Rorug02G0400100

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000193
Physical Location & Seq
Forward (+)
51086243 .. 51088911
2669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0400100.1

Sequence Viewer

Length: 951 bp
ATGCTTTCAGCAAAGTCAGAGTCCGATATGACTAGCTTAGCTCCATCATCACCATCAAGGTCCCCAAAGGTTCCTGTGTACTATGTTCAAAGCCCTTCAAGGGATTCACAAGTCTCACATGATGGAGACAAGTCCTCCTCAATGCAGGCCACTCCAATTTACAATAATAGCCCTATGGAGTCACCCTCCCACCCCTCCTTCGGCCGGCACTCAAGGAACTCCTCCGCGAGCCGGTTCTCGGGGATGTTCAGGTCCTCCTCAGGGAGGAAAGGCAGCCGGAAGCAGCAAAGGAACAACGACAAGGGGTGGCCGGAGTGTAAAGTGATTATGGAAGAAGGGGATTATGATGATCTTGATAAGGCTTTGTCGAGGCGTATGCAGATCTTGATTGCTCTCTTTGGCTTTGTGGTGTTGTTTACTATCTTCTGCTTAATCATTTGGGGAGCAAGCAAGCCTTTCAAAGCTGAGGTTTTAGTCAAGAGCTTGACAGTTAGCAATGTCTATGTTGGCGAGGGTTCAGACTTTTCAGGGGTTCCAACAAAGATGCTGACAGTGAATGGCTCACTAAGATTCACTGTACACAACCCTGCTTCAATTTTTGGCATTCATGTTAGCTCCACACCCATCAATCTTCTCTATTCAGACATTTCTGTTGCAACTGGTCAGTTAAAGAAATACTACCAGCCAAGAAAGAGCTCCCGAACAGTATCAGTGATCTTTGAAGGAACCAAGGTTCCTCTGTATGGGGCTGGATCAAGTTTGAAATACTCTTCGACTGGTGCTTTGGCTCCAATTCCATTAACTCTAAATTTTGAAATCAAGTCTCGAGGCTACGTTGTTGGACATCTAGTGAAAACCAAGCACATAAGGGCAATCTCATGTCCTTTGGTTATAGATCCCGCTGTCACCAAAGCCCTCAAGTTGAAACAGAGTTCATGCACTTACGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

316

Amino Acids

34.54

Weight (kDa)

9.75

Isoelectric Point (pI)

