FvH4_6g35600

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000193
Physical Location & Seq
Reverse (-)
28097098 .. 28098844
1747 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g35600.t1

Sequence Viewer

Length: 1095 bp
ATGGCAATTGTCTTAAAGTTTCACATACTTGTCCTGGCTTTTTGTGCAAGCCTTCTCAGTCCAACCATCTCTTATGGCCATCCTGGTCTTCCTAAAGAGCATGCAGCTTTGTTCATCTTTGGTGATTCACTTTTCGATGTTGGAAATAATGACTACATAAATACTTCCACTAACTTTCAAGCAAATTTCTCGCCATATGGGGAAACCTTCTTCGGGTACTCCACTGGTAGATTTTCAAATGGACGTCTAATCCCGGATATCATTGCCGTATATGCAGGATTGCCACTCATTCCACCGTATTTACAGCCTGGTTTGGACAACTATACTTATGGGGTCAACTTTGCATCAGCTGGGGCTGGCGCTCTGGCTGAAACTCATCAAGGATTTGTGATAGACCTGAAAACTCAACTCAGTTATTTCAATAAGGTGGTGAAGCAGTTGAGGCACAAGCTAGGTCATGCGGAAGCCTACACATTTCTGTCTGAAGCTGTTTACTTATTTAGCATCGGAGGCAATGATTACCTTTACCCATTCGAAACAAATTCTAGCATCTTTGAGTCTCACTCACCTGAACAATATGTTGGAATGGTCATTGGCAACCTGACCAAAGTGATCAAAAAAATCTACAAGCATGGAGGAAGAAAATTTGGGATTACAGGTGTTGCACCTCTTGGTTGTGTACCATCTGTGAGGGCAACTACATCGGGAAACACAGGCGCCTGCGTGGAAGAAATGAATGCGCTAGCGGTACTACACAACACAGAACTTTCTGAAGCGCTTTTAAAGAAGAAAGGAAAGCTCCAAGGATTCAAATATTCAAATCCAGATTTCTATACTTACCTAAATGGAGTATTTAACAATCCTGCAGATTATGGTTTCAAGGAGGGCAAGACAGCATGTTGTGGCTCTGGTCCATACAGAGGAATTTCGAGCTGTGGAGGAAAGAGAGGTGTGACAGATTACGAATTATGTGACAATGTTACTGACTATGTCTTTTTTGACTCTGTGCATCCAACTGAAAGGGTTTATGAGAAAGCCTCCGAGTTATGGTGGAGCCAAACTCCCAATGTCACAGGGTCCTCTAATAATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

365

Amino Acids

39.81

Weight (kDa)

6.55

Isoelectric Point (pI)

