RLG00000020251

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000193
Physical Location & Seq
Reverse (-)
62873710 .. 62876973
3264 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020251

Sequence Viewer

Length: 936 bp
ATGAATTTCCTGAAAGACATTACTGGTCAGGAACTGAGTAGAGCCTATGATACAGATGGTGATGCCAGTTTCAGATCAGTTACATTTTGCGTGGCAATAGCATCTACTGTCAAGTGGGACACAGTCAAAATCTCTTTTAGTGCAGAGAAGGAGAAGACTTTCAATGCGGTGTTGACTCTGAAAAGCTTCCAGAAGCTCCATATTGATATAGTGTTGGACCTTAAAGCTCAACTGGGTTATTTCAAGAATGTGGAGAAGCAGTTGAGGCACAGACTAGGTGAAGCAGAAGCTCACAGATTTTTGTCCGAAGCTGTTTACTTGATTAGCATCGGAAGTAATGATTACATTGCCCCTTTCATAACGAATTCAAGTTTGTTCGAGTCTCACTCACATGAAGAATATGTTGGCATGGTGACAGGAAACCTGACAAATGTGATCAAAGAAATATACAAGAAAGGAGGAAGAAAATTTGGGGTTGCAGGCATGGAGCCTTTAGGTTGTACACCGGGCATGAGAACAGATAAACCAGGAAACACAAGCACCTGTGAAGAAGAAGTAAATGCAATTTCAAAACTCCACAATAGAGTACTTGCTAAAGTCCTCCTGAAGCTGAAAGGACAGCTCCAAGATTTCATATACTCGAATCCAAATTTCTACTCTTACCTAAATGACATAATTCATAATCCATCAAAACATGGTTTCAAGGAAGGAAAGATGGCATGCTGTGGCTCTGGTCCATACAGAGGAATTATGAGCTGCGGAGGGAAGCGAGGTGTGACTGAGTATCAGTTATGTGACAATGTTACTGACTTTGTCTTTTTTGATTCCGGCCATGCAACGGAAAGGGTATACCAGAAAGTTTCCAAGTTATGGTGGAGCCATACTCCTGATGTCACAGCACGTTACATCAATTTGAAAGAGCTATTTGAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

312

Amino Acids

35.01

Weight (kDa)

8.34

Isoelectric Point (pI)

