Prupe.3G033300_v2.0.a1

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000193
Physical Location & Seq
Forward (+)
2460946 .. 2462835
1890 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G033300.1

Sequence Viewer

Length: 1110 bp
ATGGCAAGTTCAAGGCTTCATATATTCATCCTGGCTTTCTGTGCAAGCCTTCTTTTTCCAAGCAACTGTAGCCATGGCGATTCCGGGCTTCAGGAGAAACGTGCAGCGTTGTTCATCTTTGGTGATTCACTATTTGATGTTGGAAATAATAACTACATTAATACTACCATTAGCTTTAAGGCAAATAACTGGCCATATGGAGAAACCTTCTTCAAGTACCCCACCGGTAGAGCTTCCGATGGCCGTCTAATCCCTGATTTCATTGCTAAGTATGCAAAGTTGCCATTCATACCACCATATTTACAACCTGGCTTCAACAACTATACTTATGGGGTGAACTTTGCATCTGCTGGGGGTGGTGCTCTATCTGAAACTCATCAAGGATTTGTGAAAGACCTTAAAACTCAAGTGAGTTATTTCAAGAATGTCGAGAAGCAGTTAAGGCACAAACTAGGTGATGCCGGAGCCTACACATTTCTATCAGAAGCTGTTTACTTGATTAGCATTGGAATCAATGATTATTATACCCCATTCCTAACAAATTCAAGTTTGTTTGCGTCCCACTCACATGAAGAATATGTTGGCATGGTGGTTGGCAACCTGACAGATGTGATCAAAGAAATATACAAGAAAGGAGGAAGGAAATTCGGGTTTGCAAATGGGGTTCCTCTCGGTTGTATACCTTCCATGAGAATACTTAAACAAGAAAACATAGGTGCCTGCTCTGAAGAAGTTACAGCACTAGTGAAACTACACAGCAGAGTAGTTGCTAAAGGCCTCCTAAAGCTGAAGAGCCAGCTGCATGGATTCAGATATTCAAATGCAAACTTCTACACTCCCTTAACTGATACAATTAATAACCCATCAAAATATGGTTTCAAGGAAGGAAAGATGGCATGCTGTGGCTCTGGTCCATACAGAGGAATTATGAGCTGTGGTGGGAAGAGAGGTTCAGAGTTTCAGTTATGTGACAATGTTACTGAATATGTCTTTTTTGACTCTAGCCACCCAACAGAAAGGGTTTACCAGCAAATATCCAAGTTATGGTGGAGTGGAAGTCCCAATGTGACTAAGACGAGCAATAATCTAAAGGAGCTGTTTGAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

370

Amino Acids

40.99

Weight (kDa)

8.99

Isoelectric Point (pI)

