AT5G40990

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
16418842 .. 16420616
1775 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G40990.1

Sequence Viewer

Length: 1125 bp
ATGGAAAACTCTCAATTAGTTTCGATCACTTTCTTAGCTTACACTATAATCATATCAATCGGCTCCATCAACTGCATAGACAACAATAATCTTGTAACAAACCAATCCGCTCTGTTCGTGTTTGGAGATTCTGTGTTCGATGCTGGAAATAACAACTACATCGATACTCTCTCTAGTGTCCGGTCTAATTACTGGCCGTATGGTCAAACAACATTCAAATCCCCTACTGGAAGAGTCTCTGACGGACGTTTGATTCCTGATTTCATCGCGGAGTACGCATGGTTACCGTTGATCCCGCCAAATTTACAACCATTCAACGGTAACAGCCAATTTGCCTATGGGGTAAACTTTGCGTCAGGTGGCGCCGGAGCTTTAGTCGGAACCTTTTCTGGATTGGTGATAAATTTGAGAACACAATTAAACAACTTCAAAAAGGTTGAAGAAATGTTAAGGTCTAAGTTAGGAGATGCTGAGGGGAAGAGGGTTATCTCAAGAGCTGTTTATTTGTTTCATATTGGACTCAACGACTATCAATATCCATTCACTACAAATTCTTCCTTATTTCAATCCATTTCCAACGAGAAATACGTAGATTATGTTGTCGGTAACATGACAGACGTTTTCAAGGAAGTGTATAATCTTGGAGGAAGGAAGTTTGGAATCTTGAACACGGGACCGTACGATTGTGCACCAGCCTCATTGGTTATAGACCAAACAAAAATAAGATCTTGTTTCCAGCCGGTCACTGAACTGATCAATATGCACAACGAGAAGCTTCTGAATGGTTTGAGACGGCTAAATCATGAACTATCCGGATTCAAATACGCCCTTCACGACTATCACACTTCCCTATCGGAAAGGATGAACGATCCTTCAAAATATGGGTTCAAGGAGGGGAAGAAAGCATGTTGCGGAAGCGGACCATTGAGAGGAATCAATACGTGTGGAGGCCGAATGGGACTGTCGCAAAGTTACGAGTTATGTGAAAACGTTACAGACTATTTGTTCTTTGATCCTTTTCATTTGACGGAAAAGGCTAATCGACAGATCGCTGAGCTGATTTGGAGCGGACCTACCAACATTACTGGACCCTATAATCTCAAAGCGCTGTTTGAACTTAATTAA

Protein Analysis

374

Amino Acids

41.71

Weight (kDa)

6.6

Isoelectric Point (pI)

