Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000193

Physical Location & Seq

Genomic Coordinates Reverse (-)

27253469 .. 27253732

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g34510.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGAGTCCCAAGCCTCTTGTGCCTCTATTCAAATCCGGGCCTGGCTGTGGTACAAGGCTGTACAGAGCAGCTTATTGTGGTGGATACAATGGAACAAAACCATTTGAACTATTCAATGACGTTGGAGATTATCTGTGGTTTGATGGTAGCCATACGACTGAGGTTGCAAACATGCCAATAGCAGAGCTGCTATGGAGTGGAACACCCGATGTCACAGGACCTTACAATGTCAAACAACTATTTCAACATGTTTCAGCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009409 GO:0009505 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009625 GO:0009628 GO:0009941 GO:0009987 GO:0016020 GO:0016143 GO:0016145 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031967 GO:0031975 GO:0032991 GO:0042579 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0071944 GO:0098542 GO:0098588 GO:0098805 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

88

Amino Acids

9.54

Weight (kDa)

5.49

Isoelectric Point (pI)

25.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca	FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica	MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica	Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis	pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis	RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata	RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora	Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa	Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha	Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana	Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	52, 62
AfiI	CCNNNNNNNGG	1 cut(s)	47
AflIII	ACRYGT	1 cut(s)	247
AgsI	TTSAA	4 cut(s)	31, 107, 115, 245
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	3 cut(s)	71, 187, 257
AluI	AGCT	3 cut(s)	71, 187, 257
AoxI	GGCC	1 cut(s)	38
ApeKI	GCWGC	2 cut(s)	68, 187
AspS9I	GGNCC	2 cut(s)	38, 218
AsuC2I	CCSGG	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	218
BbvI	GCAGC	2 cut(s)	80, 174
BccI	CCATC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	42
BciVI	GTATCC	1 cut(s)	77
BcnI	CCSGG	1 cut(s)	37
BfuI	GTATCC	1 cut(s)	77
BisI	GCNGC	2 cut(s)	69, 188
BlsI	GCNGC	2 cut(s)	70, 189
Bme1390I	CCNGG	2 cut(s)	37, 42
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	2 cut(s)	38, 218
BmrFI	CCNGG	2 cut(s)	37, 42
BpuMI	CCSGG	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	42
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseMII	CTCAG	1 cut(s)	150
BseXI	GCAGC	2 cut(s)	80, 174
BshFI	GGCC	1 cut(s)	40
BsiSI	CCGG	1 cut(s)	36
BslI	CCNNNNNNNGG	1 cut(s)	47
BsnI	GGCC	1 cut(s)	40
Bsp1407I	TGTACA	1 cut(s)	60
BspANI	GGCC	1 cut(s)	40
BspCNI	CTCAG	1 cut(s)	151
BsrGI	TGTACA	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	42
BstAUI	TGTACA	1 cut(s)	60
BstDEI	CTNAG	1 cut(s)	159
BstMWI	GCNNNNNNNGC	1 cut(s)	19
BstNI	CCWGG	1 cut(s)	42
BstNSI	RCATGY	2 cut(s)	175, 251
BstSCI	CCNGG	2 cut(s)	35, 40
BstV1I	GCAGC	2 cut(s)	80, 174
BsuI	GTATCC	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	40
Cfr13I	GGNCC	2 cut(s)	38, 218
Csp6I	GTAC	2 cut(s)	51, 61
CviAII	CATG	2 cut(s)	172, 248
CviJI	RGCY	8 cut(s)	13, 40, 45, 58, 71, 150, 187, 257
CviKI_1	RGCY	8 cut(s)	13, 40, 45, 58, 71, 150, 187, 257
CviQI	GTAC	2 cut(s)	51, 61
DdeI	CTNAG	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	218
EcoO109I	RGGNCCY	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	40
FaeI	CATG	2 cut(s)	175, 251
FaiI	YATR	4 cut(s)	153, 173, 193, 249
FatI	CATG	2 cut(s)	171, 247
Fnu4HI	GCNGC	2 cut(s)	69, 188
Fsp4HI	GCNGC	2 cut(s)	69, 188
GluI	GCNGC	2 cut(s)	69, 188
HaeIII	GGCC	1 cut(s)	40
HapII	CCGG	1 cut(s)	36
Hin1II	CATG	2 cut(s)	175, 251
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	36
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	1 cut(s)	167
HpyF10VI	GCNNNNNNNGC	1 cut(s)	19
HpyF3I	CTNAG	1 cut(s)	159
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	2 cut(s)	175, 251
LpnPI	CCDG	4 cut(s)	27, 49, 54, 201
Lsp1109I	GCAGC	2 cut(s)	80, 174
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	211
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	103
MnlI	CCTC	3 cut(s)	24, 33, 154
MseI	TTAA	1 cut(s)	262
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	2 cut(s)	37, 42
MvaI	CCWGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	19
NciI	CCSGG	1 cut(s)	37
NlaIII	CATG	2 cut(s)	175, 251
NmuCI	GTSAC	1 cut(s)	211
NspI	RCATGY	2 cut(s)	175, 251
PciI	ACATGT	1 cut(s)	247
PkrI	GCNGC	2 cut(s)	70, 189
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PpuMI	RGGWCCY	1 cut(s)	218
PscI	ACATGT	1 cut(s)	247
Psp5II	RGGWCCY	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	40
PspPI	GGNCC	2 cut(s)	38, 218
PspPPI	RGGWCCY	1 cut(s)	218
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	2 cut(s)	52, 62
RsaNI	GTAC	2 cut(s)	51, 61
SaqAI	TTAA	1 cut(s)	262
SatI	GCNGC	2 cut(s)	69, 188
Sau96I	GGNCC	2 cut(s)	38, 218
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	2 cut(s)	37, 42
SetI	ASST	6 cut(s)	73, 123, 165, 189, 223, 259
SinI	GGWCC	1 cut(s)	218
StyD4I	CCNGG	2 cut(s)	35, 40
TaiI	ACGT	1 cut(s)	123
TatI	WGTACW	1 cut(s)	60
Tru1I	TTAA	1 cut(s)	262
Tru9I	TTAA	1 cut(s)	262
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	2 cut(s)	68, 187
Tsp45I	GTSAC	1 cut(s)	211
VpaK11BI	GGWCC	1 cut(s)	218
XceI	RCATGY	2 cut(s)	175, 251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.