Prupe.3G033200_v2.0.a1

GDSL esterase lipase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000193
Physical Location & Seq
Forward (+)
2455292 .. 2457066
1775 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G033200.1

Sequence Viewer

Length: 1074 bp
ATGGCAGCTATCAGGTTTCAAATCTATATCTTGGCTTTCTGTGCAGGCCTTGTTATTCAAAGCAGCTGCTGCAATGGCCATTCTGGGCTTCAGAAAAAACGTGCAGCCCTGTTCGTCTTTGGTGATTCACTATATGATGCCGGAAATAATAACTACATAAACACTACCACTGATTTCCAGGCAAGTTGGTTTCCATATGGCGAAACATTCTTCAGGTACCCAACTGGTAGATTTTCTGATGGGCGTACTATCCCAGATTTCATTGCTGAGTATGCTAAGTTGCCATTTATACCAGTATATTTACAACCAGGGCTCAACGACTATACTTATGGGGTGAACTTTGCTTCTGGTGGAGCTGGTGCTCTAGTTGAAACCTATCAAGGATCTGTGATGGACCTTAAAACTCAAATGAGTCAATTCAAGAAGGTGGAGAAGCAGTTGAGACAGAAACTAGGTCATGCAGAAGCCTACACATTGGTATCCGAAGCTGTCTACATAATCAACATTGGAAACAATGATTATGTTTCCCCATTAGCAACCAATACCAGCCATGAAGAATATGTTGACTGGGTTATTGGCAACCTGACAAGTTGGATAGAAGATATATACCAGAAAGGAGGAAGGAAATTTGCACTTTCAAGCTTGGCACCTTTCGCTTCTATGCCACTCATGAGAACAACTCAACCAGCAGGATCCACCGCAGGCCCTTCCAGGAAAGAAGTTGCAGCACTTGTGAAACTACACAATAGAGTACTTGCTAAAGTCCTCCTAAAGTTGAAAAAAGAGCTCCAAGGATTTAAATACTCAAAGCTTAATCTCTACACTTACCTAAAGGAAAGAATTAATCATCCATTAAAATATGGTTTCAAGGAAGGAAAGATGGCGTGCTGTGGCTCTGGTGCATACAGAGGAATTTATTCCTGTGGAGGGAAGAGAAGTGTGACTGAGTATCTGTTATGTGACAATGCTACTGAGTTCGTCTTCTTTGACTGTGCCCATCCAACTGAAAGGGTTAACAAGCAATTGTCCAAGTTATGGTGGAGCAATAACTTGAAGGAGCTATTTGAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

358

Amino Acids

40.09

Weight (kDa)

9.04

Isoelectric Point (pI)