25.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 37 - 349 3.4e-29 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 247
AccB1I GGYRCC 1 cut(s) 716
AciI CCGC 2 cut(s) 461, 746
AcoI YGGCCR 1 cut(s) 76
AcsI RAATTY 4 cut(s) 184, 541, 644, 924
AcuI CTGAAG 2 cut(s) 504, 792
AcyI GRCGYC 2 cut(s) 244, 717
AfaI GTAC 3 cut(s) 218, 681, 750
AfeI AGCGCT 1 cut(s) 777
AfiI CCNNNNNNNGG 3 cut(s) 213, 920, 1047
AgsI TTSAA 6 cut(s) 179, 237, 421, 811, 819, 880
AjnI CCWGG 3 cut(s) 33, 82, 307
AjuI GAANNNNNNNTTGG 2 cut(s) 564, 596
AluBI AGCT 6 cut(s) 107, 350, 451, 488, 799, 933
AluI AGCT 6 cut(s) 107, 350, 451, 488, 799, 933
Alw26I GTCTC 1 cut(s) 564
Aor51HI AGCGCT 1 cut(s) 777
AoxI GGCC 1 cut(s) 76
ApeKI GCWGC 1 cut(s) 104
ApoI RAATTY 4 cut(s) 184, 541, 644, 924
AspLEI GCGC 4 cut(s) 362, 719, 742, 778
AspS9I GGNCC 2 cut(s) 911, 1077
AsuC2I CCSGG 1 cut(s) 254
AsuHPI GGTGA 3 cut(s) 134, 442, 558
AsuII TTCGAA 1 cut(s) 534
AsuNHI GCTAGC 1 cut(s) 742
AvaII GGWCC 2 cut(s) 911, 1077
BalI TGGCCA 1 cut(s) 78
BanI GGYRCC 1 cut(s) 716
BbsI GAAGAC 1 cut(s) 80
BbvI GCAGC 1 cut(s) 116
BccI CCATC 3 cut(s) 74, 87, 691
BceAI ACGGC 1 cut(s) 251
BcgI CGANNNNNNTGC 4 cut(s) 171, 205, 684, 718
BciT130I CCWGG 3 cut(s) 35, 84, 309
BclI TGATCA 1 cut(s) 612
BcnI CCSGG 1 cut(s) 254
BcoDI GTCTC 1 cut(s) 564
BfaI CTAG 3 cut(s) 452, 546, 743
BfmI CTRYAG 1 cut(s) 864
BfoI RGCGCY 3 cut(s) 363, 720, 779
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
Bme1390I CCNGG 4 cut(s) 35, 84, 254, 309
Bme18I GGWCC 2 cut(s) 911, 1077
BmgT120I GGNCC 2 cut(s) 911, 1077
BmiI GGNNCC 3 cut(s) 718, 1055, 1078
BmrFI CCNGG 4 cut(s) 35, 84, 254, 309
BmsI GCATC 4 cut(s) 353, 513, 558, 1018
BmtI GCTAGC 1 cut(s) 746
BpiI GAAGAC 1 cut(s) 80
BplI GAGNNNNNCTC 6 cut(s) 548, 580, 1022, 1054, 1045, 1077
Bpu14I TTCGAA 1 cut(s) 534
BpuMI CCSGG 1 cut(s) 254
BsaHI GRCGYC 2 cut(s) 244, 717
BsaJI CCNNGG 1 cut(s) 802
Bsc4I CCNNNNNNNGG 3 cut(s) 213, 920, 1047
Bse1I ACTGG 1 cut(s) 229
Bse3DI GCAATG 2 cut(s) 261, 520
BseBI CCWGG 3 cut(s) 35, 84, 309
BseDI CCNNGG 1 cut(s) 802
BseGI GGATG 2 cut(s) 79, 1009
BseLI CCNNNNNNNGG 3 cut(s) 213, 920, 1047
BseMI GCAATG 2 cut(s) 261, 520
BseMII CTCAG 2 cut(s) 70, 424
BseNI ACTGG 1 cut(s) 229
BseXI GCAGC 1 cut(s) 116
BseYI CCCAGC 1 cut(s) 350
BshFI GGCC 1 cut(s) 78
BshNI GGYRCC 1 cut(s) 716
BsiSI CCGG 1 cut(s) 254
BslI CCNNNNNNNGG 3 cut(s) 213, 920, 1047
BsmAI GTCTC 1 cut(s) 564
BsmI GAATGC 1 cut(s) 742
BsnI GGCC 1 cut(s) 78
Bsp119I TTCGAA 1 cut(s) 534
Bsp143I GATC 1 cut(s) 612
BspACI CCGC 2 cut(s) 461, 746
BspANI GGCC 1 cut(s) 78
BspCNI CTCAG 2 cut(s) 69, 423
BspLI GGNNCC 3 cut(s) 718, 1055, 1078
BspMAI CTGCAG 1 cut(s) 868
BspOI GCTAGC 1 cut(s) 746
BspT104I TTCGAA 1 cut(s) 534
BspT107I GGYRCC 1 cut(s) 716
BsrDI GCAATG 2 cut(s) 261, 520
BsrI ACTGG 1 cut(s) 229
BssECI CCNNGG 1 cut(s) 802
BssMI GATC 1 cut(s) 612
BssNI GRCGYC 2 cut(s) 244, 717
BssT1I CCWWGG 1 cut(s) 802
