Rorug05G0546600

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000193
Physical Location & Seq
Reverse (-)
73561235 .. 73561698
464 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0546600.1

Sequence Viewer

Length: 357 bp
ATGGTACAGAAAAACATAGTTATGAAGGTGCAAATGAGCTCTGAGAAATGCAGAACCAAGGCCTTGAAGATTGCCGCAGTGGCCAAAGGCGTGAGCAAAGTGTCGATAGAACCGGAGAAAGATCAGGTGGAAGTGATCGGAATCGGGATTGACTCCATGACCTTGACCATGACGATGAGGAAGAAGGTTGGGCATGCAGACATACTGAGTATTGAAGAAGTGAAAGCCGAGGAGAAAAAGCCTGATGGGTCAATTCCAATTACTTGCACAACAAGCTATAGTTATGCTCACTATCCGCGATATCCCACGCACTATCATGTGGTTCGTGAGGAACCAACCACTTGCTCCATTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

118

Amino Acids

13.17

Weight (kDa)

8.75

Isoelectric Point (pI)

46.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 298
AciI CCGC 2 cut(s) 75, 296
AcoI YGGCCR 1 cut(s) 81
AfaI GTAC 1 cut(s) 6
AgsI TTSAA 2 cut(s) 67, 215
AluBI AGCT 2 cut(s) 39, 276
AluI AGCT 2 cut(s) 39, 276
Alw21I GWGCWC 1 cut(s) 41
AoxI GGCC 2 cut(s) 60, 81
BalI TGGCCA 1 cut(s) 83
BanII GRGCYC 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 41
BccI CCATC 1 cut(s) 239
BfmI CTRYAG 1 cut(s) 277
BglI GCCNNNNNGGC 1 cut(s) 80
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
BmiI GGNNCC 1 cut(s) 333
BsaBI GATNNNNATC 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 57, 228
BsaWI WCCGGW 1 cut(s) 112
Bse8I GATNNNNATC 1 cut(s) 140
BseDI CCNNGG 2 cut(s) 57, 228
BseJI GATNNNNATC 1 cut(s) 140
BseMII CTCAG 2 cut(s) 33, 197
BseRI GAGGAG 1 cut(s) 245
Bsh1236I CGCG 1 cut(s) 298
BshFI GGCC 2 cut(s) 62, 83
BsiHKAI GWGCWC 1 cut(s) 41
BsiSI CCGG 1 cut(s) 113
BsnI GGCC 2 cut(s) 62, 83
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 2 cut(s) 121, 135
BspACI CCGC 2 cut(s) 75, 296
BspANI GGCC 2 cut(s) 62, 83
BspCNI CTCAG 2 cut(s) 34, 198
BspFNI CGCG 1 cut(s) 298
BspLI GGNNCC 1 cut(s) 333
BssECI CCNNGG 2 cut(s) 57, 228
BssMI GATC 2 cut(s) 121, 135
BssT1I CCWWGG 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 2 cut(s) 42, 206
BstFNI CGCG 1 cut(s) 298
BstKTI GATC 2 cut(s) 124, 138
BstMBI GATC 2 cut(s) 121, 135
BstMWI GCNNNNNNNGC 2 cut(s) 80, 273
BstNSI RCATGY 1 cut(s) 197
BstSFI CTRYAG 1 cut(s) 277
BstUI CGCG 1 cut(s) 298
BsuRI GGCC 2 cut(s) 62, 83
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 195
Csp6I GTAC 1 cut(s) 5
CviAII CATG 4 cut(s) 157, 169, 194, 317
CviJI RGCY 6 cut(s) 39, 62, 83, 227, 241, 276
CviKI_1 RGCY 6 cut(s) 39, 62, 83, 227, 241, 276
CviQI GTAC 1 cut(s) 5
DdeI CTNAG 2 cut(s) 42, 206
DpnI GATC 2 cut(s) 123, 137
DpnII GATC 2 cut(s) 121, 135
