RchiOBHm_Chr4g0407471

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
29702456 .. 29703181
726 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37870

Sequence Viewer

Length: 357 bp
ATGCATGCATCCCTTTTCATCTTCGGGGATTCAATATTTGATGCTGGAAACAATAACTACATCAACACCAGTCTGCGGGCAAATTTTCAACCATATGGTGAAACCTTTTTTAAGTATCCAACGGGAAGATTTTCGGATGGTCCTCTAATTACAGATTTTATAGGAGCTGGTGCTTTGGTTGAAACTAGCCACGGTTTGGTGATAGACTTTAATTCTCAGCTTTCATATTTTGAGCAAGTTGGTGAATCATTGAGGAAGAACTTAGGGGATGAAGAAGCCAAGACTTTAATATCAAAAGCTGTTTACTTATTTAGTGTCGGAGGGCCGGAGGCAATGATTACTCGTACATATTCGTGA

Protein Analysis

118

Amino Acids

13.01

Weight (kDa)

4.8

Isoelectric Point (pI)

21.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 196
AciI CCGC 1 cut(s) 76
AcsI RAATTY 1 cut(s) 82
AfaI GTAC 1 cut(s) 346
AfiI CCNNNNNNNGG 2 cut(s) 75, 196
AgsI TTSAA 3 cut(s) 33, 89, 182
AluBI AGCT 3 cut(s) 167, 220, 299
AluI AGCT 3 cut(s) 167, 220, 299
AoxI GGCC 1 cut(s) 323
ApoI RAATTY 1 cut(s) 82
Asp700I GAANNNNTTC 1 cut(s) 130
AspS9I GGNCC 2 cut(s) 140, 323
AsuHPI GGTGA 3 cut(s) 110, 211, 254
AvaII GGWCC 1 cut(s) 140
BccI CCATC 1 cut(s) 131
BciVI GTATCC 1 cut(s) 126
BfaI CTAG 1 cut(s) 186
BfuI GTATCC 1 cut(s) 126
Bme18I GGWCC 1 cut(s) 140
BmgT120I GGNCC 2 cut(s) 140, 323
BmsI GCATC 2 cut(s) 17, 31
BsaJI CCNNGG 1 cut(s) 190
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 196
Bse1I ACTGG 1 cut(s) 69
Bse3DI GCAATG 1 cut(s) 339
BseDI CCNNGG 1 cut(s) 190
BseGI GGATG 3 cut(s) 8, 142, 274
BseLI CCNNNNNNNGG 2 cut(s) 75, 196
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 1 cut(s) 230
BseNI ACTGG 1 cut(s) 69
BshFI GGCC 1 cut(s) 325
BsiSI CCGG 1 cut(s) 326
BslI CCNNNNNNNGG 2 cut(s) 75, 196
BsnI GGCC 1 cut(s) 325
BspACI CCGC 1 cut(s) 76
BspANI GGCC 1 cut(s) 325
BspCNI CTCAG 1 cut(s) 229
BsrDI GCAATG 1 cut(s) 339
BsrI ACTGG 1 cut(s) 69
BssECI CCNNGG 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 194
BstC8I GCNNGC 2 cut(s) 6, 78
BstDEI CTNAG 2 cut(s) 216, 262
BstDSI CCRYGG 1 cut(s) 190
BstF5I GGATG 3 cut(s) 8, 142, 274
BstNSI RCATGY 1 cut(s) 8
BsuI GTATCC 1 cut(s) 126
BsuRI GGCC 1 cut(s) 325
BtgI CCRYGG 1 cut(s) 190
BtsCI GGATG 3 cut(s) 8, 142, 274
Cac8I GCNNGC 2 cut(s) 6, 78
Cfr13I GGNCC 2 cut(s) 140, 323
Csp6I GTAC 1 cut(s) 345
CviAII CATG 1 cut(s) 5
CviJI RGCY 6 cut(s) 167, 189, 220, 278, 299, 325
