Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000193

Physical Location & Seq

Genomic Coordinates Forward (+)

63290312 .. 63291415

Gene Structure 1104 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020293

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCTGTGATAGACCTTAATTCGCAACTTTCAAATTTTGAGCGAGTTCATGAGTCATTGAGGAAGAATTTAGGGGATGAAGAAGCGAACACTTTGATATCAAGAGCTGTTTACTTGTTTAGTGTCGGAGGCAACGATTACTCATACATATTCGGGACAAACTCCAGCATCCAGCATCCTCACAGGGAATTTGTAGGAACTGTTCTAGGCAACATAACTGCAGCAATCAAAAAAATATATAACAAAGGAGGAAGAAATTTTGGGTTTCTTAGCCTTGATCCCCTTGGTTGTATACCATACTCAAGAGCACTTGAGAAGGAACAAAAAGACGGATGCTTTGAGGAGATTACACCGTATGTAGAATTCCACAATGAAGAACTTCCCAAACTCCTTCAAAAGCTGGAGACTGAACTTGGGGGATTTAGATACTCGCTTTCCAACTATAATGAGTTTCTGAGTGATAAGATAAATAACCCTTCTAAATATGGTTTTAAAGAGGGGAAGGTGGCATGTTGTGGAAGTGGTCCGTATAGAGGAACTTTCAGCTGCGGAGGCCAGAGAGGTACCAAAGAGTATGATTTATGCCCGAATGCAAGTGAATACGTCTTCTTTGACTCTGGTCATCCAACAGAAAGGGTCAATCAACAATTTGCTACGATATTTTGGAGTGGAACTCCCAATTTCACTGCTCCTTACAATCTCAAAGCACTATTCGAAAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0006629 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009817 GO:0009861 GO:0009866 GO:0009871 GO:0009873 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0010928 GO:0010930 GO:0014070 GO:0016298 GO:0016787 GO:0016788 GO:0023051 GO:0023052 GO:0023057 GO:0031347 GO:0031349 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044238 GO:0044421 GO:0045087 GO:0045088 GO:0045089 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080134 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

242

Amino Acids

27.13

Weight (kDa)

6.0

Isoelectric Point (pI)