Bst2UI CCWGG 3 cut(s) 35, 84, 309
Bst4CI ACNGT 1 cut(s) 297
BstACI GRCGYC 2 cut(s) 244, 717
BstBI TTCGAA 1 cut(s) 534
BstC8I GCNNGC 5 cut(s) 49, 102, 358, 721, 744
BstDEI CTNAG 2 cut(s) 56, 410
BstF5I GGATG 2 cut(s) 79, 1009
BstH2I RGCGCY 3 cut(s) 363, 720, 779
BstHHI GCGC 4 cut(s) 362, 719, 742, 778
BstKTI GATC 1 cut(s) 615
BstMAI GTCTC 1 cut(s) 564
BstMBI GATC 1 cut(s) 612
BstMWI GCNNNNNNNGC 4 cut(s) 44, 272, 442, 510
BstNI CCWGG 3 cut(s) 35, 84, 309
BstNSI RCATGY 2 cut(s) 104, 900
BstSCI CCNGG 4 cut(s) 33, 82, 252, 307
BstSFI CTRYAG 1 cut(s) 864
BstV1I GCAGC 1 cut(s) 116
BstV2I GAAGAC 1 cut(s) 80
BsuRI GGCC 1 cut(s) 78
BtsCI GGATG 2 cut(s) 79, 1009
BtsIMutI CAGTG 1 cut(s) 222
Cac8I GCNNGC 5 cut(s) 49, 102, 358, 721, 744
CfoI GCGC 4 cut(s) 362, 719, 742, 778
Cfr13I GGNCC 2 cut(s) 911, 1077
Csp6I GTAC 3 cut(s) 217, 680, 749
CviAII CATG 4 cut(s) 101, 458, 632, 897
CviQI GTAC 3 cut(s) 217, 680, 749
DdeI CTNAG 2 cut(s) 56, 410
DinI GGCGCC 1 cut(s) 718
DpnI GATC 1 cut(s) 614
DpnII GATC 1 cut(s) 612
DraI TTTAAA 1 cut(s) 783
EaeI YGGCCR 1 cut(s) 76
Eco130I CCWWGG 1 cut(s) 802
Eco32I GATATC 1 cut(s) 259
Eco47I GGWCC 2 cut(s) 911, 1077
Eco47III AGCGCT 1 cut(s) 777
Eco57I CTGAAG 2 cut(s) 504, 792
EcoO109I RGGNCCY 1 cut(s) 1077
EcoRII CCWGG 3 cut(s) 33, 82, 307
EcoRV GATATC 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 802
EgeI GGCGCC 1 cut(s) 718
EheI GGCGCC 1 cut(s) 718
ErhI CCWWGG 1 cut(s) 802
FaeI CATG 4 cut(s) 104, 461, 635, 900
FatI CATG 4 cut(s) 100, 457, 631, 896
FauNDI CATATG 1 cut(s) 196
FbaI TGATCA 1 cut(s) 612
Fnu4HI GCNGC 1 cut(s) 105
FokI GGATG 2 cut(s) 66, 996
Fsp4HI GCNGC 1 cut(s) 105
FspBI CTAG 3 cut(s) 452, 546, 743
GlaI GCGC 4 cut(s) 361, 718, 741, 777
GluI GCNGC 1 cut(s) 105
GsaI CCCAGC 1 cut(s) 354
HaeII RGCGCY 3 cut(s) 363, 720, 779
HaeIII GGCC 1 cut(s) 78
HapII CCGG 1 cut(s) 254
HhaI GCGC 4 cut(s) 362, 719, 742, 778
Hin1I GRCGYC 2 cut(s) 244, 717
Hin1II CATG 4 cut(s) 104, 461, 635, 900
Hin6I GCGC 4 cut(s) 360, 717, 740, 776
HinP1I GCGC 4 cut(s) 360, 717, 740, 776
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HinfI GANTC 4 cut(s) 125, 557, 807, 1001
HpaII CCGG 1 cut(s) 254
HphI GGTGA 3 cut(s) 134, 442, 558
Hpy166II GTNNAC 3 cut(s) 337, 493, 680
Hpy188I TCNGA 4 cut(s) 484, 509, 772, 1042
Hpy188III TCNNGA 2 cut(s) 705, 824
Hpy8I GTNNAC 3 cut(s) 337, 493, 680
HpyAV CCTTC 2 cut(s) 62, 217
HpyCH4III ACNGT 1 cut(s) 297
HpyCH4IV ACGT 1 cut(s) 244
HpyCH4V TGCA 7 cut(s) 47, 104, 275, 344, 665, 866, 1009
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 272, 442, 510
HpyF3I CTNAG 2 cut(s) 56, 410
HpySE526I ACGT 1 cut(s) 244
Hsp92I GRCGYC 2 cut(s) 244, 717
Hsp92II CATG 4 cut(s) 104, 461, 635, 900
HspAI GCGC 4 cut(s) 360, 717, 740, 776
KasI GGCGCC 1 cut(s) 716
Ksp22I TGATCA 1 cut(s) 612
Kzo9I GATC 1 cut(s) 612
LmnI GCTCC 2 cut(s) 804, 1053
Lsp1109I GCAGC 1 cut(s) 116
LweI GCATC 4 cut(s) 353, 513, 558, 1018