33.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 38 - 354 6e-27 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 362
AccBSI CCGCTC 2 cut(s) 110, 1068
AccII CGCG 1 cut(s) 269
AccIII TCCGGA 1 cut(s) 812
AciI CCGC 6 cut(s) 108, 269, 296, 912, 918, 1068
AclI AACGTT 1 cut(s) 990
AclWI GGATC 3 cut(s) 286, 863, 1007
AcoI YGGCCR 1 cut(s) 194
AcsI RAATTY 3 cut(s) 301, 403, 550
AcyI GRCGYC 1 cut(s) 363
AfaI GTAC 2 cut(s) 275, 680
AfeI AGCGCT 1 cut(s) 1107
AfiI CCNNNNNNNGG 2 cut(s) 317, 929
AflIII ACRYGT 1 cut(s) 941
AluBI AGCT 5 cut(s) 38, 371, 497, 775, 1057
AluI AGCT 5 cut(s) 38, 371, 497, 775, 1057
Alw21I GWGCWC 1 cut(s) 691
Alw26I GTCTC 2 cut(s) 241, 784
Alw44I GTGCAC 1 cut(s) 687
AlwI GGATC 3 cut(s) 286, 863, 1007
Aor13HI TCCGGA 1 cut(s) 812
Aor51HI AGCGCT 1 cut(s) 1107
AoxI GGCC 2 cut(s) 194, 949
ApaLI GTGCAC 1 cut(s) 687
ApoI RAATTY 3 cut(s) 301, 403, 550
Asp700I GAANNNNTTC 1 cut(s) 385
AspLEI GCGC 2 cut(s) 365, 1108
AspS9I GGNCC 4 cut(s) 674, 920, 1070, 1088
AsuHPI GGTGA 1 cut(s) 409
AvaII GGWCC 4 cut(s) 674, 920, 1070, 1088
BaeGI GKGCMC 1 cut(s) 691
BanI GGYRCC 1 cut(s) 362
Bbv12I GWGCWC 1 cut(s) 691
BbvCI CCTCAGC 1 cut(s) 471
BccI CCATC 1 cut(s) 74
BceAI ACGGC 2 cut(s) 181, 809
BclI TGATCA 1 cut(s) 753
BcoDI GTCTC 2 cut(s) 241, 784
BfaI CTAG 1 cut(s) 174
BfoI RGCGCY 2 cut(s) 366, 1109
BglII AGATCT 1 cut(s) 725
BlpI GCTNAGC 1 cut(s) 1053
Bme18I GGWCC 4 cut(s) 674, 920, 1070, 1088
BmgT120I GGNCC 4 cut(s) 674, 920, 1070, 1088
BmiI GGNNCC 5 cut(s) 64, 364, 382, 675, 1090
BmsI GCATC 2 cut(s) 130, 457
Bpu10I CCTNAGC 1 cut(s) 471
Bpu1102I GCTNAGC 1 cut(s) 1053
BpuEI CTTGAG 1 cut(s) 475
Bsa29I ATCGAT 1 cut(s) 162
BsaAI YACGTR 2 cut(s) 589, 942
BsaHI GRCGYC 1 cut(s) 363
BsaWI WCCGGW 2 cut(s) 180, 812
BsaXI ACNNNNNCTCC 4 cut(s) 117, 147, 360, 390
Bsc4I CCNNNNNNNGG 2 cut(s) 317, 929
Bse118I RCCGGY 1 cut(s) 739
Bse1I ACTGG 3 cut(s) 197, 232, 1090
BseAI TCCGGA 1 cut(s) 812
BseCI ATCGAT 1 cut(s) 162
BseGI GGATG 1 cut(s) 867
BseLI CCNNNNNNNGG 2 cut(s) 317, 929
BseMII CTCAG 2 cut(s) 462, 1044
BseNI ACTGG 3 cut(s) 197, 232, 1090
BseSI GKGCMC 1 cut(s) 691
Bsh1236I CGCG 1 cut(s) 269
BshFI GGCC 2 cut(s) 196, 951
BshNI GGYRCC 1 cut(s) 362
BshVI ATCGAT 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 691
