Rh2AG456900

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000193
Physical Location & Seq
Reverse (-)
67201301 .. 67201928
628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG456900.1

Sequence Viewer

Length: 504 bp
ATGTGTCAGGGAATATATAAGAAAGGAGGAAGGAAATTTGGGTTTGCAAATGGAATCCCTCTTGGTTGTGCACCAATGATGAGGGCAACAAAGCCGGGAAACCCAGGCACCTGTGTGGATGAAATTACTGCAGTATTGAAACTGCACAATAAAATACTTGCTAAAGTCCTCCTCAAGCTTAAACGACAGCTTCGTGGATTTAAATATTCAAATCCAAATGTCTACTCTTACCTAGATGGAATCATTAAGAATCCATCACAACATGGCTTCAAGGAAGGAAATGTGTCATGTTGTGGCTCTGGTCCATACAGAGGAACTATGAGCTGTGGAGGAAAGAGAGGTGTGACCGAGTATCAATTATGTGACAATGTTAATGATTATGTCTTTTTCGACTCTGCCCATCCTACCGACAGGGCTAACGAGCAGGTTTCCAAGTATTGGTGGAGCCATACTACTCCTAATGAAGTGCCTCACGTTTATCTGAAAGAGCTATTCGAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

167

Amino Acids

18.64

Weight (kDa)

9.24

Isoelectric Point (pI)

