MD09G1175100.v1.1

GDSL esterase lipase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000193
Physical Location & Seq
Forward (+)
14885362 .. 14887658
2297 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1175100.v1.1.491

Sequence Viewer

Length: 1065 bp
ATGGCATCTTTGAGGTTAAGAATTTCTATCCTAGCTTTCTGTACTTGCCTAGTTATTCAGTGCAGCTGCTATGGCCATTCTGTGCTTCAGAAAAAGCATGCAGCCCTATTCATCTTTGGTGATTCACTTTATGATCCTGGAAATAATAACTACATAAACACCACCACTGATTTCCAGGCCAATTGGTTCCCATATGGTGAGACCTTCTTCAAGTATCCAACTGGCAGATTTTGCGATGGACGTTTAATCCCAGATTTTCTTGCTCAGTATGCCAAGTTACCATTTATACCAGCATATTTACAACCTGGGTTGAACAACTATTCTAATGGGGTGAACTTTGCTTCTGGTGGAGCTGGTGCTCTAGTTGAAAGTCATCAGGGATTTGTGACAGACCTTAAAACTCAAGTAAGTCAATTCAGGAAGGTGGAGAAGCTGTTGAGGCACAAACTAGGTGATGCAGAAGCCTACACAGTGCTCTCCAAAGCTGTTTACATAATTAGCATTGGAAGCAATGACTATATTTCTCCCTTAGCATCCAATTTTAGCAATGAAGAATATGTTGGCTTGGTTATTGGCAACCTGACAATTTGGATCAAAGAAATATACAAGAAAGGAGGAAGGAAATTTGGATTTTCAACCTTGCCGCCTCTCAATGAAATACCGAGCCTGAGAGTACATAAACCAGGGGACACAAGCCCCTCAGCGGAAGAAGTTATACCACTAGTGAAACTACACAATAAAGCACTTGGAAAACTCCTCCTAAAGCTGAAGAGAGAGCTCGAAGGATTCAAATACTCAACCATTGATCTCCATACATACCTAAAACAAATTATAAATCGTCCATCAAAATATGGCTTCAGTGAAGGAAAGACGGCATGTTGTGGCTCTGGTCCATACGGAGCAATTAATTCTTGTGGAGGGAAGAGAGGAGTGACTAAGTATCAGTTGTGTGACAATGTTGCTGAATATGTATTTTTCGACTCTTTCCATCCAACCGAAAAGGTTTACCGGAAACTATCCAAGTTATGGTGGAGGCATAACTTGAAGGAGCTATTTGAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

355

Amino Acids

39.77

Weight (kDa)

9.19

Isoelectric Point (pI)