54.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 227
AciI CCGC 2 cut(s) 225, 900
AclWI GGATC 2 cut(s) 760, 890
AcoI YGGCCR 2 cut(s) 202, 308
AcsI RAATTY 1 cut(s) 808
AfaI GTAC 2 cut(s) 80, 579
AfiI CCNNNNNNNGG 8 cut(s) 100, 200, 204, 231, 238, 261, 264, 743
AgsI TTSAA 8 cut(s) 89, 99, 460, 594, 722, 763, 815, 925
AloI GAACNNNNNNTCC 4 cut(s) 717, 718, 749, 750
AluBI AGCT 6 cut(s) 36, 41, 464, 483, 615, 696
AluI AGCT 6 cut(s) 36, 41, 464, 483, 615, 696
Alw21I GWGCWC 1 cut(s) 698
Alw26I GTCTC 3 cut(s) 118, 120, 828
AlwI GGATC 2 cut(s) 760, 890
Ama87I CYCGRG 2 cut(s) 238, 825
AoxI GGCC 3 cut(s) 147, 202, 308
ApeKI GCWGC 2 cut(s) 273, 283
ApoI RAATTY 1 cut(s) 808
ArsI GACNNNNNNTTYG 3 cut(s) 37, 766, 798
AspS9I GGNCC 2 cut(s) 60, 252
AsuHPI GGTGA 3 cut(s) 42, 174, 898
AvaI CYCGRG 2 cut(s) 238, 825
AvaII GGWCC 2 cut(s) 60, 252
AxyI CCTNAGG 1 cut(s) 259
BanII GRGCYC 1 cut(s) 698
Bbv12I GWGCWC 1 cut(s) 698
BbvCI CCTCAGC 1 cut(s) 465
BbvI GCAGC 2 cut(s) 285, 295
BccI CCATC 4 cut(s) 52, 61, 116, 632
BcgI CGANNNNNNTGC 2 cut(s) 358, 392
BcoDI GTCTC 3 cut(s) 118, 120, 828
BfaI CTAG 2 cut(s) 33, 848
BglII AGATCT 1 cut(s) 381
BisI GCNGC 2 cut(s) 274, 284
BlpI GCTNAGC 1 cut(s) 37
BlsI GCNGC 2 cut(s) 275, 285
Bme18I GGWCC 2 cut(s) 60, 252
BmeT110I CYCGRG 2 cut(s) 238, 825
BmgT120I GGNCC 2 cut(s) 60, 252
BmiI GGNNCC 6 cut(s) 62, 72, 534, 727, 735, 789
BmsI GCATC 1 cut(s) 534
BplI GAGNNNNNCTC 2 cut(s) 170, 202
Bpu10I CCTNAGC 1 cut(s) 465
Bpu1102I GCTNAGC 1 cut(s) 37
BpuEI CTTGAG 2 cut(s) 196, 902
BsaJI CCNNGG 1 cut(s) 729
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 8 cut(s) 100, 200, 204, 231, 238, 261, 264, 743
Bse118I RCCGGY 2 cut(s) 204, 231
Bse1I ACTGG 2 cut(s) 664, 781
Bse21I CCTNAGG 1 cut(s) 259
Bse3DI GCAATG 1 cut(s) 502
BseDI CCNNGG 1 cut(s) 729
BseGI GGATG 1 cut(s) 249
BseLI CCNNNNNNNGG 8 cut(s) 100, 200, 204, 231, 238, 261, 264, 743
BseMI GCAATG 1 cut(s) 502
BseMII CTCAG 2 cut(s) 273, 456
BseNI ACTGG 2 cut(s) 664, 781
BseRI GAGGAG 3 cut(s) 127, 211, 247
BseX3I CGGCCG 1 cut(s) 202
BseXI GCAGC 2 cut(s) 285, 295
Bsh1236I CGCG 1 cut(s) 227
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 3 cut(s) 149, 204, 310
BsiEI CGRYCG 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 698
BsiHKCI CYCGRG 2 cut(s) 238, 825
BsiSI CCGG 4 cut(s) 205, 232, 277, 311
BslFI GGGAC 1 cut(s) 46
BslI CCNNNNNNNGG 8 cut(s) 100, 200, 204, 231, 238, 261, 264, 743
BsmAI GTCTC 3 cut(s) 118, 120, 828
BsmFI GGGAC 1 cut(s) 46
BsmI GAATGC 1 cut(s) 603
BsnI GGCC 3 cut(s) 149, 204, 310
BsoBI CYCGRG 2 cut(s) 238, 825
Bsp1286I GDGCHC 1 cut(s) 698
Bsp1407I TGTACA 1 cut(s) 577
Bsp143I GATC 5 cut(s) 349, 381, 714, 752, 895
Bsp1720I GCTNAGC 1 cut(s) 37
BspACI CCGC 2 cut(s) 225, 900
BspANI GGCC 3 cut(s) 149, 204, 310
BspCNI CTCAG 2 cut(s) 272, 457