CviKI_1 RGCY 6 cut(s) 167, 189, 220, 278, 299, 325
CviQI GTAC 1 cut(s) 345
DdeI CTNAG 2 cut(s) 216, 262
Eco47I GGWCC 1 cut(s) 140
EcoT22I ATGCAT 2 cut(s) 6, 10
FaeI CATG 1 cut(s) 8
FaiI YATR 6 cut(s) 6, 94, 96, 161, 226, 349
FatI CATG 1 cut(s) 4
FauI CCCGC 1 cut(s) 69
FauNDI CATATG 1 cut(s) 94
FokI GGATG 2 cut(s) 149, 281
FspBI CTAG 1 cut(s) 186
HaeIII GGCC 1 cut(s) 325
HapII CCGG 1 cut(s) 326
Hin1II CATG 1 cut(s) 8
HinfI GANTC 2 cut(s) 29, 245
HpaII CCGG 1 cut(s) 326
HphI GGTGA 3 cut(s) 110, 211, 254
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 2 cut(s) 136, 320
Hpy188III TCNNGA 1 cut(s) 354
Hpy8I GTNNAC 1 cut(s) 304
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4V TGCA 2 cut(s) 4, 8
HpyF3I CTNAG 2 cut(s) 216, 262
Hsp92II CATG 1 cut(s) 8
LmnI GCTCC 1 cut(s) 164
LpnPI CCDG 4 cut(s) 30, 82, 153, 339
LweI GCATC 2 cut(s) 17, 31
MaeI CTAG 1 cut(s) 186
MboII GAAGA 4 cut(s) 13, 138, 268, 284
MluCI AATT 3 cut(s) 82, 147, 211
MmeI TCCRAC 2 cut(s) 143, 298
MnlI CCTC 4 cut(s) 153, 246, 314, 322
Mph1103I ATGCAT 2 cut(s) 6, 10
MroXI GAANNNNTTC 1 cut(s) 130
MseI TTAA 3 cut(s) 111, 210, 287
MslI CAYNNNNRTG 1 cut(s) 352
MspI CCGG 1 cut(s) 326
NdeI CATATG 1 cut(s) 94
NlaIII CATG 1 cut(s) 8
NsiI ATGCAT 2 cut(s) 6, 10
NspI RCATGY 1 cut(s) 8
PaeI GCATGC 1 cut(s) 8
PdmI GAANNNNTTC 1 cut(s) 130
PfeI GAWTC 2 cut(s) 29, 245
PflMI CCANNNNNTGG 1 cut(s) 196
PspPI GGNCC 2 cut(s) 140, 323
RsaI GTAC 1 cut(s) 346
RsaNI GTAC 1 cut(s) 345
RseI CAYNNNNRTG 1 cut(s) 352
SaqAI TTAA 3 cut(s) 111, 210, 287
Sau96I GGNCC 2 cut(s) 140, 323
SetI ASST 4 cut(s) 107, 169, 222, 301
SfaNI GCATC 2 cut(s) 17, 31
SinI GGWCC 1 cut(s) 140
SmiMI CAYNNNNRTG 1 cut(s) 352
SphI GCATGC 1 cut(s) 8
Sse9I AATT 3 cut(s) 82, 147, 211
SsiI CCGC 1 cut(s) 76
SspI AATATT 1 cut(s) 36
SspMI CTAG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 194
TasI AATT 3 cut(s) 82, 147, 211
TfiI GAWTC 2 cut(s) 29, 245
Tru1I TTAA 3 cut(s) 111, 210, 287
Tru9I TTAA 3 cut(s) 111, 210, 287
TspDTI ATGAA 3 cut(s) 7, 213, 285
Van91I CCANNNNNTGG 1 cut(s) 196
VpaK11BI GGWCC 1 cut(s) 140
XapI RAATTY 1 cut(s) 82
XceI RCATGY 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 130
XspI CTAG 1 cut(s) 186
Zsp2I ATGCAT 2 cut(s) 6, 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.