31.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 36 - 342 1.3e-31 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 833
AccB7I CCANNNNNTGG 1 cut(s) 1026
AciI CCGC 2 cut(s) 644, 704
AclWI GGATC 2 cut(s) 128, 599
AcoI YGGCCR 1 cut(s) 73
AcsI RAATTY 2 cut(s) 21, 623
AcuI CTGAAG 3 cut(s) 71, 788, 841
AfaI GTAC 2 cut(s) 43, 675
AfiI CCNNNNNNNGG 2 cut(s) 703, 1026
AgsI TTSAA 7 cut(s) 211, 313, 368, 636, 790, 1045, 1058
AhlI ACTAGT 1 cut(s) 721
AjnI CCWGG 4 cut(s) 136, 174, 304, 682
AjuI GAANNNNNNNTTGG 2 cut(s) 543, 575
AluBI AGCT 8 cut(s) 35, 66, 353, 433, 485, 766, 778, 1051
AluI AGCT 8 cut(s) 35, 66, 353, 433, 485, 766, 778, 1051
Alw21I GWGCWC 3 cut(s) 361, 477, 780
Alw26I GTCTC 1 cut(s) 194
AlwI GGATC 2 cut(s) 128, 599
AoxI GGCC 2 cut(s) 73, 177
ApeKI GCWGC 3 cut(s) 63, 66, 101
ApoI RAATTY 2 cut(s) 21, 623
AseI ATTAAT 1 cut(s) 906
AspS9I GGNCC 1 cut(s) 890
AsuHPI GGTGA 4 cut(s) 131, 209, 343, 464
AvaII GGWCC 1 cut(s) 890
BalI TGGCCA 1 cut(s) 75
BanII GRGCYC 1 cut(s) 780
BarI GAAGNNNNNNTAC 2 cut(s) 699, 731
Bbv12I GWGCWC 3 cut(s) 361, 477, 780
BbvCI CCTCAGC 1 cut(s) 700
BbvI GCAGC 3 cut(s) 53, 75, 113
BccI CCATC 3 cut(s) 230, 850, 996
BceAI ACGGC 1 cut(s) 888
BciT130I CCWGG 4 cut(s) 138, 176, 306, 684
BciVI GTATCC 1 cut(s) 225
BcoDI GTCTC 1 cut(s) 194
BcuI ACTAGT 1 cut(s) 721
BfaI CTAG 5 cut(s) 32, 50, 362, 449, 722
BfuI GTATCC 1 cut(s) 225
BisI GCNGC 4 cut(s) 64, 67, 102, 644
BlsI GCNGC 4 cut(s) 65, 68, 103, 645
Bme1390I CCNGG 4 cut(s) 138, 176, 306, 684
Bme18I GGWCC 1 cut(s) 890
BmgT120I GGNCC 1 cut(s) 890
BmiI GGNNCC 1 cut(s) 188
BmrFI CCNGG 4 cut(s) 138, 176, 306, 684
BmsI GCATC 3 cut(s) 14, 445, 542
Bpu10I CCTNAGC 2 cut(s) 529, 700
BpuEI CTTGAG 1 cut(s) 387
BsaI GGTCTC 1 cut(s) 194
BsaJI CCNNGG 2 cut(s) 305, 683
BsaWI WCCGGW 1 cut(s) 1008
BsaXI ACNNNNNCTCC 2 cut(s) 419, 449
Bsc4I CCNNNNNNNGG 2 cut(s) 703, 1026
Bse1I ACTGG 1 cut(s) 226
Bse3DI GCAATG 2 cut(s) 517, 553
BseBI CCWGG 4 cut(s) 138, 176, 306, 684
BseDI CCNNGG 2 cut(s) 305, 683
BseGI GGATG 2 cut(s) 533, 988
BseLI CCNNNNNNNGG 2 cut(s) 703, 1026
BseMI GCAATG 2 cut(s) 517, 553
BseMII CTCAG 3 cut(s) 278, 659, 714
BseNI ACTGG 1 cut(s) 226
BseRI GAGGAG 2 cut(s) 746, 942
BseXI GCAGC 3 cut(s) 53, 75, 113
BsgI GTGCAG 1 cut(s) 82
BshFI GGCC 2 cut(s) 75, 179
BsiHKAI GWGCWC 3 cut(s) 361, 477, 780
BsiSI CCGG 1 cut(s) 1009
BslFI GGGAC 1 cut(s) 701
BslI CCNNNNNNNGG 2 cut(s) 703, 1026
BsmAI GTCTC 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 701
BsnI GGCC 2 cut(s) 75, 179
Bso31I GGTCTC 1 cut(s) 194
Bsp1286I GDGCHC 3 cut(s) 361, 477, 780
Bsp143I GATC 3 cut(s) 133, 591, 805
BspACI CCGC 2 cut(s) 644, 704
BspANI GGCC 2 cut(s) 75, 179
BspCNI CTCAG 3 cut(s) 277, 660, 713