33.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 216
AccB1I GGYRCC 2 cut(s) 216, 646
AccB7I CCANNNNNTGG 1 cut(s) 1035
AccI GTMKAC 1 cut(s) 492
AciI CCGC 1 cut(s) 699
AclWI GGATC 3 cut(s) 391, 687, 700
AcoI YGGCCR 1 cut(s) 76
AcsI RAATTY 2 cut(s) 626, 912
AcuI CTGAAG 2 cut(s) 74, 196
AfaI GTAC 3 cut(s) 218, 247, 753
AfiI CCNNNNNNNGG 2 cut(s) 927, 1035
AgsI TTSAA 9 cut(s) 20, 59, 371, 421, 639, 778, 868, 1054, 1067
AjnI CCWGG 3 cut(s) 177, 307, 710
AluBI AGCT 8 cut(s) 8, 66, 356, 488, 642, 787, 811, 1060
AluI AGCT 8 cut(s) 8, 66, 356, 488, 642, 787, 811, 1060
Alw21I GWGCWC 2 cut(s) 364, 789
Alw26I GTCTC 1 cut(s) 436
AlwI GGATC 3 cut(s) 391, 687, 700
AlwNI CAGNNNCTG 1 cut(s) 69
AoxI GGCC 3 cut(s) 46, 76, 703
ApeKI GCWGC 6 cut(s) 5, 63, 66, 69, 104, 725
ApoI RAATTY 2 cut(s) 626, 912
AseI ATTAAT 1 cut(s) 843
Asp700I GAANNNNTTC 1 cut(s) 916
Asp718I GGTACC 1 cut(s) 216
AspS9I GGNCC 2 cut(s) 394, 704
AsuHPI GGTGA 2 cut(s) 134, 346
AvaII GGWCC 1 cut(s) 394
BaeGI GKGCMC 1 cut(s) 997
BaeI ACNNNNGTAYC 2 cut(s) 462, 495
BalI TGGCCA 1 cut(s) 78
BamHI GGATCC 1 cut(s) 692
BanI GGYRCC 2 cut(s) 216, 646
BanII GRGCYC 2 cut(s) 315, 789
BbsI GAAGAC 1 cut(s) 973
Bbv12I GWGCWC 2 cut(s) 364, 789
BbvI GCAGC 6 cut(s) 17, 53, 56, 75, 116, 737
BccI CCATC 4 cut(s) 233, 385, 874, 1005
BciT130I CCWGG 3 cut(s) 179, 309, 712
BciVI GTATCC 1 cut(s) 490
BcoDI GTCTC 1 cut(s) 436
BfaI CTAG 2 cut(s) 365, 452
BfuI GTATCC 1 cut(s) 490
BisI GCNGC 6 cut(s) 6, 64, 67, 70, 105, 726
BlsI GCNGC 6 cut(s) 7, 65, 68, 71, 106, 727
BmcAI AGTACT 1 cut(s) 753
Bme1390I CCNGG 3 cut(s) 179, 309, 712
Bme18I GGWCC 1 cut(s) 394
BmgT120I GGNCC 2 cut(s) 394, 704
BmiI GGNNCC 3 cut(s) 218, 648, 694
BmrFI CCNGG 3 cut(s) 179, 309, 712
BmrI ACTGGG 1 cut(s) 577
BmsI GCATC 1 cut(s) 127
BmuI ACTGGG 1 cut(s) 577
BpiI GAAGAC 1 cut(s) 973
BplI GAGNNNNNCTC 2 cut(s) 664, 696
BsaJI CCNNGG 2 cut(s) 308, 790
BsaXI ACNNNNNCTCC 2 cut(s) 422, 452
Bsc4I CCNNNNNNNGG 2 cut(s) 927, 1035
Bse1I ACTGG 3 cut(s) 229, 293, 572
Bse3DI GCAATG 2 cut(s) 79, 261
BseBI CCWGG 3 cut(s) 179, 309, 712
BseDI CCNNGG 2 cut(s) 308, 790
BseGI GGATG 2 cut(s) 847, 997
BseLI CCNNNNNNNGG 2 cut(s) 927, 1035
BseMI GCAATG 2 cut(s) 79, 261
BseMII CTCAG 3 cut(s) 258, 936, 963
BseNI ACTGG 3 cut(s) 229, 293, 572
BseSI GKGCMC 1 cut(s) 997
BseXI GCAGC 6 cut(s) 17, 53, 56, 75, 116, 737
BsgI GTGCAG 2 cut(s) 63, 123
BshFI GGCC 3 cut(s) 48, 78, 705
BshNI GGYRCC 2 cut(s) 216, 646
BsiHKAI GWGCWC 2 cut(s) 364, 789
BsiSI CCGG 1 cut(s) 141
BslI CCNNNNNNNGG 2 cut(s) 927, 1035
BsmAI GTCTC 1 cut(s) 436
BsnI GGCC 3 cut(s) 48, 78, 705
Bsp1286I GDGCHC 4 cut(s) 315, 364, 789, 997
Bsp143I GATC 2 cut(s) 383, 692
BspACI CCGC 1 cut(s) 699
BspANI GGCC 3 cut(s) 48, 78, 705
BspCNI CTCAG 3 cut(s) 259, 937, 964
BspHI TCATGA 1 cut(s) 669
BspLI GGNNCC 3 cut(s) 218, 648, 694
BspPI GGATC 3 cut(s) 391, 687, 700
BspT107I GGYRCC 2 cut(s) 216, 646
BsrDI GCAATG 2 cut(s) 79, 261
BsrI ACTGG 3 cut(s) 229, 293, 572
BssECI CCNNGG 2 cut(s) 308, 790