EaeI YGGCCR 1 cut(s) 81
Ecl136II GAGCTC 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 57
Eco147I AGGCCT 1 cut(s) 62
Eco24I GRGCYC 1 cut(s) 41
Eco32I GATATC 1 cut(s) 302
Eco53kI GAGCTC 1 cut(s) 39
EcoICRI GAGCTC 1 cut(s) 39
EcoRV GATATC 1 cut(s) 302
EcoT14I CCWWGG 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 4 cut(s) 160, 172, 197, 320
FatI CATG 4 cut(s) 156, 168, 193, 316
Fnu4HI GCNGC 1 cut(s) 75
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 75
HaeIII GGCC 2 cut(s) 62, 83
HapII CCGG 1 cut(s) 113
Hin1II CATG 4 cut(s) 160, 172, 197, 320
HinfI GANTC 2 cut(s) 141, 152
HpaII CCGG 1 cut(s) 113
Hpy188I TCNGA 2 cut(s) 43, 140
Hpy188III TCNNGA 2 cut(s) 145, 326
HpyAV CCTTC 2 cut(s) 19, 178
HpyCH4V TGCA 4 cut(s) 31, 51, 197, 267
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 273
HpyF3I CTNAG 2 cut(s) 42, 206
Hsp92II CATG 4 cut(s) 160, 172, 197, 320
Kzo9I GATC 2 cut(s) 121, 135
LmnI GCTCC 1 cut(s) 350
LpnPI CCDG 3 cut(s) 110, 126, 255
MalI GATC 2 cut(s) 123, 137
MboI GATC 2 cut(s) 121, 135
MboII GAAGA 3 cut(s) 79, 193, 227
MhlI GDGCHC 1 cut(s) 41
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 2 cut(s) 252, 258
MluNI TGGCCA 1 cut(s) 83
MlyI GAGTC 1 cut(s) 146
MnlI CCTC 3 cut(s) 171, 223, 322
Mox20I TGGCCA 1 cut(s) 83
MscI TGGCCA 1 cut(s) 83
MslI CAYNNNNRTG 3 cut(s) 20, 173, 315
Msp20I TGGCCA 1 cut(s) 83
MspI CCGG 1 cut(s) 113
MvnI CGCG 1 cut(s) 298
MwoI GCNNNNNNNGC 2 cut(s) 80, 273
NdeII GATC 2 cut(s) 121, 135
NlaIII CATG 4 cut(s) 160, 172, 197, 320
NlaIV GGNNCC 1 cut(s) 333
NmeAIII GCCGAG 1 cut(s) 253
NspI RCATGY 1 cut(s) 197
PaeI GCATGC 1 cut(s) 197
PceI AGGCCT 1 cut(s) 62
PfeI GAWTC 1 cut(s) 141
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
Psp124BI GAGCTC 1 cut(s) 41
PspN4I GGNNCC 1 cut(s) 333
RsaI GTAC 1 cut(s) 6
RsaNI GTAC 1 cut(s) 5
RseI CAYNNNNRTG 3 cut(s) 20, 173, 315
SacI GAGCTC 1 cut(s) 41
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 2 cut(s) 121, 135
SchI GAGTC 1 cut(s) 146
SduI GDGCHC 1 cut(s) 41
SetI ASST 6 cut(s) 30, 41, 129, 164, 189, 278
SfcI CTRYAG 1 cut(s) 277
SmiMI CAYNNNNRTG 3 cut(s) 20, 173, 315
SphI GCATGC 1 cut(s) 197
Sse9I AATT 2 cut(s) 252, 258
SseBI AGGCCT 1 cut(s) 62
SsiI CCGC 2 cut(s) 75, 296
SstI GAGCTC 1 cut(s) 41
StuI AGGCCT 1 cut(s) 62
StyI CCWWGG 1 cut(s) 57
TaqI TCGA 1 cut(s) 104
TasI AATT 2 cut(s) 252, 258
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 1 cut(s) 141
TscAI CASTG 1 cut(s) 84
TspDTI ATGAA 1 cut(s) 38
TspRI CASTG 1 cut(s) 84
XceI RCATGY 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.