BsiSI CCGG 4 cut(s) 181, 366, 740, 813
BsiWI CGTACG 1 cut(s) 678
BslFI GGGAC 2 cut(s) 687, 972
BslI CCNNNNNNNGG 2 cut(s) 317, 929
BsmAI GTCTC 2 cut(s) 241, 784
BsmBI CGTCTC 1 cut(s) 784
BsmFI GGGAC 2 cut(s) 687, 972
BsnI GGCC 2 cut(s) 196, 951
Bsp1286I GDGCHC 1 cut(s) 691
Bsp13I TCCGGA 1 cut(s) 812
Bsp143I GATC 7 cut(s) 24, 291, 725, 753, 868, 1012, 1047
Bsp1720I GCTNAGC 1 cut(s) 1053
BspACI CCGC 6 cut(s) 108, 269, 296, 912, 918, 1068
BspANI GGCC 2 cut(s) 196, 951
BspCNI CTCAG 2 cut(s) 463, 1045
BspDI ATCGAT 1 cut(s) 162
BspEI TCCGGA 1 cut(s) 812
BspFNI CGCG 1 cut(s) 269
BspHI TCATGA 1 cut(s) 802
BspLI GGNNCC 5 cut(s) 64, 364, 382, 675, 1090
BspPI GGATC 3 cut(s) 286, 863, 1007
BspT107I GGYRCC 1 cut(s) 362
BsrBI CCGCTC 2 cut(s) 110, 1068
BsrFI RCCGGY 1 cut(s) 739
BsrI ACTGG 3 cut(s) 197, 232, 1090
BssAI RCCGGY 1 cut(s) 739
BssMI GATC 7 cut(s) 24, 291, 725, 753, 868, 1012, 1047
BssNI GRCGYC 1 cut(s) 363
Bst4CI ACNGT 4 cut(s) 288, 320, 678, 963
Bst6I CTCTTC 2 cut(s) 226, 473
BstACI GRCGYC 1 cut(s) 363
BstBAI YACGTR 2 cut(s) 589, 942
BstDEI CTNAG 4 cut(s) 34, 456, 471, 1053
BstEII GGTNACC 1 cut(s) 282
BstF5I GGATG 1 cut(s) 867
BstFNI CGCG 1 cut(s) 269
BstH2I RGCGCY 2 cut(s) 366, 1109
BstHHI GCGC 2 cut(s) 365, 1108
BstKTI GATC 7 cut(s) 27, 294, 728, 756, 871, 1015, 1050
BstMAI GTCTC 2 cut(s) 241, 784
BstMBI GATC 7 cut(s) 24, 291, 725, 753, 868, 1012, 1047
BstMWI GCNNNNNNNGC 1 cut(s) 275
BstNSI RCATGY 1 cut(s) 909
BstPI GGTNACC 1 cut(s) 282
BstSLI GKGCMC 1 cut(s) 691
BstSNI TACGTA 1 cut(s) 589
BstUI CGCG 1 cut(s) 269
BstX2I RGATCY 1 cut(s) 725
BstYI RGATCY 1 cut(s) 725
Bsu15I ATCGAT 1 cut(s) 162
BsuRI GGCC 2 cut(s) 196, 951
BsuTUI ATCGAT 1 cut(s) 162
BtgZI GCGATG 1 cut(s) 250
BtsCI GGATG 1 cut(s) 867
BtsIMutI CAGTG 1 cut(s) 744
CciI TCATGA 1 cut(s) 802
CfoI GCGC 2 cut(s) 365, 1108
Cfr10I RCCGGY 1 cut(s) 739
Cfr13I GGNCC 4 cut(s) 674, 920, 1070, 1088
ClaI ATCGAT 1 cut(s) 162
CseI GACGC 1 cut(s) 342
Csp6I GTAC 2 cut(s) 274, 679
CspCI CAANNNNNGTGG 2 cut(s) 925, 960
CviAII CATG 4 cut(s) 279, 610, 803, 906
CviQI GTAC 2 cut(s) 274, 679
DdeI CTNAG 4 cut(s) 34, 456, 471, 1053
DinI GGCGCC 1 cut(s) 364
DpnI GATC 7 cut(s) 26, 293, 727, 755, 870, 1014, 1049
DpnII GATC 7 cut(s) 24, 291, 725, 753, 868, 1012, 1047
EaeI YGGCCR 1 cut(s) 194