BspLI GGNNCC 1 cut(s) 188
BspPI GGATC 2 cut(s) 128, 599
BspTNI GGTCTC 1 cut(s) 194
BsrDI GCAATG 2 cut(s) 517, 553
BsrI ACTGG 1 cut(s) 226
BssECI CCNNGG 2 cut(s) 305, 683
BssMI GATC 3 cut(s) 133, 591, 805
Bst2UI CCWGG 4 cut(s) 138, 176, 306, 684
Bst4CI ACNGT 1 cut(s) 472
Bst6I CTCTTC 2 cut(s) 764, 917
BstAPI GCANNNNNTGC 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 5 cut(s) 264, 529, 668, 700, 936
BstF5I GGATG 2 cut(s) 533, 988
BstKTI GATC 3 cut(s) 136, 594, 808
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 3 cut(s) 133, 591, 805
BstMWI GCNNNNNNNGC 5 cut(s) 72, 231, 269, 439, 507
BstNI CCWGG 4 cut(s) 138, 176, 306, 684
BstNSI RCATGY 2 cut(s) 101, 879
BstSCI CCNGG 4 cut(s) 136, 174, 304, 682
BstV1I GCAGC 3 cut(s) 53, 75, 113
BsuI GTATCC 1 cut(s) 225
BsuRI GGCC 2 cut(s) 75, 179
BtgZI GCGATG 1 cut(s) 249
BtsCI GGATG 2 cut(s) 533, 988
BtsIMutI CAGTG 4 cut(s) 65, 165, 477, 865
Cac8I GCNNGC 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 890
Csp6I GTAC 2 cut(s) 42, 674
CviAII CATG 2 cut(s) 98, 876
CviQI GTAC 2 cut(s) 42, 674
DdeI CTNAG 5 cut(s) 264, 529, 668, 700, 936
DpnI GATC 3 cut(s) 135, 593, 807
DpnII GATC 3 cut(s) 133, 591, 805
EaeI YGGCCR 1 cut(s) 73
Eam1104I CTCTTC 2 cut(s) 764, 917
EarI CTCTTC 2 cut(s) 764, 917
Ecl136II GAGCTC 1 cut(s) 778
Eco24I GRGCYC 1 cut(s) 780
Eco31I GGTCTC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 890
Eco53kI GAGCTC 1 cut(s) 778
Eco57I CTGAAG 3 cut(s) 71, 788, 841
EcoICRI GAGCTC 1 cut(s) 778
EcoRII CCWGG 4 cut(s) 136, 174, 304, 682
EcoT38I GRGCYC 1 cut(s) 780
FaeI CATG 2 cut(s) 101, 879
FaqI GGGAC 1 cut(s) 701
FatI CATG 2 cut(s) 97, 875
FauNDI CATATG 1 cut(s) 193
Fnu4HI GCNGC 4 cut(s) 64, 67, 102, 644
FokI GGATG 2 cut(s) 520, 975
FriOI GRGCYC 1 cut(s) 780
Fsp4HI GCNGC 4 cut(s) 64, 67, 102, 644
FspBI CTAG 5 cut(s) 32, 50, 362, 449, 722
GluI GCNGC 4 cut(s) 64, 67, 102, 644
HaeIII GGCC 2 cut(s) 75, 179
HapII CCGG 1 cut(s) 1009
Hin1II CATG 2 cut(s) 101, 879
HinfI GANTC 3 cut(s) 122, 786, 980
HpaII CCGG 1 cut(s) 1009
HphI GGTGA 4 cut(s) 131, 209, 343, 464
Hpy166II GTNNAC 3 cut(s) 334, 490, 1006
Hpy188I TCNGA 1 cut(s) 90
Hpy188III TCNNGA 1 cut(s) 418
Hpy8I GTNNAC 3 cut(s) 334, 490, 1006
HpyAV CCTTC 6 cut(s) 214, 415, 612, 776, 857, 1039
HpyCH4III ACNGT 1 cut(s) 472
HpyCH4IV ACGT 1 cut(s) 241
HpyCH4V TGCA 3 cut(s) 63, 101, 458
HpyF10VI GCNNNNNNNGC 5 cut(s) 72, 231, 269, 439, 507
HpyF3I CTNAG 5 cut(s) 264, 529, 668, 700, 936
HpySE526I ACGT 1 cut(s) 241
Hsp92II CATG 2 cut(s) 101, 879
Kzo9I GATC 3 cut(s) 133, 591, 805
LmnI GCTCC 3 cut(s) 350, 899, 1048
Lsp1109I GCAGC 3 cut(s) 53, 75, 113
LweI GCATC 3 cut(s) 14, 445, 542
MaeI CTAG 5 cut(s) 32, 50, 362, 449, 722