16.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 9 - 146 3.9e-08 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 415
AccB1I GGYRCC 1 cut(s) 107
AccB7I CCANNNNNTGG 1 cut(s) 438
AccI GTMKAC 1 cut(s) 222
AcsI RAATTY 1 cut(s) 35
AfiI CCNNNNNNNGG 2 cut(s) 311, 438
AgsI TTSAA 3 cut(s) 139, 210, 271
AjnI CCWGG 1 cut(s) 103
AleI CACNNNNGTG 1 cut(s) 113
AluBI AGCT 4 cut(s) 178, 190, 324, 490
AluI AGCT 4 cut(s) 178, 190, 324, 490
Alw21I GWGCWC 1 cut(s) 73
Alw44I GTGCAC 1 cut(s) 69
ApaLI GTGCAC 1 cut(s) 69
ApoI RAATTY 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 302
AsuC2I CCSGG 1 cut(s) 96
AsuII TTCGAA 1 cut(s) 495
AvaII GGWCC 1 cut(s) 302
BaeGI GKGCMC 1 cut(s) 73
BanI GGYRCC 1 cut(s) 107
Bbv12I GWGCWC 1 cut(s) 73
BccI CCATC 3 cut(s) 230, 262, 408
BciT130I CCWGG 1 cut(s) 105
BcnI CCSGG 1 cut(s) 96
BfaI CTAG 1 cut(s) 233
BfmI CTRYAG 1 cut(s) 129
BfuAI ACCTGC 1 cut(s) 415
Bme1390I CCNGG 2 cut(s) 96, 105
Bme18I GGWCC 1 cut(s) 302
BmgT120I GGNCC 1 cut(s) 302
BmiI GGNNCC 2 cut(s) 109, 446
BmrFI CCNGG 2 cut(s) 96, 105
Bpu14I TTCGAA 1 cut(s) 495
BpuEI CTTGAG 1 cut(s) 158
BpuMI CCSGG 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 103
Bsc4I CCNNNNNNNGG 2 cut(s) 311, 438
BseBI CCWGG 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 103
BseGI GGATG 2 cut(s) 124, 400
BseLI CCNNNNNNNGG 2 cut(s) 311, 438
BseRI GAGGAG 1 cut(s) 161
BseSI GKGCMC 1 cut(s) 73
BsgI GTGCAG 1 cut(s) 128
BshNI GGYRCC 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 73
BsiSI CCGG 1 cut(s) 95
BslI CCNNNNNNNGG 2 cut(s) 311, 438
Bsp119I TTCGAA 1 cut(s) 495
Bsp1286I GDGCHC 1 cut(s) 73
BspLI GGNNCC 2 cut(s) 109, 446
BspMAI CTGCAG 1 cut(s) 133
BspMI ACCTGC 1 cut(s) 415
BspT104I TTCGAA 1 cut(s) 495
BspT107I GGYRCC 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 105
BstBI TTCGAA 1 cut(s) 495
BstF5I GGATG 2 cut(s) 124, 400
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 2 cut(s) 94, 103
BstSFI CTRYAG 1 cut(s) 129
BstSLI GKGCMC 1 cut(s) 73
BtsCI GGATG 2 cut(s) 124, 400
BveI ACCTGC 1 cut(s) 415
Cfr13I GGNCC 1 cut(s) 302
CviAII CATG 2 cut(s) 263, 288
CviJI RGCY 9 cut(s) 94, 178, 190, 267, 297, 324, 416, 447, 490
CviKI_1 RGCY 9 cut(s) 94, 178, 190, 267, 297, 324, 416, 447, 490
DraI TTTAAA 1 cut(s) 202
Eco47I GGWCC 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 103
FaeI CATG 2 cut(s) 266, 291
FaiI YATR 9 cut(s) 16, 18, 264, 289, 307, 320, 361, 381, 450
FatI CATG 2 cut(s) 262, 287
FblI GTMKAC 1 cut(s) 222
FokI GGATG 2 cut(s) 131, 387
FspBI CTAG 1 cut(s) 233
HapII CCGG 1 cut(s) 95
Hin1II CATG 2 cut(s) 266, 291
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 4 cut(s) 54, 240, 250, 392
HpaII CCGG 1 cut(s) 95
Hpy166II GTNNAC 2 cut(s) 71, 223
Hpy188I TCNGA 1 cut(s) 483
Hpy8I GTNNAC 2 cut(s) 71, 223
HpyAV CCTTC 2 cut(s) 24, 269
HpyCH4IV ACGT 1 cut(s) 474
HpyCH4V TGCA 4 cut(s) 47, 71, 131, 145
HpySE526I ACGT 1 cut(s) 474
Hsp92II CATG 2 cut(s) 266, 291
LmnI GCTCC 1 cut(s) 444
LpnPI CCDG 7 cut(s) 90, 108, 117, 124, 285, 397, 410
MaeI CTAG 1 cut(s) 233
MaeII ACGT 1 cut(s) 474
MaeIII GTNAC 2 cut(s) 343, 362
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 3 cut(s) 35, 123, 356
MlyI GAGTC 1 cut(s) 386
MnlI CCTC 9 cut(s) 20, 69, 75, 179, 182, 305, 323, 332, 480
MseI TTAA 4 cut(s) 180, 201, 246, 372
MslI CAYNNNNRTG 1 cut(s) 113
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 2 cut(s) 96, 105
MvaI CCWGG 1 cut(s) 105
NciI CCSGG 1 cut(s) 96
NlaIII CATG 2 cut(s) 266, 291
NlaIV GGNNCC 2 cut(s) 109, 446
NmuCI GTSAC 2 cut(s) 343, 362
NspV TTCGAA 1 cut(s) 495
OliI CACNNNNGTG 1 cut(s) 113
PcsI WCGNNNNNNNCGW 1 cut(s) 190
PfeI GAWTC 3 cut(s) 54, 240, 250
PflMI CCANNNNNTGG 1 cut(s) 438
PleI GAGTC 1 cut(s) 386
PpsI GAGTC 1 cut(s) 386
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 2 cut(s) 109, 446
PspPI GGNCC 1 cut(s) 302
PstI CTGCAG 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 113
SaqAI TTAA 4 cut(s) 180, 201, 246, 372
Sau96I GGNCC 1 cut(s) 302
SchI GAGTC 1 cut(s) 386
ScrFI CCNGG 2 cut(s) 96, 105
SduI GDGCHC 1 cut(s) 73
SetI ASST 9 cut(s) 113, 180, 192, 234, 326, 343, 429, 477, 492
SfcI CTRYAG 1 cut(s) 129
SfuI TTCGAA 1 cut(s) 495
SinI GGWCC 1 cut(s) 302
SmiI ATTTAAAT 1 cut(s) 202
SmiMI CAYNNNNRTG 1 cut(s) 113
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
Sse9I AATT 3 cut(s) 35, 123, 356
SspI AATATT 1 cut(s) 206
SspMI CTAG 1 cut(s) 233
StyD4I CCNGG 2 cut(s) 94, 103
SwaI ATTTAAAT 1 cut(s) 202
TaiI ACGT 1 cut(s) 477
TaqI TCGA 2 cut(s) 390, 495
TaqII GACCGA 1 cut(s) 362
TasI AATT 3 cut(s) 35, 123, 356
TfiI GAWTC 3 cut(s) 54, 240, 250
Tru1I TTAA 4 cut(s) 180, 201, 246, 372
Tru9I TTAA 4 cut(s) 180, 201, 246, 372
TseFI GTSAC 2 cut(s) 343, 362
Tsp45I GTSAC 2 cut(s) 343, 362
TspDTI ATGAA 2 cut(s) 135, 477
Van91I CCANNNNNTGG 1 cut(s) 438
VneI GTGCAC 1 cut(s) 69
VpaK11BI GGWCC 1 cut(s) 302
XapI RAATTY 1 cut(s) 35
XmiI GTMKAC 1 cut(s) 222
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.