Eam1104I CTCTTC 2 cut(s) 226, 473
EarI CTCTTC 2 cut(s) 226, 473
Eco105I TACGTA 1 cut(s) 589
Eco47I GGWCC 4 cut(s) 674, 920, 1070, 1088
Eco47III AGCGCT 1 cut(s) 1107
Eco91I GGTNACC 1 cut(s) 282
EcoO65I GGTNACC 1 cut(s) 282
EgeI GGCGCC 1 cut(s) 364
EheI GGCGCC 1 cut(s) 364
Esp3I CGTCTC 1 cut(s) 784
FaeI CATG 4 cut(s) 282, 613, 806, 909
FaqI GGGAC 2 cut(s) 687, 972
FatI CATG 4 cut(s) 278, 609, 802, 905
FauI CCCGC 1 cut(s) 303
FbaI TGATCA 1 cut(s) 753
FokI GGATG 1 cut(s) 874
FspBI CTAG 1 cut(s) 174
GlaI GCGC 2 cut(s) 364, 1107
HaeII RGCGCY 2 cut(s) 366, 1109
HaeIII GGCC 2 cut(s) 196, 951
HapII CCGG 4 cut(s) 181, 366, 740, 813
HgaI GACGC 1 cut(s) 342
HhaI GCGC 2 cut(s) 365, 1108
Hin1I GRCGYC 1 cut(s) 363
Hin1II CATG 4 cut(s) 282, 613, 806, 909
Hin6I GCGC 2 cut(s) 363, 1106
HinP1I GCGC 2 cut(s) 363, 1106
HindIII AAGCTT 1 cut(s) 773
HinfI GANTC 7 cut(s) 128, 234, 253, 519, 660, 816, 933
HpaII CCGG 4 cut(s) 181, 366, 740, 813
HphI GGTGA 1 cut(s) 409
Hpy166II GTNNAC 2 cut(s) 346, 689
Hpy188I TCNGA 4 cut(s) 241, 380, 780, 856
Hpy188III TCNNGA 7 cut(s) 257, 390, 492, 664, 803, 813, 833
Hpy8I GTNNAC 2 cut(s) 346, 689
HpyAV CCTTC 3 cut(s) 642, 839, 882
HpyCH4III ACNGT 4 cut(s) 288, 320, 678, 963
HpyCH4IV ACGT 5 cut(s) 247, 588, 618, 941, 990
HpyCH4V TGCA 3 cut(s) 75, 689, 763
HpyF10VI GCNNNNNNNGC 1 cut(s) 275
HpyF3I CTNAG 4 cut(s) 34, 456, 471, 1053
HpySE526I ACGT 5 cut(s) 247, 588, 618, 941, 990
Hsp92I GRCGYC 1 cut(s) 363
Hsp92II CATG 4 cut(s) 282, 613, 806, 909
HspAI GCGC 2 cut(s) 363, 1106
KasI GGCGCC 1 cut(s) 362
Kpn2I TCCGGA 1 cut(s) 812
Ksp22I TGATCA 1 cut(s) 753
Kzo9I GATC 7 cut(s) 24, 291, 725, 753, 868, 1012, 1047
LmnI GCTCC 3 cut(s) 68, 368, 1065
LweI GCATC 2 cut(s) 130, 457
MaeI CTAG 1 cut(s) 174
MaeII ACGT 5 cut(s) 247, 588, 618, 941, 990
MaeIII GTNAC 7 cut(s) 94, 282, 320, 605, 742, 971, 991
MalI GATC 7 cut(s) 26, 293, 727, 755, 870, 1014, 1049
MbiI CCGCTC 2 cut(s) 110, 1068
MboI GATC 7 cut(s) 24, 291, 725, 753, 868, 1012, 1047
MboII GAAGA 5 cut(s) 243, 452, 490, 546, 910
MflI RGATCY 1 cut(s) 725
MhlI GDGCHC 1 cut(s) 691
MluCI AATT 8 cut(s) 14, 187, 301, 329, 403, 416, 550, 1120
Mly113I GGCGCC 1 cut(s) 363
MlyI GAGTC 2 cut(s) 243, 513
MmeI TCCRAC 2 cut(s) 358, 600
MnlI CCTC 7 cut(s) 466, 474, 638, 706, 886, 923, 941
