AT1G53970

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
20148419 .. 20149749
1331 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G53970.2

Sequence Viewer

Length: 294 bp
ATGGAAGACAACAACAACAACAACAACAACAACAACAATCTGGTAACAGACCAATCCGCTTTGTTCGTGTTTGGAGATTCTGTGTTTGATGGCGGAAACAACAACTACATCGATACTCTTCCCAGTTTTCGATCTAATTACTGGCCATACGGCCAAACCACTTTCAAATTCTCTACCGGAAGAGTCTCCGACGGACGCTCAATTCTTGATTTCATCGCGAAGTATGCATGGTTACCGTTGATCCCGCCAGTTCTACAACCAAGTAACGGTAACAACCATATACTTATGAGGTAA

Protein Analysis

97

Amino Acids

10.98

Weight (kDa)

4.94

Isoelectric Point (pI)

48.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 218
AciI CCGC 3 cut(s) 57, 93, 245
AclWI GGATC 1 cut(s) 235
AcoI YGGCCR 2 cut(s) 143, 151
AcsI RAATTY 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 266
AgsI TTSAA 1 cut(s) 166
Alw26I GTCTC 1 cut(s) 190
AlwI GGATC 1 cut(s) 235
AoxI GGCC 2 cut(s) 143, 151
ApoI RAATTY 1 cut(s) 167
BalI TGGCCA 1 cut(s) 145
BbsI GAAGAC 1 cut(s) 12
BccI CCATC 1 cut(s) 83
BceAI ACGGC 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 190
BmrI ACTGGG 1 cut(s) 117
BmuI ACTGGG 1 cut(s) 117
BpiI GAAGAC 1 cut(s) 12
Bsa29I ATCGAT 1 cut(s) 111
BsaWI WCCGGW 1 cut(s) 176
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 1 cut(s) 266
Bse1I ACTGG 3 cut(s) 123, 146, 248
BseCI ATCGAT 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 266
BseNI ACTGG 3 cut(s) 123, 146, 248
Bsh1236I CGCG 1 cut(s) 218
BshFI GGCC 2 cut(s) 145, 153
BshVI ATCGAT 1 cut(s) 111
BsiSI CCGG 1 cut(s) 177
BslI CCNNNNNNNGG 1 cut(s) 266
BsmAI GTCTC 1 cut(s) 190
BsnI GGCC 2 cut(s) 145, 153
Bsp143I GATC 2 cut(s) 131, 240
Bsp68I TCGCGA 1 cut(s) 218
BspACI CCGC 3 cut(s) 57, 93, 245
BspANI GGCC 2 cut(s) 145, 153
BspDI ATCGAT 1 cut(s) 111
BspFNI CGCG 1 cut(s) 218
BspPI GGATC 1 cut(s) 235
BsrI ACTGG 3 cut(s) 123, 146, 248
BssMI GATC 2 cut(s) 131, 240
Bst4CI ACNGT 2 cut(s) 237, 269
Bst6I CTCTTC 2 cut(s) 123, 175
BstEII GGTNACC 1 cut(s) 231
BstFNI CGCG 1 cut(s) 218
BstKTI GATC 2 cut(s) 134, 243
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 2 cut(s) 131, 240
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstPI GGTNACC 1 cut(s) 231
BstUI CGCG 1 cut(s) 218
BstV2I GAAGAC 1 cut(s) 12
Bsu15I ATCGAT 1 cut(s) 111
BsuRI GGCC 2 cut(s) 145, 153
BsuTUI ATCGAT 1 cut(s) 111
BtgZI GCGATG 1 cut(s) 199
BtuMI TCGCGA 1 cut(s) 218
ClaI ATCGAT 1 cut(s) 111
CseI GACGC 1 cut(s) 204
CviAII CATG 1 cut(s) 228
CviJI RGCY 2 cut(s) 145, 153
CviKI_1 RGCY 2 cut(s) 145, 153
DpnI GATC 2 cut(s) 133, 242
DpnII GATC 2 cut(s) 131, 240
EaeI YGGCCR 2 cut(s) 143, 151
Eam1104I CTCTTC 2 cut(s) 123, 175
EarI CTCTTC 2 cut(s) 123, 175
EciI GGCGGA 1 cut(s) 108
Eco91I GGTNACC 1 cut(s) 231
EcoO65I GGTNACC 1 cut(s) 231
EcoT22I ATGCAT 1 cut(s) 229
FaeI CATG 1 cut(s) 231
FaiI YATR 6 cut(s) 148, 225, 229, 279, 281, 287
FatI CATG 1 cut(s) 227
FauI CCCGC 1 cut(s) 252
HaeIII GGCC 2 cut(s) 145, 153
HapII CCGG 1 cut(s) 177
HgaI GACGC 1 cut(s) 204
Hin1II CATG 1 cut(s) 231
HinfI GANTC 2 cut(s) 77, 183
HpaII CCGG 1 cut(s) 177
Hpy188I TCNGA 1 cut(s) 190
Hpy188III TCNNGA 2 cut(s) 206, 217
Hpy99I CGWCG 1 cut(s) 194
HpyCH4III ACNGT 2 cut(s) 237, 269
HpyCH4V TGCA 1 cut(s) 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
Hsp92II CATG 1 cut(s) 231
Kzo9I GATC 2 cut(s) 131, 240
LpnPI CCDG 5 cut(s) 26, 127, 136, 190, 261
MaeIII GTNAC 4 cut(s) 43, 231, 263, 269
MalI GATC 2 cut(s) 133, 242
MboI GATC 2 cut(s) 131, 240
MboII GAAGA 3 cut(s) 17, 110, 192
MlsI TGGCCA 1 cut(s) 145
MluCI AATT 3 cut(s) 136, 167, 201
MluNI TGGCCA 1 cut(s) 145
MlyI GAGTC 1 cut(s) 192
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 1 cut(s) 282
Mox20I TGGCCA 1 cut(s) 145
Mph1103I ATGCAT 1 cut(s) 229
MscI TGGCCA 1 cut(s) 145
Msp20I TGGCCA 1 cut(s) 145
MspI CCGG 1 cut(s) 177
MvnI CGCG 1 cut(s) 218
MwoI GCNNNNNNNGC 1 cut(s) 224
NdeII GATC 2 cut(s) 131, 240
NlaIII CATG 1 cut(s) 231
NruI TCGCGA 1 cut(s) 218
NsiI ATGCAT 1 cut(s) 229
PfeI GAWTC 1 cut(s) 77
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
PspEI GGTNACC 1 cut(s) 231
RruI TCGCGA 1 cut(s) 218
Sau3AI GATC 2 cut(s) 131, 240
SchI GAGTC 1 cut(s) 192
SetI ASST 1 cut(s) 293
Sse9I AATT 3 cut(s) 136, 167, 201
SsiI CCGC 3 cut(s) 57, 93, 245
TaaI ACNGT 2 cut(s) 237, 269
TaqI TCGA 2 cut(s) 111, 130
TasI AATT 3 cut(s) 136, 167, 201
TfiI GAWTC 1 cut(s) 77
TspDTI ATGAA 1 cut(s) 202
TspGWI ACGGA 1 cut(s) 207
XapI RAATTY 1 cut(s) 167
Zsp2I ATGCAT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.