BspFNI CGCG 1 cut(s) 227
BspLI GGNNCC 6 cut(s) 62, 72, 534, 727, 735, 789
BspPI GGATC 2 cut(s) 760, 890
BsrDI GCAATG 1 cut(s) 502
BsrFI RCCGGY 2 cut(s) 204, 231
BsrGI TGTACA 1 cut(s) 577
BsrI ACTGG 2 cut(s) 664, 781
BssAI RCCGGY 2 cut(s) 204, 231
BssECI CCNNGG 1 cut(s) 729
BssMI GATC 5 cut(s) 349, 381, 714, 752, 895
BssT1I CCWWGG 1 cut(s) 729
Bst4CI ACNGT 4 cut(s) 490, 553, 577, 706
Bst6I CTCTTC 1 cut(s) 775
BstAUI TGTACA 1 cut(s) 577
BstC8I GCNNGC 5 cut(s) 147, 206, 229, 448, 452
BstDEI CTNAG 4 cut(s) 37, 259, 465, 566
BstENI CCTNNNNNAGG 1 cut(s) 262
BstF5I GGATG 1 cut(s) 249
BstFNI CGCG 1 cut(s) 227
BstKTI GATC 5 cut(s) 352, 384, 717, 755, 898
BstMAI GTCTC 3 cut(s) 118, 120, 828
BstMBI GATC 5 cut(s) 349, 381, 714, 752, 895
BstMCI CGRYCG 1 cut(s) 205
BstUI CGCG 1 cut(s) 227
BstV1I GCAGC 2 cut(s) 285, 295
BstX2I RGATCY 2 cut(s) 381, 895
BstYI RGATCY 2 cut(s) 381, 895
BstZI CGGCCG 1 cut(s) 202
Bsu36I CCTNAGG 1 cut(s) 259
BsuRI GGCC 3 cut(s) 149, 204, 310
BtsCI GGATG 1 cut(s) 249
BtsIMutI CAGTG 3 cut(s) 558, 573, 717
Cac8I GCNNGC 5 cut(s) 147, 206, 229, 448, 452
Cfr10I RCCGGY 2 cut(s) 204, 231
Cfr13I GGNCC 2 cut(s) 60, 252
Csp6I GTAC 2 cut(s) 79, 578
CviAII CATG 4 cut(s) 119, 608, 879, 936
CviQI GTAC 2 cut(s) 79, 578
DdeI CTNAG 4 cut(s) 37, 259, 465, 566
DpnI GATC 5 cut(s) 351, 383, 716, 754, 897
DpnII GATC 5 cut(s) 349, 381, 714, 752, 895
EaeI YGGCCR 2 cut(s) 202, 308
EagI CGGCCG 1 cut(s) 202
Eam1104I CTCTTC 1 cut(s) 775
EarI CTCTTC 1 cut(s) 775
Ecl136II GAGCTC 1 cut(s) 696
EclXI CGGCCG 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 729
Eco24I GRGCYC 1 cut(s) 698
Eco47I GGWCC 2 cut(s) 60, 252
Eco52I CGGCCG 1 cut(s) 202
Eco53kI GAGCTC 1 cut(s) 696
Eco81I CCTNAGG 1 cut(s) 259
Eco88I CYCGRG 2 cut(s) 238, 825
EcoICRI GAGCTC 1 cut(s) 696
EcoNI CCTNNNNNAGG 1 cut(s) 262
EcoO109I RGGNCCY 2 cut(s) 60, 252
EcoT14I CCWWGG 1 cut(s) 729
EcoT38I GRGCYC 1 cut(s) 698
ErhI CCWWGG 1 cut(s) 729
FaeI CATG 4 cut(s) 122, 611, 882, 939
FalI AAGNNNNNCTT 2 cut(s) 439, 471
FaqI GGGAC 1 cut(s) 46
FatI CATG 4 cut(s) 118, 607, 878, 935
FauI CCCGC 1 cut(s) 907
Fnu4HI GCNGC 2 cut(s) 274, 284
FokI GGATG 1 cut(s) 256
FriOI GRGCYC 1 cut(s) 698
Fsp4HI GCNGC 2 cut(s) 274, 284
FspBI CTAG 2 cut(s) 33, 848
GluI GCNGC 2 cut(s) 274, 284
HaeIII GGCC 3 cut(s) 149, 204, 310
HapII CCGG 4 cut(s) 205, 232, 277, 311
Hin1II CATG 4 cut(s) 122, 611, 882, 939
HinfI GANTC 4 cut(s) 20, 104, 179, 570
HpaII CCGG 4 cut(s) 205, 232, 277, 311
HphI GGTGA 3 cut(s) 42, 174, 898
Hpy166II GTNNAC 3 cut(s) 79, 417, 580
Hpy188I TCNGA 4 cut(s) 19, 25, 520, 643
Hpy188III TCNNGA 5 cut(s) 353, 385, 478, 699, 825
Hpy8I GTNNAC 3 cut(s) 79, 417, 580
HpyAV CCTTC 4 cut(s) 105, 208, 329, 716
HpyCH4III ACNGT 4 cut(s) 490, 553, 577, 706
HpyCH4IV ACGT 1 cut(s) 834
