Rh1CG003800

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000193
Physical Location & Seq
Reverse (-)
441120 .. 446329
5210 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG003800.1

Sequence Viewer

Length: 504 bp
ATGGCAACTTCTTCAAGATTTCAAGTATATGTCCTGGCTTTTTGTGCAACCCTTCTTATTCAAAGTGGCTGTTATGGCCATTCTGTGCATCAGAGAAAACATGCAGCCTTGTTCATCTTCGGGGATTCAACATTTGATGTTGGAAATAATAACTACATAAACACTTCCACTAACTTTCAAGCAAATTTCTTCCCATATGGGGAAACCTTCTTCAGCCACCCGACTGGTAGGTTCTCCGATGCTCATCTAATCCCAGATATCATTGGTTTCAAGGAAGCAGAGATGACATGCTGTGGCTCTGATCCATACAGAAGAATTAATAGCTGCGGAGGGAAGCGAGGTGTGACTGAGTATCAGTTATGTGACAATGTTACAGACTATGTCTACTTTGATTCCGGCCATCCCACAGAAAGGTATAACCAGAAACTTTCCAAGTTATGGTGGAGCCATACTTCTGATGTCACAGCACGTTACATCAATTTGAAAGAGCTATTTGAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

167

Amino Acids

19.06

Weight (kDa)

6.36

Isoelectric Point (pI)