24.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 89 - 290 6.8e-15 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 870
AccI GTMKAC 1 cut(s) 849
AciI CCGC 2 cut(s) 167, 759
AcoI YGGCCR 1 cut(s) 829
AcsI RAATTY 4 cut(s) 4, 364, 467, 649
AcuI CTGAAG 1 cut(s) 626
AfaI GTAC 2 cut(s) 502, 588
AfiI CCNNNNNNNGG 3 cut(s) 743, 838, 870
AgsI TTSAA 7 cut(s) 163, 244, 369, 570, 703, 916, 929
AjnI CCWGG 1 cut(s) 526
AjuI GAANNNNNNNTTGG 2 cut(s) 387, 419
AluBI AGCT 9 cut(s) 186, 196, 227, 290, 311, 610, 622, 756, 922
AluI AGCT 9 cut(s) 186, 196, 227, 290, 311, 610, 622, 756, 922
Alw26I GTCTC 1 cut(s) 387
AlwNI CAGNNNCTG 1 cut(s) 34
AoxI GGCC 1 cut(s) 829
ApeKI GCWGC 1 cut(s) 756
ApoI RAATTY 4 cut(s) 4, 364, 467, 649
Asp700I GAANNNNTTC 2 cut(s) 158, 185
AspS9I GGNCC 2 cut(s) 217, 734
AsuC2I CCSGG 1 cut(s) 507
AsuHPI GGTGA 3 cut(s) 71, 290, 424
AvaII GGWCC 2 cut(s) 217, 734
BbsI GAAGAC 1 cut(s) 161
BbvI GCAGC 1 cut(s) 743
BccI CCATC 3 cut(s) 50, 694, 709
BciT130I CCWGG 1 cut(s) 528
BclI TGATCA 1 cut(s) 435
BcnI CCSGG 1 cut(s) 507
BcoDI GTCTC 1 cut(s) 387
BfaI CTAG 1 cut(s) 275
BisI GCNGC 1 cut(s) 757
BlsI GCNGC 1 cut(s) 758
BmcAI AGTACT 1 cut(s) 588
Bme1390I CCNGG 2 cut(s) 507, 528
Bme18I GGWCC 2 cut(s) 217, 734
BmgT120I GGNCC 2 cut(s) 217, 734
BmiI GGNNCC 2 cut(s) 489, 878
BmrFI CCNGG 2 cut(s) 507, 528
BmrI ACTGGG 1 cut(s) 242
BmsI GCATC 3 cut(s) 52, 110, 336
BmuI ACTGGG 1 cut(s) 242
BpiI GAAGAC 1 cut(s) 161
BplI GAGNNNNNCTC 4 cut(s) 371, 403, 868, 900
BpuMI CCSGG 1 cut(s) 507
BsaBI GATNNNNATC 1 cut(s) 326
BsaXI ACNNNNNCTCC 2 cut(s) 245, 275
Bsc4I CCNNNNNNNGG 3 cut(s) 743, 838, 870
Bse1I ACTGG 3 cut(s) 28, 66, 237
Bse3DI GCAATG 1 cut(s) 345
Bse8I GATNNNNATC 1 cut(s) 326
BseBI CCWGG 1 cut(s) 528
BseJI GATNNNNATC 1 cut(s) 326
BseLI CCNNNNNNNGG 3 cut(s) 743, 838, 870
BseMI GCAATG 1 cut(s) 345
BseMII CTCAG 2 cut(s) 26, 771
BseNI ACTGG 3 cut(s) 28, 66, 237
BseXI GCAGC 1 cut(s) 743
BsgI GTGCAG 1 cut(s) 162
BshFI GGCC 1 cut(s) 831
BsiSI CCGG 2 cut(s) 506, 828
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 3 cut(s) 743, 838, 870
BsmAI GTCTC 1 cut(s) 387
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 1 cut(s) 831
Bsp1407I TGTACA 1 cut(s) 500
Bsp143I GATC 2 cut(s) 74, 435
BspACI CCGC 2 cut(s) 167, 759
BspANI GGCC 1 cut(s) 831
BspCNI CTCAG 2 cut(s) 27, 772
BspLI GGNNCC 2 cut(s) 489, 878
BsrDI GCAATG 1 cut(s) 345
BsrGI TGTACA 1 cut(s) 500
BsrI ACTGG 3 cut(s) 28, 66, 237
BssMI GATC 2 cut(s) 74, 435
BssNAI GTATAC 1 cut(s) 850
Bst1107I GTATAC 1 cut(s) 850
Bst2UI CCWGG 1 cut(s) 528
Bst4CI ACNGT 2 cut(s) 109, 124
BstAUI TGTACA 1 cut(s) 500
BstC8I GCNNGC 2 cut(s) 481, 721
BstDEI CTNAG 2 cut(s) 35, 780
BstKTI GATC 2 cut(s) 77, 438
BstMAI GTCTC 1 cut(s) 387
BstMBI GATC 2 cut(s) 74, 435
BstMWI GCNNNNNNNGC 1 cut(s) 265
BstNI CCWGG 1 cut(s) 528
BstNSI RCATGY 1 cut(s) 723
BstSCI CCNGG 2 cut(s) 505, 526
BstV1I GCAGC 1 cut(s) 743
BstV2I GAAGAC 1 cut(s) 161
BstZ17I GTATAC 1 cut(s) 850
BsuRI GGCC 1 cut(s) 831
Cac8I GCNNGC 2 cut(s) 481, 721
CaiI CAGNNNCTG 1 cut(s) 34
Cfr13I GGNCC 2 cut(s) 217, 734
Csp6I GTAC 2 cut(s) 501, 587
CviAII CATG 7 cut(s) 392, 409, 484, 511, 695, 720, 833
CviQI GTAC 2 cut(s) 501, 587
DdeI CTNAG 2 cut(s) 35, 780
DpnI GATC 2 cut(s) 76, 437
DpnII GATC 2 cut(s) 74, 435
EaeI YGGCCR 1 cut(s) 829
Eco47I GGWCC 2 cut(s) 217, 734
Eco57I CTGAAG 1 cut(s) 626
EcoRI GAATTC 1 cut(s) 364
EcoRII CCWGG 1 cut(s) 526
FaeI CATG 7 cut(s) 395, 412, 487, 514, 698, 723, 836
FaqI GGGAC 1 cut(s) 131
FatI CATG 7 cut(s) 391, 408, 483, 510, 694, 719, 832
FbaI TGATCA 1 cut(s) 435