HpyCH4V TGCA 4 cut(s) 145, 379, 656, 939
HpyF3I CTNAG 4 cut(s) 37, 259, 465, 566
HpySE526I ACGT 1 cut(s) 834
Hsp92II CATG 4 cut(s) 122, 611, 882, 939
KroI GCCGGC 1 cut(s) 204
KroNI GCCGGC 1 cut(s) 206
Kzo9I GATC 5 cut(s) 349, 381, 714, 752, 895
LmnI GCTCC 5 cut(s) 46, 443, 620, 701, 793
Lsp1109I GCAGC 2 cut(s) 285, 295
LweI GCATC 1 cut(s) 534
MaeI CTAG 2 cut(s) 33, 848
MaeII ACGT 1 cut(s) 834
MaeIII GTNAC 2 cut(s) 180, 904
MalI GATC 5 cut(s) 351, 383, 716, 754, 897
MboI GATC 5 cut(s) 349, 381, 714, 752, 895
MboII GAAGA 4 cut(s) 344, 415, 623, 762
MflI RGATCY 2 cut(s) 381, 895
MhlI GDGCHC 1 cut(s) 698
MluCI AATT 4 cut(s) 156, 594, 792, 808
MlyI GAGTC 2 cut(s) 29, 188
MmeI TCCRAC 2 cut(s) 560, 820
MroNI GCCGGC 1 cut(s) 204
MseI TTAA 3 cut(s) 431, 668, 800
MspA1I CMGCKG 1 cut(s) 902
MspI CCGG 4 cut(s) 205, 232, 277, 311
Mva1269I GAATGC 1 cut(s) 603
MvnI CGCG 1 cut(s) 227
NaeI GCCGGC 1 cut(s) 206
NdeII GATC 5 cut(s) 349, 381, 714, 752, 895
NgoMIV GCCGGC 1 cut(s) 204
NlaIII CATG 4 cut(s) 122, 611, 882, 939
NlaIV GGNNCC 6 cut(s) 62, 72, 534, 727, 735, 789
NmuCI GTSAC 2 cut(s) 180, 904
PaeR7I CTCGAG 1 cut(s) 825
PctI GAATGC 1 cut(s) 603
PdiI GCCGGC 1 cut(s) 206
PfeI GAWTC 2 cut(s) 104, 570
PkrI GCNGC 2 cut(s) 275, 285
PleI GAGTC 2 cut(s) 28, 187
PpsI GAGTC 2 cut(s) 28, 187
PpuMI RGGWCCY 2 cut(s) 60, 252
Psp124BI GAGCTC 1 cut(s) 698
Psp5II RGGWCCY 2 cut(s) 60, 252
PspN4I GGNNCC 6 cut(s) 62, 72, 534, 727, 735, 789
PspPI GGNCC 2 cut(s) 60, 252
PspPPI RGGWCCY 2 cut(s) 60, 252
PsuI RGATCY 2 cut(s) 381, 895
RsaI GTAC 2 cut(s) 80, 579
RsaNI GTAC 2 cut(s) 79, 578
SacI GAGCTC 1 cut(s) 698
SaqAI TTAA 3 cut(s) 431, 668, 800
SatI GCNGC 2 cut(s) 274, 284
Sau3AI GATC 5 cut(s) 349, 381, 714, 752, 895
Sau96I GGNCC 2 cut(s) 60, 252
SchI GAGTC 2 cut(s) 29, 188
SduI GDGCHC 1 cut(s) 698
SfaNI GCATC 1 cut(s) 534
Sfr274I CTCGAG 1 cut(s) 825
SinI GGWCC 2 cut(s) 60, 252
SlaI CTCGAG 1 cut(s) 825
SmlI CTYRAG 3 cut(s) 211, 825, 917
SmoI CTYRAG 3 cut(s) 211, 825, 917
Sse9I AATT 4 cut(s) 156, 594, 792, 808
SsiI CCGC 2 cut(s) 225, 900
SspMI CTAG 2 cut(s) 33, 848
SstI GAGCTC 1 cut(s) 698
StyI CCWWGG 1 cut(s) 729
TaaI ACNGT 4 cut(s) 490, 553, 577, 706
TaiI ACGT 1 cut(s) 837
TaqI TCGA 3 cut(s) 368, 773, 826
TasI AATT 4 cut(s) 156, 594, 792, 808
TatI WGTACW 2 cut(s) 78, 577
TfiI GAWTC 2 cut(s) 104, 570
Tru1I TTAA 3 cut(s) 431, 668, 800
Tru9I TTAA 3 cut(s) 431, 668, 800
TscAI CASTG 3 cut(s) 558, 580, 717
TseFI GTSAC 2 cut(s) 180, 904
TseI GCWGC 2 cut(s) 273, 283
Tsp45I GTSAC 2 cut(s) 180, 904
TspDTI ATGAA 2 cut(s) 596, 924
TspRI CASTG 3 cut(s) 558, 580, 717
VpaK11BI GGWCC 2 cut(s) 60, 252
XagI CCTNNNNNAGG 1 cut(s) 262
XapI RAATTY 1 cut(s) 808
XhoI CTCGAG 1 cut(s) 825
XspI CTAG 2 cut(s) 33, 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.