BssMI GATC 2 cut(s) 383, 692
BssT1I CCWWGG 1 cut(s) 790
Bst2UI CCWGG 3 cut(s) 179, 309, 712
Bst4CI ACNGT 1 cut(s) 992
Bst6I CTCTTC 1 cut(s) 926
BstAPI GCANNNNNTGC 1 cut(s) 69
BstC8I GCNNGC 3 cut(s) 46, 703, 886
BstDEI CTNAG 4 cut(s) 267, 276, 945, 972
BstF5I GGATG 2 cut(s) 847, 997
BstKTI GATC 2 cut(s) 386, 695
BstMAI GTCTC 1 cut(s) 436
BstMBI GATC 2 cut(s) 383, 692
BstMWI GCNNNNNNNGC 5 cut(s) 41, 69, 75, 272, 653
BstNI CCWGG 3 cut(s) 179, 309, 712
BstSCI CCNGG 3 cut(s) 177, 307, 710
BstSLI GKGCMC 1 cut(s) 997
BstV1I GCAGC 6 cut(s) 17, 53, 56, 75, 116, 737
BstV2I GAAGAC 1 cut(s) 973
BstX2I RGATCY 2 cut(s) 383, 692
BstYI RGATCY 2 cut(s) 383, 692
BsuI GTATCC 1 cut(s) 490
BsuRI GGCC 3 cut(s) 48, 78, 705
BtsCI GGATG 2 cut(s) 847, 997
BtsIMutI CAGTG 1 cut(s) 168
Cac8I GCNNGC 3 cut(s) 46, 703, 886
CaiI CAGNNNCTG 1 cut(s) 69
CciI TCATGA 1 cut(s) 669
Cfr13I GGNCC 2 cut(s) 394, 704
Csp6I GTAC 3 cut(s) 217, 246, 752
CviAII CATG 3 cut(s) 458, 551, 670
CviQI GTAC 3 cut(s) 217, 246, 752
DdeI CTNAG 4 cut(s) 267, 276, 945, 972
DpnI GATC 2 cut(s) 385, 694
DpnII GATC 2 cut(s) 383, 692
DraI TTTAAA 1 cut(s) 799
EaeI YGGCCR 1 cut(s) 76
Eam1104I CTCTTC 1 cut(s) 926
EarI CTCTTC 1 cut(s) 926
Ecl136II GAGCTC 1 cut(s) 787
Eco130I CCWWGG 1 cut(s) 790
Eco147I AGGCCT 1 cut(s) 48
Eco24I GRGCYC 2 cut(s) 315, 789
Eco47I GGWCC 1 cut(s) 394
Eco53kI GAGCTC 1 cut(s) 787
Eco57I CTGAAG 2 cut(s) 74, 196
EcoICRI GAGCTC 1 cut(s) 787
EcoO109I RGGNCCY 1 cut(s) 704
EcoRII CCWGG 3 cut(s) 177, 307, 710
EcoT14I CCWWGG 1 cut(s) 790
EcoT38I GRGCYC 2 cut(s) 315, 789
ErhI CCWWGG 1 cut(s) 790
FaeI CATG 3 cut(s) 461, 554, 673
FatI CATG 3 cut(s) 457, 550, 669
FauNDI CATATG 1 cut(s) 196
FblI GTMKAC 1 cut(s) 492
Fnu4HI GCNGC 6 cut(s) 6, 64, 67, 70, 105, 726
FokI GGATG 2 cut(s) 834, 984
FriOI GRGCYC 2 cut(s) 315, 789
Fsp4HI GCNGC 6 cut(s) 6, 64, 67, 70, 105, 726
FspBI CTAG 2 cut(s) 365, 452
GluI GCNGC 6 cut(s) 6, 64, 67, 70, 105, 726
HaeIII GGCC 3 cut(s) 48, 78, 705
HapII CCGG 1 cut(s) 141
Hin1II CATG 3 cut(s) 461, 554, 673
HincII GTYRAC 2 cut(s) 565, 1015
HindII GTYRAC 2 cut(s) 565, 1015
HindIII AAGCTT 2 cut(s) 640, 809
HinfI GANTC 2 cut(s) 125, 412
HpaI GTTAAC 1 cut(s) 1015
HpaII CCGG 1 cut(s) 141
HphI GGTGA 2 cut(s) 134, 346
Hpy166II GTNNAC 4 cut(s) 337, 493, 565, 1015
Hpy188I TCNGA 3 cut(s) 93, 238, 484
Hpy188III TCNNGA 2 cut(s) 421, 670
Hpy8I GTNNAC 4 cut(s) 337, 493, 565, 1015
HpyAV CCTTC 5 cut(s) 418, 615, 717, 866, 1048
HpyCH4III ACNGT 1 cut(s) 992
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 7 cut(s) 44, 72, 104, 461, 632, 725, 902
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 69, 75, 272, 653
HpyF3I CTNAG 4 cut(s) 267, 276, 945, 972
HpySE526I ACGT 1 cut(s) 100
Hsp92II CATG 3 cut(s) 461, 554, 673
KpnI GGTACC 1 cut(s) 220
KspAI GTTAAC 1 cut(s) 1015
Kzo9I GATC 2 cut(s) 383, 692
LmnI GCTCC 4 cut(s) 353, 792, 1041, 1057
Lsp1109I GCAGC 6 cut(s) 17, 53, 56, 75, 116, 737
LweI GCATC 1 cut(s) 127
MaeI CTAG 2 cut(s) 365, 452