27.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	21 - 218	8e-15	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca	FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica	MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica	Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis	pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis	RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata	RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora	Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa	Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha	Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana	Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	563
AccB1I	GGYRCC	1 cut(s)	563
AccI	GTMKAC	1 cut(s)	292
AciI	CCGC	1 cut(s)	549
AclWI	GGATC	1 cut(s)	272
AcsI	RAATTY	5 cut(s)	34, 67, 188, 256, 362
AfaI	GTAC	1 cut(s)	565
AfiI	CCNNNNNNNGG	1 cut(s)	533
AgsI	TTSAA	2 cut(s)	33, 395
AluBI	AGCT	3 cut(s)	107, 400, 546
AluI	AGCT	3 cut(s)	107, 400, 546
Alw21I	GWGCWC	1 cut(s)	310
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	1 cut(s)	272
AoxI	GGCC	1 cut(s)	553
ApeKI	GCWGC	2 cut(s)	221, 546
ApoI	RAATTY	5 cut(s)	34, 67, 188, 256, 362
ArsI	GACNNNNNNTTYG	2 cut(s)	320, 352
Asp700I	GAANNNNTTC	1 cut(s)	378
Asp718I	GGTACC	1 cut(s)	563
AspS9I	GGNCC	1 cut(s)	524
AsuII	TTCGAA	1 cut(s)	714
AvaII	GGWCC	1 cut(s)	524
BanI	GGYRCC	1 cut(s)	563
BbsI	GAAGAC	1 cut(s)	598
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	2 cut(s)	233, 533
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	1 cut(s)	206
BfmI	CTRYAG	1 cut(s)	219
BisI	GCNGC	2 cut(s)	222, 547
BlsI	GCNGC	2 cut(s)	223, 548
Bme18I	GGWCC	1 cut(s)	524
BmgT120I	GGNCC	1 cut(s)	524
BmiI	GGNNCC	1 cut(s)	565
BmsI	GCATC	3 cut(s)	177, 184, 323
BoxI	GACNNNNGTC	1 cut(s)	618
BpiI	GAAGAC	1 cut(s)	598
BplI	GAGNNNNNCTC	2 cut(s)	658, 690
BpmI	CTGGAG	2 cut(s)	148, 422
Bpu14I	TTCGAA	1 cut(s)	714
BpuEI	CTTGAG	2 cut(s)	286, 332
BsaJI	CCNNGG	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	1 cut(s)	533
BseDI	CCNNGG	1 cut(s)	283
BseGI	GGATG	5 cut(s)	82, 168, 175, 338, 622
BseLI	CCNNNNNNNGG	1 cut(s)	533
BseMII	CTCAG	1 cut(s)	446
BseRI	GAGGAG	1 cut(s)	356
BseXI	GCAGC	2 cut(s)	233, 533
BshFI	GGCC	1 cut(s)	555
BshNI	GGYRCC	1 cut(s)	563
BsiHKAI	GWGCWC	1 cut(s)	310
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	1 cut(s)	533
BsmAI	GTCTC	1 cut(s)	398
BsmFI	GGGAC	1 cut(s)	169
BsmI	GAATGC	1 cut(s)	595
BsnI	GGCC	1 cut(s)	555
Bsp119I	TTCGAA	1 cut(s)	714
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp143I	GATC	1 cut(s)	277
BspACI	CCGC	1 cut(s)	549
BspANI	GGCC	1 cut(s)	555
BspCNI	CTCAG	1 cut(s)	447
BspHI	TCATGA	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	565
BspMAI	CTGCAG	1 cut(s)	223
BspPI	GGATC	1 cut(s)	272
BspT104I	TTCGAA	1 cut(s)	714
BspT107I	GGYRCC	1 cut(s)	563
BssECI	CCNNGG	1 cut(s)	283
BssMI	GATC	1 cut(s)	277
BssNAI	GTATAC	1 cut(s)	293
BssT1I	CCWWGG	1 cut(s)	283
Bst1107I	GTATAC	1 cut(s)	293
Bst4CI	ACNGT	2 cut(s)	202, 354
BstBI	TTCGAA	1 cut(s)	714
BstDEI	CTNAG	2 cut(s)	269, 455
BstF5I	GGATG	5 cut(s)	82, 168, 175, 338, 622
BstKTI	GATC	1 cut(s)	280
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	1 cut(s)	277
BstMWI	GCNNNNNNNGC	1 cut(s)	552
BstNSI	RCATGY	1 cut(s)	513
BstPAI	GACNNNNGTC	1 cut(s)	618
BstSFI	CTRYAG	1 cut(s)	219
BstV1I	GCAGC	2 cut(s)	233, 533
BstV2I	GAAGAC	1 cut(s)	598
BstZ17I	GTATAC	1 cut(s)	293
BsuRI	GGCC	1 cut(s)	555
BtsCI	GGATG	5 cut(s)	82, 168, 175, 338, 622
BtsI	GCAGTG	1 cut(s)	684
BtsIMutI	CAGTG	1 cut(s)	684
CciI	TCATGA	1 cut(s)	49
Cfr13I	GGNCC	1 cut(s)	524
Csp6I	GTAC	1 cut(s)	564
CviAII	CATG	2 cut(s)	50, 510