MaeII ACGT 1 cut(s) 241
MaeIII GTNAC 4 cut(s) 276, 385, 931, 950
MalI GATC 3 cut(s) 135, 593, 807
MboI GATC 3 cut(s) 133, 591, 805
MboII GAAGA 5 cut(s) 199, 563, 719, 781, 934
MfeI CAATTG 1 cut(s) 181
MhlI GDGCHC 3 cut(s) 361, 477, 780
MlsI TGGCCA 1 cut(s) 75
MluNI TGGCCA 1 cut(s) 75
MlyI GAGTC 1 cut(s) 974
MmeI TCCRAC 2 cut(s) 242, 1016
MnlI CCTC 9 cut(s) 6, 432, 608, 657, 709, 767, 911, 920, 1026
Mox20I TGGCCA 1 cut(s) 75
MscI TGGCCA 1 cut(s) 75
MseI TTAA 4 cut(s) 17, 245, 396, 906
Msp20I TGGCCA 1 cut(s) 75
MspA1I CMGCKG 2 cut(s) 66, 704
MspI CCGG 1 cut(s) 1009
MspR9I CCNGG 4 cut(s) 138, 176, 306, 684
MunI CAATTG 1 cut(s) 181
MvaI CCWGG 4 cut(s) 138, 176, 306, 684
MwoI GCNNNNNNNGC 5 cut(s) 72, 231, 269, 439, 507
NdeI CATATG 1 cut(s) 193
NdeII GATC 3 cut(s) 133, 591, 805
NlaIII CATG 2 cut(s) 101, 879
NlaIV GGNNCC 1 cut(s) 188
NmuCI GTSAC 3 cut(s) 385, 931, 950
NspI RCATGY 2 cut(s) 101, 879
PaeI GCATGC 1 cut(s) 101
PfeI GAWTC 2 cut(s) 122, 786
PflMI CCANNNNNTGG 1 cut(s) 1026
PfoI TCCNGGA 1 cut(s) 136
PkrI GCNGC 4 cut(s) 65, 68, 103, 645
PleI GAGTC 1 cut(s) 974
PpsI GAGTC 1 cut(s) 974
PshBI ATTAAT 1 cut(s) 906
PsiI TTATAA 1 cut(s) 833
Psp124BI GAGCTC 1 cut(s) 780
Psp6I CCWGG 4 cut(s) 136, 174, 304, 682
PspGI CCWGG 4 cut(s) 136, 174, 304, 682
PspN4I GGNNCC 1 cut(s) 188
PspPI GGNCC 1 cut(s) 890
PvuII CAGCTG 1 cut(s) 66
RsaI GTAC 2 cut(s) 43, 675
RsaNI GTAC 2 cut(s) 42, 674
SacI GAGCTC 1 cut(s) 780
SaqAI TTAA 4 cut(s) 17, 245, 396, 906
SatI GCNGC 4 cut(s) 64, 67, 102, 644
Sau3AI GATC 3 cut(s) 133, 591, 805
Sau96I GGNCC 1 cut(s) 890
SchI GAGTC 1 cut(s) 974
ScrFI CCNGG 4 cut(s) 138, 176, 306, 684
SduI GDGCHC 3 cut(s) 361, 477, 780
SfaNI GCATC 3 cut(s) 14, 445, 542
SinI GGWCC 1 cut(s) 890
SmlI CTYRAG 1 cut(s) 402
SmoI CTYRAG 1 cut(s) 402
SpeI ACTAGT 1 cut(s) 721
SphI GCATGC 1 cut(s) 101
SsiI CCGC 2 cut(s) 644, 704
SspMI CTAG 5 cut(s) 32, 50, 362, 449, 722
SstI GAGCTC 1 cut(s) 780
StyD4I CCNGG 4 cut(s) 136, 174, 304, 682
TaaI ACNGT 1 cut(s) 472
TaiI ACGT 1 cut(s) 244
TaqI TCGA 2 cut(s) 780, 978
TatI WGTACW 2 cut(s) 41, 673
TauI GCSGC 1 cut(s) 646
TfiI GAWTC 2 cut(s) 122, 786
Tru1I TTAA 4 cut(s) 17, 245, 396, 906
Tru9I TTAA 4 cut(s) 17, 245, 396, 906
TscAI CASTG 4 cut(s) 65, 172, 477, 865
TseFI GTSAC 3 cut(s) 385, 931, 950
TseI GCWGC 3 cut(s) 63, 66, 101
Tsp45I GTSAC 3 cut(s) 385, 931, 950
TspDTI ATGAA 3 cut(s) 100, 564, 669
TspGWI ACGGA 1 cut(s) 912
TspRI CASTG 4 cut(s) 65, 172, 477, 865
Van91I CCANNNNNTGG 1 cut(s) 1026
VpaK11BI GGWCC 1 cut(s) 890
VspI ATTAAT 1 cut(s) 906
XapI RAATTY 2 cut(s) 21, 623
XceI RCATGY 2 cut(s) 101, 879
XspI CTAG 5 cut(s) 32, 50, 362, 449, 722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.