MroI TCCGGA 1 cut(s) 812
MroXI GAANNNNTTC 1 cut(s) 385
MseI TTAA 4 cut(s) 419, 449, 1119, 1123
MspI CCGG 4 cut(s) 181, 366, 740, 813
MvnI CGCG 1 cut(s) 269
MwoI GCNNNNNNNGC 1 cut(s) 275
NarI GGCGCC 1 cut(s) 363
NdeII GATC 7 cut(s) 24, 291, 725, 753, 868, 1012, 1047
NlaIII CATG 4 cut(s) 282, 613, 806, 909
NlaIV GGNNCC 5 cut(s) 64, 364, 382, 675, 1090
NmuCI GTSAC 1 cut(s) 742
NspI RCATGY 1 cut(s) 909
PacI TTAATTAA 1 cut(s) 1123
PagI TCATGA 1 cut(s) 802
PcsI WCGNNNNNNNCGW 2 cut(s) 585, 831
PdmI GAANNNNTTC 1 cut(s) 385
PfeI GAWTC 5 cut(s) 128, 253, 660, 816, 933
Pfl23II CGTACG 1 cut(s) 678
PleI GAGTC 2 cut(s) 242, 513
PluTI GGCGCC 1 cut(s) 366
PpsI GAGTC 2 cut(s) 242, 513
Ppu21I YACGTR 2 cut(s) 589, 942
Psp1406I AACGTT 1 cut(s) 990
PspEI GGTNACC 1 cut(s) 282
PspLI CGTACG 1 cut(s) 678
PspN4I GGNNCC 5 cut(s) 64, 364, 382, 675, 1090
PspPI GGNCC 4 cut(s) 674, 920, 1070, 1088
PsuI RGATCY 1 cut(s) 725
RsaI GTAC 2 cut(s) 275, 680
RsaNI GTAC 2 cut(s) 274, 679
SaqAI TTAA 4 cut(s) 419, 449, 1119, 1123
Sau3AI GATC 7 cut(s) 24, 291, 725, 753, 868, 1012, 1047
Sau96I GGNCC 4 cut(s) 674, 920, 1070, 1088
SchI GAGTC 2 cut(s) 243, 513
SduI GDGCHC 1 cut(s) 691
SfaNI GCATC 2 cut(s) 130, 457
SfoI GGCGCC 1 cut(s) 364
SinI GGWCC 4 cut(s) 674, 920, 1070, 1088
SmlI CTYRAG 1 cut(s) 490
SmoI CTYRAG 1 cut(s) 490
SnaBI TACGTA 1 cut(s) 589
Sse9I AATT 8 cut(s) 14, 187, 301, 329, 403, 416, 550, 1120
SsiI CCGC 6 cut(s) 108, 269, 296, 912, 918, 1068
SspDI GGCGCC 1 cut(s) 362
SspMI CTAG 1 cut(s) 174
TaaI ACNGT 4 cut(s) 288, 320, 678, 963
TaiI ACGT 5 cut(s) 250, 591, 621, 944, 993
TaqI TCGA 4 cut(s) 23, 138, 162, 1042
TasI AATT 8 cut(s) 14, 187, 301, 329, 403, 416, 550, 1120
TfiI GAWTC 5 cut(s) 128, 253, 660, 816, 933
Tru1I TTAA 4 cut(s) 419, 449, 1119, 1123
Tru9I TTAA 4 cut(s) 419, 449, 1119, 1123
TscAI CASTG 1 cut(s) 751
TseFI GTSAC 1 cut(s) 742
Tsp45I GTSAC 1 cut(s) 742
TspDTI ATGAA 5 cut(s) 253, 500, 819, 878, 1010
TspGWI ACGGA 2 cut(s) 258, 1043
TspRI CASTG 1 cut(s) 751
VneI GTGCAC 1 cut(s) 687
VpaK11BI GGWCC 4 cut(s) 674, 920, 1070, 1088
XapI RAATTY 3 cut(s) 301, 403, 550
XceI RCATGY 1 cut(s) 909
XcmI CCANNNNNNNNNTGG 1 cut(s) 335
XmnI GAANNNNTTC 1 cut(s) 385
XspI CTAG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.