FblI GTMKAC 1 cut(s) 849
Fnu4HI GCNGC 1 cut(s) 757
Fsp4HI GCNGC 1 cut(s) 757
FspBI CTAG 1 cut(s) 275
GluI GCNGC 1 cut(s) 757
HaeIII GGCC 1 cut(s) 831
HapII CCGG 2 cut(s) 506, 828
Hin1II CATG 7 cut(s) 395, 412, 487, 514, 698, 723, 836
HincII GTYRAC 1 cut(s) 174
HindII GTYRAC 1 cut(s) 174
HindIII AAGCTT 1 cut(s) 184
HinfI GANTC 4 cut(s) 175, 380, 643, 824
HpaII CCGG 2 cut(s) 506, 828
HphI GGTGA 3 cut(s) 71, 290, 424
Hpy166II GTNNAC 4 cut(s) 174, 316, 503, 850
Hpy188I TCNGA 4 cut(s) 74, 180, 307, 332
Hpy188III TCNNGA 6 cut(s) 10, 29, 190, 244, 604, 887
Hpy8I GTNNAC 4 cut(s) 174, 316, 503, 850
HpyAV CCTTC 2 cut(s) 142, 701
HpyCH4III ACNGT 2 cut(s) 109, 124
HpyCH4IV ACGT 1 cut(s) 901
HpyCH4V TGCA 4 cut(s) 143, 479, 563, 836
HpyF10VI GCNNNNNNNGC 1 cut(s) 265
HpyF3I CTNAG 2 cut(s) 35, 780
HpySE526I ACGT 1 cut(s) 901
Hsp92II CATG 7 cut(s) 395, 412, 487, 514, 698, 723, 836
Ksp22I TGATCA 1 cut(s) 435
Kzo9I GATC 2 cut(s) 74, 435
LmnI GCTCC 4 cut(s) 201, 487, 627, 876
Lsp1109I GCAGC 1 cut(s) 743
LweI GCATC 3 cut(s) 52, 110, 336
MaeI CTAG 1 cut(s) 275
MaeII ACGT 1 cut(s) 901
MaeIII GTNAC 7 cut(s) 79, 412, 775, 794, 802, 892, 902
MalI GATC 2 cut(s) 76, 437
MboI GATC 2 cut(s) 74, 435
MboII GAAGA 5 cut(s) 166, 407, 474, 560, 563
MluCI AATT 8 cut(s) 4, 364, 467, 564, 649, 675, 747, 910
MlyI GAGTC 2 cut(s) 169, 389
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 6 cut(s) 258, 452, 611, 737, 755, 764
MroXI GAANNNNTTC 2 cut(s) 158, 185
MseI TTAA 1 cut(s) 222
MslI CAYNNNNRTG 1 cut(s) 390
MspI CCGG 2 cut(s) 506, 828
MspR9I CCNGG 2 cut(s) 507, 528
MvaI CCWGG 1 cut(s) 528
MwoI GCNNNNNNNGC 1 cut(s) 265
NciI CCSGG 1 cut(s) 507
NdeII GATC 2 cut(s) 74, 435
NlaIII CATG 7 cut(s) 395, 412, 487, 514, 698, 723, 836
NlaIV GGNNCC 2 cut(s) 489, 878
NmuCI GTSAC 4 cut(s) 412, 775, 794, 892
NspI RCATGY 1 cut(s) 723
PaeI GCATGC 1 cut(s) 723
PdmI GAANNNNTTC 2 cut(s) 158, 185
PfeI GAWTC 2 cut(s) 643, 824
PflFI GACNNNGTC 2 cut(s) 122, 812
PflMI CCANNNNNTGG 1 cut(s) 870
PkrI GCNGC 1 cut(s) 758
PleI GAGTC 2 cut(s) 169, 388
PpsI GAGTC 2 cut(s) 169, 388
Psp6I CCWGG 1 cut(s) 526
PspGI CCWGG 1 cut(s) 526
PspN4I GGNNCC 2 cut(s) 489, 878
PspPI GGNCC 2 cut(s) 217, 734
PstNI CAGNNNCTG 1 cut(s) 34
PsyI GACNNNGTC 2 cut(s) 122, 812
RsaI GTAC 2 cut(s) 502, 588
RsaNI GTAC 2 cut(s) 501, 587
RseI CAYNNNNRTG 1 cut(s) 390
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 1 cut(s) 757
Sau3AI GATC 2 cut(s) 74, 435
Sau96I GGNCC 2 cut(s) 217, 734
ScaI AGTACT 1 cut(s) 588
SchI GAGTC 2 cut(s) 169, 389
ScrFI CCNGG 2 cut(s) 507, 528
SfaNI GCATC 3 cut(s) 52, 110, 336
SinI GGWCC 2 cut(s) 217, 734
SmiMI CAYNNNNRTG 1 cut(s) 390
SphI GCATGC 1 cut(s) 723
Sse9I AATT 8 cut(s) 4, 364, 467, 564, 649, 675, 747, 910
SsiI CCGC 2 cut(s) 167, 759
SspMI CTAG 1 cut(s) 275
StyD4I CCNGG 2 cut(s) 505, 526
TaaI ACNGT 2 cut(s) 109, 124
TaiI ACGT 1 cut(s) 904
TaqI TCGA 2 cut(s) 378, 641
TasI AATT 8 cut(s) 4, 364, 467, 564, 649, 675, 747, 910
TatI WGTACW 2 cut(s) 500, 586
TfiI GAWTC 2 cut(s) 643, 824
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TseFI GTSAC 4 cut(s) 412, 775, 794, 892
TseI GCWGC 1 cut(s) 756
Tsp45I GTSAC 4 cut(s) 412, 775, 794, 892
TspDTI ATGAA 5 cut(s) 17, 346, 408, 622, 668
TspGWI ACGGA 1 cut(s) 854
Tth111I GACNNNGTC 2 cut(s) 122, 812
Van91I CCANNNNNTGG 1 cut(s) 870
VpaK11BI GGWCC 2 cut(s) 217, 734
XapI RAATTY 4 cut(s) 4, 364, 467, 649
XceI RCATGY 1 cut(s) 723
XmiI GTMKAC 1 cut(s) 849
XmnI GAANNNNTTC 2 cut(s) 158, 185
XspI CTAG 1 cut(s) 275
ZrmI AGTACT 1 cut(s) 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.