2 cut(s) 39, 80
BpuEI CTTGAG 1 cut(s) 494
BsaHI GRCGYC 1 cut(s) 292
Bse1I ACTGG 1 cut(s) 277
BseBI CCWGG 2 cut(s) 39, 80
BseGI GGATG 2 cut(s) 34, 75
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 1 cut(s) 277
BseXI GCAGC 2 cut(s) 123, 164
BsgI GTGCAG 2 cut(s) 70, 111
BshFI GGCC 1 cut(s) 241
BsiHKAI GWGCWC 1 cut(s) 412
BsiHKCI CYCGRG 1 cut(s) 356
BsnI GGCC 1 cut(s) 241
BsoBI CYCGRG 1 cut(s) 356
Bsp1286I GDGCHC 1 cut(s) 412
BspANI GGCC 1 cut(s) 241
BspCNI CTCAG 1 cut(s) 307
BspHI TCATGA 1 cut(s) 118
BsrI ACTGG 1 cut(s) 277
BssNI GRCGYC 1 cut(s) 292
Bst2UI CCWGG 2 cut(s) 39, 80
BstACI GRCGYC 1 cut(s) 292
BstC8I GCNNGC 2 cut(s) 53, 94
BstDEI CTNAG 1 cut(s) 315
BstF5I GGATG 2 cut(s) 34, 75
BstMWI GCNNNNNNNGC 4 cut(s) 48, 89, 320, 490
BstNI CCWGG 2 cut(s) 39, 80
BstNSI RCATGY 1 cut(s) 152
BstSCI CCNGG 2 cut(s) 37, 78
BstV1I GCAGC 2 cut(s) 123, 164
BsuRI GGCC 1 cut(s) 241
BtsCI GGATG 2 cut(s) 34, 75
Cac8I GCNNGC 2 cut(s) 53, 94
CciI TCATGA 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 240
CseI GACGC 1 cut(s) 281
CviAII CATG 3 cut(s) 119, 149, 531
DdeI CTNAG 1 cut(s) 315
Eco88I CYCGRG 1 cut(s) 356
EcoRII CCWGG 2 cut(s) 37, 78
FaeI CATG 3 cut(s) 122, 152, 534
FatI CATG 3 cut(s) 118, 148, 530
Fnu4HI GCNGC 2 cut(s) 112, 153
FokI GGATG 2 cut(s) 21, 62
Fsp4HI GCNGC 2 cut(s) 112, 153
FspBI CTAG 2 cut(s) 413, 500
GluI GCNGC 2 cut(s) 112, 153
HaeIII GGCC 1 cut(s) 241
HgaI GACGC 1 cut(s) 281
Hin1I GRCGYC 1 cut(s) 292
Hin1II CATG 3 cut(s) 122, 152, 534
HinfI GANTC 4 cut(s) 136, 173, 251, 507
HphI GGTGA 2 cut(s) 182, 394
Hpy166II GTNNAC 1 cut(s) 385
Hpy188I TCNGA 2 cut(s) 263, 286
Hpy188III TCNNGA 3 cut(s) 119, 469, 511
Hpy8I GTNNAC 1 cut(s) 385
HpyCH4V TGCA 4 cut(s) 51, 92, 152, 323
HpyF10VI GCNNNNNNNGC 4 cut(s) 48, 89, 320, 490
HpyF3I CTNAG 1 cut(s) 315
Hsp92I GRCGYC 1 cut(s) 292
Hsp92II CATG 3 cut(s) 122, 152, 534
Lsp1109I GCAGC 2 cut(s) 123, 164
MaeI CTAG 2 cut(s) 413, 500
MfeI CAATTG 2 cut(s) 455, 485
MhlI GDGCHC 1 cut(s) 412
MluCI AATT 4 cut(s) 232, 325, 455, 485
MlyI GAGTC 1 cut(s) 501
MmeI TCCRAC 1 cut(s) 169
MnlI CCTC 1 cut(s) 483
MseI TTAA 1 cut(s) 446
MspA1I CMGCKG 1 cut(s) 114
MspR9I CCNGG 2 cut(s) 39, 80
MunI CAATTG 2 cut(s) 455, 485
MvaI CCWGG 2 cut(s) 39, 80
MwoI GCNNNNNNNGC 4 cut(s) 48, 89, 320, 490
NlaIII CATG 3 cut(s) 122, 152, 534
NspI RCATGY 1 cut(s) 152
PagI TCATGA 1 cut(s) 118
PfeI GAWTC 3 cut(s) 136, 173, 251
PkrI GCNGC 2 cut(s) 113, 154
PleI GAGTC 1 cut(s) 501
PpsI GAGTC 1 cut(s) 501
Psp6I CCWGG 2 cut(s) 37, 78
PspGI CCWGG 2 cut(s) 37, 78
PspPI GGNCC 1 cut(s) 240
PvuII CAGCTG 1 cut(s) 114
SaqAI TTAA 1 cut(s) 446
SatI GCNGC 2 cut(s) 112, 153
Sau96I GGNCC 1 cut(s) 240
SchI GAGTC 1 cut(s) 501
ScrFI CCNGG 2 cut(s) 39, 80
SduI GDGCHC 1 cut(s) 412
SetI ASST 5 cut(s) 116, 316, 334, 418, 505
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
Sse9I AATT 4 cut(s) 232, 325, 455, 485
SspMI CTAG 2 cut(s) 413, 500
StyD4I CCNGG 2 cut(s) 37, 78
TaqI TCGA 2 cut(s) 363, 505
TasI AATT 4 cut(s) 232, 325, 455, 485
TfiI GAWTC 3 cut(s) 136, 173, 251
Tru1I TTAA 1 cut(s) 446
Tru9I TTAA 1 cut(s) 446
TseI GCWGC 2 cut(s) 111, 152
TspDTI ATGAA 2 cut(s) 151, 533
XapI RAATTY 2 cut(s) 232, 325
XceI RCATGY 1 cut(s) 152
XspI CTAG 2 cut(s) 413, 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.