CviJI	RGCY	6 cut(s)	5, 107, 273, 400, 546, 555
CviKI_1	RGCY	6 cut(s)	5, 107, 273, 400, 546, 555
CviQI	GTAC	1 cut(s)	564
DdeI	CTNAG	2 cut(s)	269, 455
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
DraI	TTTAAA	1 cut(s)	493
Eco130I	CCWWGG	1 cut(s)	283
Eco32I	GATATC	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	524
EcoRI	GAATTC	1 cut(s)	362
EcoRV	GATATC	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	283
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	2 cut(s)	53, 513
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	2 cut(s)	49, 509
FblI	GTMKAC	1 cut(s)	292
Fnu4HI	GCNGC	2 cut(s)	222, 547
FokI	GGATG	5 cut(s)	89, 155, 162, 345, 609
Fsp4HI	GCNGC	2 cut(s)	222, 547
FspBI	CTAG	1 cut(s)	206
GluI	GCNGC	2 cut(s)	222, 547
GsuI	CTGGAG	2 cut(s)	148, 422
HaeIII	GGCC	1 cut(s)	555
Hin1II	CATG	2 cut(s)	53, 513
HinfI	GANTC	2 cut(s)	53, 614
Hpy166II	GTNNAC	2 cut(s)	112, 293
Hpy188I	TCNGA	2 cut(s)	128, 456
Hpy188III	TCNNGA	4 cut(s)	50, 102, 154, 303
Hpy8I	GTNNAC	2 cut(s)	112, 293
HpyAV	CCTTC	4 cut(s)	310, 401, 486, 496
HpyCH4III	ACNGT	2 cut(s)	202, 354
HpyCH4IV	ACGT	1 cut(s)	603
HpyCH4V	TGCA	2 cut(s)	221, 593
HpyF10VI	GCNNNNNNNGC	1 cut(s)	552
HpyF3I	CTNAG	2 cut(s)	269, 455
HpySE526I	ACGT	1 cut(s)	603
Hsp92II	CATG	2 cut(s)	53, 513
KpnI	GGTACC	1 cut(s)	567
Kzo9I	GATC	1 cut(s)	277
LmnI	GCTCC	1 cut(s)	694
LpnPI	CCDG	6 cut(s)	169, 178, 185, 386, 569, 603
Lsp1109I	GCAGC	2 cut(s)	233, 533
LweI	GCATC	3 cut(s)	177, 184, 323
MaeI	CTAG	1 cut(s)	206
MaeII	ACGT	1 cut(s)	603
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	5 cut(s)	76, 92, 264, 386, 598
MhlI	GDGCHC	1 cut(s)	310
MluCI	AATT	9 cut(s)	19, 34, 67, 188, 256, 362, 647, 679, 721
MlyI	GAGTC	2 cut(s)	62, 608
MmeI	TCCRAC	3 cut(s)	106, 462, 650
MnlI	CCTC	9 cut(s)	54, 122, 189, 242, 334, 490, 527, 545, 554
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	3 cut(s)	18, 492, 724
MspA1I	CMGCKG	1 cut(s)	546
Mva1269I	GAATGC	1 cut(s)	595
MwoI	GCNNNNNNNGC	1 cut(s)	552
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	2 cut(s)	53, 513
NlaIV	GGNNCC	1 cut(s)	565
NspI	RCATGY	1 cut(s)	513
NspV	TTCGAA	1 cut(s)	714
PagI	TCATGA	1 cut(s)	49
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PctI	GAATGC	1 cut(s)	595
PdmI	GAANNNNTTC	1 cut(s)	378
PkrI	GCNGC	2 cut(s)	223, 548
PleI	GAGTC	2 cut(s)	61, 608
PpsI	GAGTC	2 cut(s)	61, 608
PshAI	GACNNNNGTC	1 cut(s)	618
PspN4I	GGNNCC	1 cut(s)	565
PspPI	GGNCC	1 cut(s)	524
PsrI	GAACNNNNNNTAC	2 cut(s)	186, 218
PstI	CTGCAG	1 cut(s)	223
PvuII	CAGCTG	1 cut(s)	546
RsaI	GTAC	1 cut(s)	565
RsaNI	GTAC	1 cut(s)	564
SaqAI	TTAA	3 cut(s)	18, 492, 724
SatI	GCNGC	2 cut(s)	222, 547
Sau3AI	GATC	1 cut(s)	277
Sau96I	GGNCC	1 cut(s)	524
SchI	GAGTC	2 cut(s)	62, 608
SduI	GDGCHC	1 cut(s)	310
SetI	ASST	7 cut(s)	18, 109, 402, 507, 548, 565, 606
SfaNI	GCATC	3 cut(s)	177, 184, 323
SfcI	CTRYAG	1 cut(s)	219
SfuI	TTCGAA	1 cut(s)	714
SinI	GGWCC	1 cut(s)	524
SmlI	CTYRAG	2 cut(s)	301, 311
SmoI	CTYRAG	2 cut(s)	301, 311
Sse9I	AATT	9 cut(s)	19, 34, 67, 188, 256, 362, 647, 679, 721
SsiI	CCGC	1 cut(s)	549
SspMI	CTAG	1 cut(s)	206
StyI	CCWWGG	1 cut(s)	283
TaaI	ACNGT	2 cut(s)	202, 354
TaiI	ACGT	1 cut(s)	606
TaqI	TCGA	1 cut(s)	714
TasI	AATT	9 cut(s)	19, 34, 67, 188, 256, 362, 647, 679, 721
Tru1I	TTAA	3 cut(s)	18, 492, 724
Tru9I	TTAA	3 cut(s)	18, 492, 724
TscAI	CASTG	1 cut(s)	691
TseI	GCWGC	2 cut(s)	221, 546
TspDTI	ATGAA	3 cut(s)	38, 93, 387
TspGWI	ACGGA	2 cut(s)	345, 516
TspRI	CASTG	1 cut(s)	691
VpaK11BI	GGWCC	1 cut(s)	524
XapI	RAATTY	5 cut(s)	34, 67, 188, 256, 362
XceI	RCATGY	1 cut(s)	513
XmiI	GTMKAC	1 cut(s)	292
XmnI	GAANNNNTTC	1 cut(s)	378
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.