33.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 716
AccB7I CCANNNNNTGG 1 cut(s) 1044
AccI GTMKAC 1 cut(s) 679
AcoI YGGCCR 2 cut(s) 191, 241
AcsI RAATTY 2 cut(s) 541, 644
AcuI CTGAAG 3 cut(s) 74, 747, 809
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 2 cut(s) 920, 1044
AgeI ACCGGT 1 cut(s) 224
AgsI TTSAA 8 cut(s) 12, 214, 316, 421, 546, 819, 880, 1103
AhlI ACTAGT 1 cut(s) 742
AjnI CCWGG 2 cut(s) 30, 307
AjuI GAANNNNNNNTTGG 2 cut(s) 564, 596
AloI GAACNNNNNNTCC 2 cut(s) 934, 966
AluBI AGCT 7 cut(s) 174, 233, 488, 787, 799, 933, 1096
AluI AGCT 7 cut(s) 174, 233, 488, 787, 799, 933, 1096
Alw21I GWGCWC 1 cut(s) 364
AlwNI CAGNNNCTG 1 cut(s) 488
AoxI GGCC 3 cut(s) 191, 241, 775
ApeKI GCWGC 2 cut(s) 104, 799
ApoI RAATTY 2 cut(s) 541, 644
AseI ATTAAT 2 cut(s) 159, 855
AsiGI ACCGGT 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 911
AsuC2I CCSGG 1 cut(s) 85
AsuHPI GGTGA 3 cut(s) 134, 346, 467
AvaII GGWCC 1 cut(s) 911
BalI TGGCCA 1 cut(s) 193
BanI GGYRCC 1 cut(s) 716
Bbv12I GWGCWC 1 cut(s) 364
BbvI GCAGC 2 cut(s) 116, 786
BccI CCATC 3 cut(s) 233, 871, 886
BceAI ACGGC 1 cut(s) 228
BciT130I CCWGG 2 cut(s) 32, 309
BclI TGATCA 1 cut(s) 612
BcnI CCSGG 1 cut(s) 85
BcuI ACTAGT 1 cut(s) 742
BfaI CTAG 3 cut(s) 452, 743, 1002
BfmI CTRYAG 1 cut(s) 67
BisI GCNGC 2 cut(s) 105, 800
BlsI GCNGC 2 cut(s) 106, 801
Bme1390I CCNGG 3 cut(s) 32, 85, 309
Bme18I GGWCC 1 cut(s) 911
BmgT120I GGNCC 1 cut(s) 911
BmiI GGNNCC 3 cut(s) 466, 666, 718
BmrFI CCNGG 3 cut(s) 32, 85, 309
BmsI GCATC 2 cut(s) 353, 448
BpuEI CTTGAG 1 cut(s) 390
BpuMI CCSGG 1 cut(s) 85
BsaJI CCNNGG 1 cut(s) 73
BsaWI WCCGGW 1 cut(s) 224
BsaXI ACNNNNNCTCC 2 cut(s) 1042, 1072
Bsc4I CCNNNNNNNGG 2 cut(s) 920, 1044
Bse118I RCCGGY 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 194
Bse3DI GCAATG 1 cut(s) 261
BseBI CCWGG 2 cut(s) 32, 309
BseDI CCNNGG 1 cut(s) 73
BseGI GGATG 1 cut(s) 27
BseLI CCNNNNNNNGG 2 cut(s) 920, 1044
BseMI GCAATG 1 cut(s) 261
BseNI ACTGG 1 cut(s) 194
BseXI GCAGC 2 cut(s) 116, 786
BseYI CCCAGC 1 cut(s) 350
BsgI GTGCAG 1 cut(s) 123
BshFI GGCC 3 cut(s) 193, 243, 777
BshNI GGYRCC 1 cut(s) 716
BshTI ACCGGT 1 cut(s) 224
BsiHKAI GWGCWC 1 cut(s) 364
BsiSI CCGG 3 cut(s) 84, 225, 462
BslFI GGGAC 2 cut(s) 544, 1044
BslI CCNNNNNNNGG 2 cut(s) 920, 1044
BsmFI GGGAC 2 cut(s) 544, 1044
BsnI GGCC 3 cut(s) 193, 243, 777
Bsp1286I GDGCHC 1 cut(s) 364
Bsp143I GATC 1 cut(s) 612
Bsp19I CCATGG 1 cut(s) 73
BspANI GGCC 3 cut(s) 193, 243, 777
BspLI GGNNCC 3 cut(s) 466, 666, 718
BspQI GCTCTTC 1 cut(s) 785
BspT107I GGYRCC 1 cut(s) 716
BsrDI GCAATG 1 cut(s) 261
BsrFI RCCGGY 1 cut(s) 224
BsrI ACTGG 1 cut(s) 194
BssAI RCCGGY 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 1 cut(s) 612
BssNAI GTATAC 1 cut(s) 680
BssT1I CCWWGG 1 cut(s) 73