MaeI CTAG 3 cut(s) 452, 546, 743
MaeII ACGT 1 cut(s) 244
MaeIII GTNAC 4 cut(s) 952, 971, 979, 1069
MalI GATC 1 cut(s) 614
MboI GATC 1 cut(s) 612
MboII GAAGA 5 cut(s) 80, 202, 651, 740, 799
MfeI CAATTG 1 cut(s) 6
MlsI TGGCCA 1 cut(s) 78
MluCI AATT 6 cut(s) 6, 184, 541, 644, 924, 965
MluNI TGGCCA 1 cut(s) 78
Mly113I GGCGCC 1 cut(s) 717
MlyI GAGTC 2 cut(s) 566, 995
MmeI TCCRAC 4 cut(s) 86, 121, 562, 1037
Mox20I TGGCCA 1 cut(s) 78
MscI TGGCCA 1 cut(s) 78
MseI TTAA 3 cut(s) 14, 782, 855
Msp20I TGGCCA 1 cut(s) 78
MspA1I CMGCKG 1 cut(s) 350
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 4 cut(s) 35, 84, 254, 309
MunI CAATTG 1 cut(s) 6
Mva1269I GAATGC 1 cut(s) 742
MvaI CCWGG 3 cut(s) 35, 84, 309
MwoI GCNNNNNNNGC 4 cut(s) 44, 272, 442, 510
NarI GGCGCC 1 cut(s) 717
NciI CCSGG 1 cut(s) 254
NdeI CATATG 1 cut(s) 196
NdeII GATC 1 cut(s) 612
NheI GCTAGC 1 cut(s) 742
NlaIII CATG 4 cut(s) 104, 461, 635, 900
NlaIV GGNNCC 3 cut(s) 718, 1055, 1078
NmuCI GTSAC 3 cut(s) 952, 971, 1069
NspI RCATGY 2 cut(s) 104, 900
NspV TTCGAA 1 cut(s) 534
PaeI GCATGC 1 cut(s) 104
PctI GAATGC 1 cut(s) 742
PfeI GAWTC 2 cut(s) 125, 807
PflFI GACNNNGTC 1 cut(s) 989
PfoI TCCNGGA 1 cut(s) 252
PkrI GCNGC 1 cut(s) 106
PleI GAGTC 2 cut(s) 565, 995
PluTI GGCGCC 1 cut(s) 720
PpsI GAGTC 2 cut(s) 565, 995
PpuMI RGGWCCY 1 cut(s) 1077
Psp5II RGGWCCY 1 cut(s) 1077
Psp6I CCWGG 3 cut(s) 33, 82, 307
PspFI CCCAGC 1 cut(s) 350
PspGI CCWGG 3 cut(s) 33, 82, 307
PspN4I GGNNCC 3 cut(s) 718, 1055, 1078
PspPI GGNCC 2 cut(s) 911, 1077
PspPPI RGGWCCY 1 cut(s) 1077
PstI CTGCAG 1 cut(s) 868
PsyI GACNNNGTC 1 cut(s) 989
PvuII CAGCTG 1 cut(s) 350
RsaI GTAC 3 cut(s) 218, 681, 750
RsaNI GTAC 3 cut(s) 217, 680, 749
SaqAI TTAA 3 cut(s) 14, 782, 855
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 1 cut(s) 612
Sau96I GGNCC 2 cut(s) 911, 1077
SchI GAGTC 2 cut(s) 566, 995
ScrFI CCNGG 4 cut(s) 35, 84, 254, 309
SfaNI GCATC 4 cut(s) 353, 513, 558, 1018
SfcI CTRYAG 1 cut(s) 864
SfoI GGCGCC 1 cut(s) 718
SfuI TTCGAA 1 cut(s) 534
SinI GGWCC 2 cut(s) 911, 1077
SphI GCATGC 1 cut(s) 104
Sse9I AATT 6 cut(s) 6, 184, 541, 644, 924, 965
SsiI CCGC 2 cut(s) 461, 746
SspDI GGCGCC 1 cut(s) 716
SspI AATATT 1 cut(s) 815
SspMI CTAG 3 cut(s) 452, 546, 743
StyD4I CCNGG 4 cut(s) 33, 82, 252, 307
StyI CCWWGG 1 cut(s) 802
TaaI ACNGT 1 cut(s) 297
TaiI ACGT 1 cut(s) 247
TaqI TCGA 3 cut(s) 135, 534, 929
TasI AATT 6 cut(s) 6, 184, 541, 644, 924, 965
TfiI GAWTC 2 cut(s) 125, 807
Tru1I TTAA 3 cut(s) 14, 782, 855
Tru9I TTAA 3 cut(s) 14, 782, 855
TscAI CASTG 1 cut(s) 229
TseFI GTSAC 3 cut(s) 952, 971, 1069
TseI GCWGC 1 cut(s) 104
Tsp45I GTSAC 3 cut(s) 952, 971, 1069
TspDTI ATGAA 2 cut(s) 103, 749
TspRI CASTG 1 cut(s) 229
Tth111I GACNNNGTC 1 cut(s) 989
VpaK11BI GGWCC 2 cut(s) 911, 1077
XapI RAATTY 4 cut(s) 184, 541, 644, 924
XceI RCATGY 2 cut(s) 104, 900
XspI CTAG 3 cut(s) 452, 546, 743
ZraI GACGTC 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.