Rmu_sc0017091.1_g000001

GDSL esterase lipase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017091.1
OG0000193
Physical Location & Seq
Reverse (-)
2545 .. 3219
675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017091.1_g000001.1.cds

Sequence Viewer

Length: 543 bp
atgaatcatcatacacatattgggggagttgctcttacttcatatgctttttgtcaggaagtatacaataaaggaggacggaaattcggctttacaaaattgccacctctgggtcttgtgccatcccagagaccaggaaacaaaggcacctgtgttaaagaagttacatcgctagcaaacatacacaatgcagtacttcctaaacaccttgaaaagctgaagagcaagctgcaaggattcaaatattcaattgcaaaattagacacttacctaactgaaagaatcaataaaccatctaaatatggtttcaaggaaggaaagagtgcatgctgtggctctggtccatatggaggaatttatagctgtggagggaagagaggtgtgaccaagtatcagttatgtgccaatgttagtgagtatgtctttttcgactctttccatccaacagaaagggtttaccagcaactttccaatctgtggtggaaccaagtacctaataccaaagagccttacagtaatctgaaagagctatttgaagtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

180

Amino Acids

20.18

Weight (kDa)

9.45

Isoelectric Point (pI)

37.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 146
AccB7I CCANNNNNTGG 1 cut(s) 477
AccI GTMKAC 1 cut(s) 63
AcsI RAATTY 2 cut(s) 83, 354
AcuI CTGAAG 1 cut(s) 239
AfaI GTAC 2 cut(s) 195, 492
AfiI CCNNNNNNNGG 3 cut(s) 110, 350, 477
AgsI TTSAA 5 cut(s) 212, 241, 249, 310, 536
AjnI CCWGG 1 cut(s) 133
AluBI AGCT 4 cut(s) 217, 229, 363, 529
AluI AGCT 4 cut(s) 217, 229, 363, 529
Alw26I GTCTC 1 cut(s) 124
ApeKI GCWGC 1 cut(s) 229
ApoI RAATTY 2 cut(s) 83, 354
AspS9I GGNCC 1 cut(s) 341
AsuNHI GCTAGC 1 cut(s) 172
AvaII GGWCC 1 cut(s) 341
BanI GGYRCC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 216
BccI CCATC 3 cut(s) 130, 301, 447
BciT130I CCWGG 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 124
BfaI CTAG 1 cut(s) 173
BisI GCNGC 1 cut(s) 230
BlsI GCNGC 1 cut(s) 231
BmcAI AGTACT 1 cut(s) 195
Bme1390I CCNGG 1 cut(s) 135
Bme18I GGWCC 1 cut(s) 341
BmgT120I GGNCC 1 cut(s) 341
BmiI GGNNCC 2 cut(s) 148, 485
BmrFI CCNGG 1 cut(s) 135
BmtI GCTAGC 1 cut(s) 176
BsaI GGTCTC 1 cut(s) 124
Bsc4I CCNNNNNNNGG 3 cut(s) 110, 350, 477
BseBI CCWGG 1 cut(s) 135
BseGI GGATG 2 cut(s) 122, 439
BseLI CCNNNNNNNGG 3 cut(s) 110, 350, 477
BseXI GCAGC 1 cut(s) 216
BshNI GGYRCC 1 cut(s) 146
BslI CCNNNNNNNGG 3 cut(s) 110, 350, 477
BsmAI GTCTC 1 cut(s) 124
Bso31I GGTCTC 1 cut(s) 124
BspLI GGNNCC 2 cut(s) 148, 485
BspOI GCTAGC 1 cut(s) 176
BspQI GCTCTTC 1 cut(s) 215
BspT107I GGYRCC 1 cut(s) 146
BspTNI GGTCTC 1 cut(s) 124
BssNAI GTATAC 1 cut(s) 64
Bst1107I GTATAC 1 cut(s) 64
Bst2UI CCWGG 1 cut(s) 135
Bst4CI ACNGT 1 cut(s) 515
Bst6I CTCTTC 2 cut(s) 215, 368
BstC8I GCNNGC 3 cut(s) 174, 227, 328
BstF5I GGATG 2 cut(s) 122, 439
BstMAI GTCTC 1 cut(s) 124
BstNI CCWGG 1 cut(s) 135
BstNSI RCATGY 1 cut(s) 330
BstSCI CCNGG 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 216
BstZ17I GTATAC 1 cut(s) 64
BtgZI GCGATG 1 cut(s) 153
BtsCI GGATG 2 cut(s) 122, 439
Cac8I GCNNGC 3 cut(s) 174, 227, 328
Cfr13I GGNCC 1 cut(s) 341