Bst1107I GTATAC 1 cut(s) 680
Bst2UI CCWGG 2 cut(s) 32, 309
Bst4CI ACNGT 1 cut(s) 68
Bst6I CTCTTC 2 cut(s) 785, 938
BstC8I GCNNGC 4 cut(s) 46, 721, 797, 898
BstDEI CTNAG 2 cut(s) 267, 1071
BstDSI CCRYGG 1 cut(s) 73
BstF5I GGATG 1 cut(s) 27
BstKTI GATC 1 cut(s) 615
BstMBI GATC 1 cut(s) 612
BstMWI GCNNNNNNNGC 4 cut(s) 41, 69, 272, 442
BstNI CCWGG 2 cut(s) 32, 309
BstNSI RCATGY 1 cut(s) 900
BstSCI CCNGG 3 cut(s) 30, 83, 307
BstSFI CTRYAG 1 cut(s) 67
BstV1I GCAGC 2 cut(s) 116, 786
BstXI CCANNNNNNTGG 1 cut(s) 803
BstZ17I GTATAC 1 cut(s) 680
BsuRI GGCC 3 cut(s) 193, 243, 777
BtgI CCRYGG 1 cut(s) 73
BtsCI GGATG 1 cut(s) 27
Cac8I GCNNGC 4 cut(s) 46, 721, 797, 898
CaiI CAGNNNCTG 1 cut(s) 488
Cfr10I RCCGGY 1 cut(s) 224
Cfr13I GGNCC 1 cut(s) 911
CseI GACGC 1 cut(s) 546
Csp6I GTAC 1 cut(s) 217
CspAI ACCGGT 1 cut(s) 224
CviAII CATG 6 cut(s) 74, 569, 586, 688, 803, 897
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 2 cut(s) 267, 1071
DpnI GATC 1 cut(s) 614
DpnII GATC 1 cut(s) 612
EaeI YGGCCR 2 cut(s) 191, 241
Eam1104I CTCTTC 2 cut(s) 785, 938
EarI CTCTTC 2 cut(s) 785, 938
Eco130I CCWWGG 1 cut(s) 73
Eco147I AGGCCT 1 cut(s) 777
Eco47I GGWCC 1 cut(s) 911
Eco57I CTGAAG 3 cut(s) 74, 747, 809
EcoRII CCWGG 2 cut(s) 30, 307
EcoT14I CCWWGG 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 73
FaeI CATG 6 cut(s) 77, 572, 589, 691, 806, 900
FaqI GGGAC 2 cut(s) 544, 1044
FatI CATG 6 cut(s) 73, 568, 585, 687, 802, 896
FauNDI CATATG 1 cut(s) 196
FbaI TGATCA 1 cut(s) 612
FblI GTMKAC 1 cut(s) 679
Fnu4HI GCNGC 2 cut(s) 105, 800
FokI GGATG 1 cut(s) 14
Fsp4HI GCNGC 2 cut(s) 105, 800
FspBI CTAG 3 cut(s) 452, 743, 1002
GluI GCNGC 2 cut(s) 105, 800
GsaI CCCAGC 1 cut(s) 354
HaeIII GGCC 3 cut(s) 193, 243, 777
HapII CCGG 3 cut(s) 84, 225, 462
HgaI GACGC 1 cut(s) 546
Hin1II CATG 6 cut(s) 77, 572, 589, 691, 806, 900
HinfI GANTC 5 cut(s) 80, 125, 510, 807, 998
HpaII CCGG 3 cut(s) 84, 225, 462
HphI GGTGA 3 cut(s) 134, 346, 467
Hpy166II GTNNAC 4 cut(s) 337, 493, 680, 1024
Hpy188I TCNGA 6 cut(s) 238, 370, 484, 727, 812, 955
Hpy188III TCNNGA 3 cut(s) 92, 421, 430
Hpy8I GTNNAC 4 cut(s) 337, 493, 680, 1024
HpyAV CCTTC 5 cut(s) 59, 217, 633, 693, 878
HpyCH4III ACNGT 1 cut(s) 68
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 7 cut(s) 44, 104, 275, 344, 656, 802, 824
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 69, 272, 442
HpyF3I CTNAG 2 cut(s) 267, 1071
HpySE526I ACGT 1 cut(s) 100
Hsp92II CATG 6 cut(s) 77, 572, 589, 691, 806, 900
Ksp22I TGATCA 1 cut(s) 612
Kzo9I GATC 1 cut(s) 612
LguI GCTCTTC 1 cut(s) 785
LmnI GCTCC 2 cut(s) 464, 1093
Lsp1109I GCAGC 2 cut(s) 116, 786
LweI GCATC 2 cut(s) 353, 448
MaeI CTAG 3 cut(s) 452, 743, 1002
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 4 cut(s) 733, 968, 976, 1066