17.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 438
AccI GTMKAC 1 cut(s) 384
AciI CCGC 1 cut(s) 327
AclWI GGATC 1 cut(s) 296
AcoI YGGCCR 2 cut(s) 76, 397
AcsI RAATTY 1 cut(s) 184
AcuI CTGAAG 1 cut(s) 196
AfiI CCNNNNNNNGG 3 cut(s) 199, 411, 438
AgsI TTSAA 8 cut(s) 15, 23, 62, 129, 179, 271, 484, 497
AjnI CCWGG 1 cut(s) 33
AluBI AGCT 2 cut(s) 324, 490
AluI AGCT 2 cut(s) 324, 490
AlwI GGATC 1 cut(s) 296
AoxI GGCC 2 cut(s) 76, 397
ApeKI GCWGC 2 cut(s) 104, 324
ApoI RAATTY 1 cut(s) 184
AseI ATTAAT 1 cut(s) 318
BalI TGGCCA 1 cut(s) 78
BbvI GCAGC 2 cut(s) 116, 311
BccI CCATC 1 cut(s) 408
BciT130I CCWGG 1 cut(s) 35
BisI GCNGC 2 cut(s) 105, 325
BlsI GCNGC 2 cut(s) 106, 326
Bme1390I CCNGG 1 cut(s) 35
BmiI GGNNCC 1 cut(s) 446
BmrFI CCNGG 1 cut(s) 35
BmsI GCATC 2 cut(s) 97, 229
BsaBI GATNNNNATC 1 cut(s) 243
Bsc4I CCNNNNNNNGG 3 cut(s) 199, 411, 438
Bse1I ACTGG 1 cut(s) 229
Bse8I GATNNNNATC 1 cut(s) 243
BseBI CCWGG 1 cut(s) 35
BseGI GGATG 1 cut(s) 400
BseJI GATNNNNATC 1 cut(s) 243
BseLI CCNNNNNNNGG 3 cut(s) 199, 411, 438
BseMII CTCAG 1 cut(s) 339
BseNI ACTGG 1 cut(s) 229
BseXI GCAGC 2 cut(s) 116, 311
BshFI GGCC 2 cut(s) 78, 399
BsiSI CCGG 1 cut(s) 396
BslI CCNNNNNNNGG 3 cut(s) 199, 411, 438
BsnI GGCC 2 cut(s) 78, 399
Bsp143I GATC 1 cut(s) 301
BspACI CCGC 1 cut(s) 327
BspANI GGCC 2 cut(s) 78, 399
BspCNI CTCAG 1 cut(s) 340
BspLI GGNNCC 1 cut(s) 446
BspPI GGATC 1 cut(s) 296
BsrI ACTGG 1 cut(s) 229
BssMI GATC 1 cut(s) 301
Bst2UI CCWGG 1 cut(s) 35
BstDEI CTNAG 1 cut(s) 348
BstF5I GGATG 1 cut(s) 400
BstKTI GATC 1 cut(s) 304
BstMBI GATC 1 cut(s) 301
BstMWI GCNNNNNNNGC 2 cut(s) 44, 75
BstNI CCWGG 1 cut(s) 35
BstNSI RCATGY 2 cut(s) 104, 291
BstSCI CCNGG 1 cut(s) 33
BstV1I GCAGC 2 cut(s) 116, 311
BstXI CCANNNNNNTGG 1 cut(s) 224
BsuRI GGCC 2 cut(s) 78, 399
BtsCI GGATG 1 cut(s) 400
CviAII CATG 2 cut(s) 101, 288
DdeI CTNAG 1 cut(s) 348
DpnI GATC 1 cut(s) 303
DpnII GATC 1 cut(s) 301
EaeI YGGCCR 2 cut(s) 76, 397
Eco32I GATATC 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 33
EcoRV GATATC 1 cut(s) 259
FaeI CATG 2 cut(s) 104, 291
FatI CATG 2 cut(s) 100, 287
FauNDI CATATG 1 cut(s) 196
FblI GTMKAC 1 cut(s) 384
Fnu4HI GCNGC 2 cut(s) 105, 325
FokI GGATG 1 cut(s) 387
Fsp4HI GCNGC 2 cut(s) 105, 325
GluI GCNGC 2 cut(s) 105, 325
HaeIII GGCC 2 cut(s) 78, 399
HapII CCGG 1 cut(s) 396
Hin1II CATG 2 cut(s) 104, 291
HinfI GANTC 2 cut(s) 125, 392
HpaII CCGG 1 cut(s) 396
Hpy166II GTNNAC 1 cut(s) 385
Hpy188I TCNGA 4 cut(s) 93, 238, 301, 457
Hpy188III TCNNGA 1 cut(s) 15
Hpy8I GTNNAC 1 cut(s) 385
HpyAV CCTTC 2 cut(s) 62, 217
HpyCH4IV ACGT 1 cut(s) 469
HpyCH4V TGCA 3 cut(s) 47, 88, 104
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 75
HpyF3I CTNAG 1 cut(s) 348
HpySE526I ACGT 1 cut(s) 469
Hsp92II CATG 2 cut(s) 104, 291
Kzo9I GATC 1 cut(s) 301
LmnI GCTCC 1 cut(s) 444
LpnPI CCDG 6 cut(s) 20, 47, 210, 267, 409, 434
Lsp1109I GCAGC 2 cut(s) 116, 311
LweI GCATC 2 cut(s) 97, 229
MaeII ACGT 1 cut(s) 469
MaeIII GTNAC 5 cut(s) 343, 362, 370, 460, 470
MalI GATC 1 cut(s) 303
MboI GATC 1 cut(s) 301
MboII GAAGA 5 cut(s) 3, 109, 181, 202, 324
MlsI TGGCCA 1 cut(s) 78
MluCI AATT 3 cut(s) 184, 315, 478
MluNI TGGCCA 1 cut(s) 78
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 2 cut(s) 323, 332
Mox20I TGGCCA 1 cut(s) 78
MscI TGGCCA 1 cut(s) 78
MseI TTAA 1 cut(s) 318
Msp20I TGGCCA 1 cut(s) 78
MspI CCGG 1 cut(s) 396
MspR9I CCNGG 1 cut(s) 35
MvaI CCWGG 1 cut(s) 35
MwoI GCNNNNNNNGC 2 cut(s) 44, 75
NdeI CATATG 1 cut(s) 196
NdeII GATC 1 cut(s) 301
NlaIII CATG 2 cut(s) 104, 291
NlaIV GGNNCC 1 cut(s) 446
NmuCI GTSAC 3 cut(s) 343, 362, 460
NspI RCATGY 2 cut(s) 104, 291
PfeI GAWTC 2 cut(s) 125, 392
PflFI GACNNNGTC 1 cut(s) 380
PflMI CCANNNNNTGG 1 cut(s) 438
PkrI GCNGC 2 cut(s) 106, 326
PshBI ATTAAT 1 cut(s) 318
Psp6I CCWGG 1 cut(s) 33
PspGI CCWGG 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 446
PsyI GACNNNGTC 1 cut(s) 380
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 2 cut(s) 105, 325
Sau3AI GATC 1 cut(s) 301
ScrFI CCNGG 1 cut(s) 35
SetI ASST 7 cut(s) 209, 233, 326, 343, 416, 472, 492
SfaNI GCATC 2 cut(s) 97, 229
Sse9I AATT 3 cut(s) 184, 315, 478
SsiI CCGC 1 cut(s) 327
StyD4I CCNGG 1 cut(s) 33
TaiI ACGT 1 cut(s) 472
TasI AATT 3 cut(s) 184, 315, 478
TfiI GAWTC 2 cut(s) 125, 392
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TseFI GTSAC 3 cut(s) 343, 362, 460
TseI GCWGC 2 cut(s) 104, 324
Tsp45I GTSAC 3 cut(s) 343, 362, 460
TspDTI ATGAA 1 cut(s) 103
Tth111I GACNNNGTC 1 cut(s) 380
Van91I CCANNNNNTGG 1 cut(s) 438
VspI ATTAAT 1 cut(s) 318
XapI RAATTY 1 cut(s) 184
XceI RCATGY 2 cut(s) 104, 291
XmiI GTMKAC 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.