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 2 cut(s) 940, 959
MalI GATC 2 cut(s) 385, 694
MboI GATC 2 cut(s) 383, 692
MboII GAAGA 5 cut(s) 202, 566, 611, 943, 973
MfeI CAATTG 1 cut(s) 1022
MflI RGATCY 2 cut(s) 383, 692
MhlI GDGCHC 4 cut(s) 315, 364, 789, 997
MlsI TGGCCA 1 cut(s) 78
MluCI AATT 5 cut(s) 416, 626, 840, 912, 1022
MluNI TGGCCA 1 cut(s) 78
MlyI GAGTC 1 cut(s) 421
MmeI TCCRAC 2 cut(s) 572, 1025
MnlI CCTC 4 cut(s) 611, 776, 902, 920
Mox20I TGGCCA 1 cut(s) 78
MroXI GAANNNNTTC 1 cut(s) 916
MscI TGGCCA 1 cut(s) 78
MseI TTAA 6 cut(s) 399, 798, 813, 843, 854, 1014
Msp20I TGGCCA 1 cut(s) 78
MspA1I CMGCKG 1 cut(s) 66
MspI CCGG 1 cut(s) 141
MspR9I CCNGG 3 cut(s) 179, 309, 712
MunI CAATTG 1 cut(s) 1022
MvaI CCWGG 3 cut(s) 179, 309, 712
MwoI GCNNNNNNNGC 5 cut(s) 41, 69, 75, 272, 653
NdeI CATATG 1 cut(s) 196
NdeII GATC 2 cut(s) 383, 692
NlaIII CATG 3 cut(s) 461, 554, 673
NlaIV GGNNCC 3 cut(s) 218, 648, 694
NmuCI GTSAC 2 cut(s) 940, 959
PagI TCATGA 1 cut(s) 669
PceI AGGCCT 1 cut(s) 48
PdmI GAANNNNTTC 1 cut(s) 916
PfeI GAWTC 1 cut(s) 125
PflMI CCANNNNNTGG 1 cut(s) 1035
PfoI TCCNGGA 1 cut(s) 710
PkrI GCNGC 6 cut(s) 7, 65, 68, 71, 106, 727
PleI GAGTC 1 cut(s) 420
PpsI GAGTC 1 cut(s) 420
PshBI ATTAAT 1 cut(s) 843
Psp124BI GAGCTC 1 cut(s) 789
Psp6I CCWGG 3 cut(s) 177, 307, 710
PspGI CCWGG 3 cut(s) 177, 307, 710
PspN4I GGNNCC 3 cut(s) 218, 648, 694
PspPI GGNCC 2 cut(s) 394, 704
PstNI CAGNNNCTG 1 cut(s) 69
PsuI RGATCY 2 cut(s) 383, 692
PvuII CAGCTG 1 cut(s) 66
RsaI GTAC 3 cut(s) 218, 247, 753
RsaNI GTAC 3 cut(s) 217, 246, 752
SacI GAGCTC 1 cut(s) 789
SaqAI TTAA 6 cut(s) 399, 798, 813, 843, 854, 1014
SatI GCNGC 6 cut(s) 6, 64, 67, 70, 105, 726
Sau3AI GATC 2 cut(s) 383, 692
Sau96I GGNCC 2 cut(s) 394, 704
ScaI AGTACT 1 cut(s) 753
SchI GAGTC 1 cut(s) 421
ScrFI CCNGG 3 cut(s) 179, 309, 712
SduI GDGCHC 4 cut(s) 315, 364, 789, 997
SfaNI GCATC 1 cut(s) 127
SinI GGWCC 1 cut(s) 394
SmiI ATTTAAAT 1 cut(s) 799
Sse9I AATT 5 cut(s) 416, 626, 840, 912, 1022
SseBI AGGCCT 1 cut(s) 48
SsiI CCGC 1 cut(s) 699
SspMI CTAG 2 cut(s) 365, 452
SstI GAGCTC 1 cut(s) 789
StuI AGGCCT 1 cut(s) 48
StyD4I CCNGG 3 cut(s) 177, 307, 710
StyI CCWWGG 1 cut(s) 790
SwaI ATTTAAAT 1 cut(s) 799
TaaI ACNGT 1 cut(s) 992
TaiI ACGT 1 cut(s) 103
TasI AATT 5 cut(s) 416, 626, 840, 912, 1022
TatI WGTACW 1 cut(s) 751
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 6 cut(s) 399, 798, 813, 843, 854, 1014
Tru9I TTAA 6 cut(s) 399, 798, 813, 843, 854, 1014
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 2 cut(s) 940, 959
TseI GCWGC 6 cut(s) 5, 63, 66, 69, 104, 725
Tsp45I GTSAC 2 cut(s) 940, 959
TspDTI ATGAA 2 cut(s) 250, 567
TspRI CASTG 1 cut(s) 175
Van91I CCANNNNNTGG 1 cut(s) 1035
VpaK11BI GGWCC 1 cut(s) 394
VspI ATTAAT 1 cut(s) 843
XapI RAATTY 2 cut(s) 626, 912
XmiI GTMKAC 1 cut(s) 492
XmnI GAANNNNTTC 1 cut(s) 916
XspI CTAG 2 cut(s) 365, 452
ZrmI AGTACT 1 cut(s) 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.