MalI GATC 1 cut(s) 614
MboI GATC 1 cut(s) 612
MboII GAAGA 5 cut(s) 202, 584, 740, 802, 955
MhlI GDGCHC 1 cut(s) 364
MlsI TGGCCA 1 cut(s) 193
MluCI AATT 4 cut(s) 541, 644, 852, 924
MluNI TGGCCA 1 cut(s) 193
MlyI GAGTC 1 cut(s) 992
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 5 cut(s) 629, 678, 788, 914, 941
Mox20I TGGCCA 1 cut(s) 193
MscI TGGCCA 1 cut(s) 193
MseI TTAA 7 cut(s) 159, 177, 399, 440, 699, 842, 855
MslI CAYNNNNRTG 1 cut(s) 567
Msp20I TGGCCA 1 cut(s) 193
MspA1I CMGCKG 1 cut(s) 799
MspI CCGG 3 cut(s) 84, 225, 462
MspR9I CCNGG 3 cut(s) 32, 85, 309
MvaI CCWGG 2 cut(s) 32, 309
MwoI GCNNNNNNNGC 4 cut(s) 41, 69, 272, 442
NciI CCSGG 1 cut(s) 85
NcoI CCATGG 1 cut(s) 73
NdeI CATATG 1 cut(s) 196
NdeII GATC 1 cut(s) 612
NlaIII CATG 6 cut(s) 77, 572, 589, 691, 806, 900
NlaIV GGNNCC 3 cut(s) 466, 666, 718
NmuCI GTSAC 2 cut(s) 968, 1066
NspI RCATGY 1 cut(s) 900
PaeI GCATGC 1 cut(s) 900
PceI AGGCCT 1 cut(s) 777
PciSI GCTCTTC 1 cut(s) 785
PfeI GAWTC 4 cut(s) 80, 125, 510, 807
PflMI CCANNNNNTGG 1 cut(s) 1044
PinAI ACCGGT 1 cut(s) 224
PkrI GCNGC 2 cut(s) 106, 801
PleI GAGTC 1 cut(s) 992
PpsI GAGTC 1 cut(s) 992
PshBI ATTAAT 2 cut(s) 159, 855
Psp6I CCWGG 2 cut(s) 30, 307
PspFI CCCAGC 1 cut(s) 350
PspGI CCWGG 2 cut(s) 30, 307
PspN4I GGNNCC 3 cut(s) 466, 666, 718
PspPI GGNCC 1 cut(s) 911
PstNI CAGNNNCTG 1 cut(s) 488
PvuII CAGCTG 1 cut(s) 799
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 567
SapI GCTCTTC 1 cut(s) 785
SaqAI TTAA 7 cut(s) 159, 177, 399, 440, 699, 842, 855
SatI GCNGC 2 cut(s) 105, 800
Sau3AI GATC 1 cut(s) 612
Sau96I GGNCC 1 cut(s) 911
SchI GAGTC 1 cut(s) 992
ScrFI CCNGG 3 cut(s) 32, 85, 309
SduI GDGCHC 1 cut(s) 364
SfaNI GCATC 2 cut(s) 353, 448
SfcI CTRYAG 1 cut(s) 67
SinI GGWCC 1 cut(s) 911
SmiMI CAYNNNNRTG 1 cut(s) 567
SmlI CTYRAG 1 cut(s) 405
SmoI CTYRAG 1 cut(s) 405
SpeI ACTAGT 1 cut(s) 742
SphI GCATGC 1 cut(s) 900
Sse9I AATT 4 cut(s) 541, 644, 852, 924
SseBI AGGCCT 1 cut(s) 777
SspMI CTAG 3 cut(s) 452, 743, 1002
StuI AGGCCT 1 cut(s) 777
StyD4I CCNGG 3 cut(s) 30, 83, 307
StyI CCWWGG 1 cut(s) 73
TaaI ACNGT 1 cut(s) 68
TaiI ACGT 1 cut(s) 103
TaqI TCGA 1 cut(s) 429
TasI AATT 4 cut(s) 541, 644, 852, 924
TfiI GAWTC 4 cut(s) 80, 125, 510, 807
Tru1I TTAA 7 cut(s) 159, 177, 399, 440, 699, 842, 855
Tru9I TTAA 7 cut(s) 159, 177, 399, 440, 699, 842, 855
TseFI GTSAC 2 cut(s) 968, 1066
TseI GCWGC 2 cut(s) 104, 799
Tsp45I GTSAC 2 cut(s) 968, 1066
TspDTI ATGAA 6 cut(s) 8, 16, 103, 250, 277, 585
Van91I CCANNNNNTGG 1 cut(s) 1044
VpaK11BI GGWCC 1 cut(s) 911
VspI ATTAAT 2 cut(s) 159, 855
XapI RAATTY 2 cut(s) 541, 644
XceI RCATGY 1 cut(s) 900
XmiI GTMKAC 1 cut(s) 679
XspI CTAG 3 cut(s) 452, 743, 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.