Csp6I GTAC 2 cut(s) 194, 491
CviAII CATG 1 cut(s) 327
CviJI RGCY 7 cut(s) 90, 217, 229, 336, 363, 508, 529
CviKI_1 RGCY 7 cut(s) 90, 217, 229, 336, 363, 508, 529
CviQI GTAC 2 cut(s) 194, 491
Eam1104I CTCTTC 2 cut(s) 215, 368
EarI CTCTTC 2 cut(s) 215, 368
Eco31I GGTCTC 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 341
Eco57I CTGAAG 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 133
FaeI CATG 1 cut(s) 330
FatI CATG 1 cut(s) 326
FauNDI CATATG 2 cut(s) 43, 346
FblI GTMKAC 1 cut(s) 63
Fnu4HI GCNGC 1 cut(s) 230
FokI GGATG 2 cut(s) 109, 426
Fsp4HI GCNGC 1 cut(s) 230
FspBI CTAG 1 cut(s) 173
GluI GCNGC 1 cut(s) 230
Hin1II CATG 1 cut(s) 330
HinfI GANTC 4 cut(s) 4, 237, 282, 431
Hpy166II GTNNAC 2 cut(s) 64, 457
Hpy188I TCNGA 1 cut(s) 522
Hpy188III TCNNGA 1 cut(s) 56
Hpy8I GTNNAC 2 cut(s) 64, 457
HpyAV CCTTC 1 cut(s) 308
HpyCH4III ACNGT 1 cut(s) 515
HpyCH4V TGCA 4 cut(s) 191, 232, 254, 326
Hsp92II CATG 1 cut(s) 330
LguI GCTCTTC 1 cut(s) 215
LpnPI CCDG 8 cut(s) 41, 95, 120, 140, 147, 163, 324, 473
Lsp1109I GCAGC 1 cut(s) 216
MaeI CTAG 1 cut(s) 173
MaeIII GTNAC 2 cut(s) 163, 382
MboII GAAGA 2 cut(s) 232, 385
MfeI CAATTG 1 cut(s) 249
MluCI AATT 5 cut(s) 83, 98, 249, 257, 354
MlyI GAGTC 1 cut(s) 425
MmeI TCCRAC 1 cut(s) 467
MnlI CCTC 5 cut(s) 68, 117, 344, 362, 371
MseI TTAA 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 135
MunI CAATTG 1 cut(s) 249
MvaI CCWGG 1 cut(s) 135
NdeI CATATG 2 cut(s) 43, 346
NheI GCTAGC 1 cut(s) 172
NlaIII CATG 1 cut(s) 330
NlaIV GGNNCC 2 cut(s) 148, 485
NmuCI GTSAC 1 cut(s) 382
NspI RCATGY 1 cut(s) 330
PaeI GCATGC 1 cut(s) 330
PciSI GCTCTTC 1 cut(s) 215
PfeI GAWTC 3 cut(s) 4, 237, 282
PflMI CCANNNNNTGG 1 cut(s) 477
PkrI GCNGC 1 cut(s) 231
PleI GAGTC 1 cut(s) 425
PpsI GAGTC 1 cut(s) 425
Psp6I CCWGG 1 cut(s) 133
PspGI CCWGG 1 cut(s) 133
PspN4I GGNNCC 2 cut(s) 148, 485
PspPI GGNCC 1 cut(s) 341
RsaI GTAC 2 cut(s) 195, 492
RsaNI GTAC 2 cut(s) 194, 491
SapI GCTCTTC 1 cut(s) 215
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 1 cut(s) 230
Sau96I GGNCC 1 cut(s) 341
ScaI AGTACT 1 cut(s) 195
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 1 cut(s) 135
SinI GGWCC 1 cut(s) 341
SphI GCATGC 1 cut(s) 330
Sse9I AATT 5 cut(s) 83, 98, 249, 257, 354
SspI AATATT 1 cut(s) 245
SspMI CTAG 1 cut(s) 173
StyD4I CCNGG 1 cut(s) 133
TaaI ACNGT 1 cut(s) 515
TaqI TCGA 1 cut(s) 429
TasI AATT 5 cut(s) 83, 98, 249, 257, 354
TatI WGTACW 1 cut(s) 193
TfiI GAWTC 3 cut(s) 4, 237, 282
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TseFI GTSAC 1 cut(s) 382
TseI GCWGC 1 cut(s) 229
Tsp45I GTSAC 1 cut(s) 382
TspDTI ATGAA 2 cut(s) 17, 30
TspGWI ACGGA 1 cut(s) 94
Van91I CCANNNNNTGG 1 cut(s) 477
VpaK11BI GGWCC 1 cut(s) 341
XapI RAATTY 2 cut(s) 83, 354
XceI RCATGY 1 cut(s) 330
XmiI GTMKAC 1 cut(s) 63
XspI CTAG 1 cut(s) 173
ZrmI AGTACT 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.