RchiOBHm_Chr6g0252881

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000193
Physical Location & Seq
Reverse (-)
8103200 .. 8104947
1748 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22674

Sequence Viewer

Length: 609 bp
ATGCTAGAAACAATAAACTACATCAACAGTACCAAGACGGCTCAGGTCAACTATTGGCTATATGGAGAAACCTATTTTGGGTATCCCACAAGAAGATACACCGATGAGCGTATTTGTACGGTGATAGACATTCAAACTCAGCTTAGTTATTTCAAAAATGTAGAAAAGCAATTGAGGCACAAACTAGGCTATGCACAAGCCAAGACATTGCTTTCTAGTGCTCTGTACATTTTCAGCATCGGAAGCAATGATTACTTCGCTCCTCTGCGGTTTAACATCAGCAAGGAATTCTCATACTCACAAGAAGAATTCACAGGGATGGTGATTGGCAACTTAACACATGTGGTCAAAGTATGTTGTGGATCTAAGTGGTCCATAGAGAGCCGTTTAACTGTGGAGGGAAGGGGCCAGAGAAAGAGTATGAACTATATATTTTACAATCCTATTGACTATGTGTTCTTCGATGGCAGTCATCCTACAGAAAGAACTAACCAACAATTTTCCAAGCTAATGTGGAGTGAAAATTCCAATGTCACATGGCCTTGCAATGTTCAAGAACTATTTGGAACTCTTTGGGCAAAATATGTGTGTTCGACACCAAGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

202

Amino Acids

23.55

Weight (kDa)

8.51

Isoelectric Point (pI)

31.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 268
AclWI GGATC 1 cut(s) 370
AcsI RAATTY 3 cut(s) 287, 308, 523
AfaI GTAC 3 cut(s) 31, 118, 227
AfiI CCNNNNNNNGG 1 cut(s) 78
AflIII ACRYGT 1 cut(s) 340
AgsI TTSAA 3 cut(s) 134, 154, 554
AjuI GAANNNNNNNTTGG 2 cut(s) 60, 92
AluBI AGCT 2 cut(s) 142, 508
AluI AGCT 2 cut(s) 142, 508
Alw21I GWGCWC 1 cut(s) 223
AlwI GGATC 1 cut(s) 370
AoxI GGCC 2 cut(s) 406, 539
ApoI RAATTY 3 cut(s) 287, 308, 523
AspS9I GGNCC 2 cut(s) 372, 406
AsuHPI GGTGA 2 cut(s) 133, 334
AvaII GGWCC 1 cut(s) 372
Bbv12I GWGCWC 1 cut(s) 223
BccI CCATC 2 cut(s) 313, 458
BceAI ACGGC 2 cut(s) 54, 369
BciVI GTATCC 1 cut(s) 93
BfaI CTAG 3 cut(s) 5, 185, 216
BfmI CTRYAG 1 cut(s) 477
BfuI GTATCC 1 cut(s) 93
Bme18I GGWCC 1 cut(s) 372
BmgT120I GGNCC 2 cut(s) 372, 406
BmiI GGNNCC 1 cut(s) 407
BmsI GCATC 1 cut(s) 246
Bpu10I CCTNAGC 1 cut(s) 42
Bsc4I CCNNNNNNNGG 1 cut(s) 78
Bse3DI GCAATG 3 cut(s) 206, 253, 553
BseGI GGATG 2 cut(s) 324, 472
BseLI CCNNNNNNNGG 1 cut(s) 78
BseMI GCAATG 3 cut(s) 206, 253, 553
BseMII CTCAG 2 cut(s) 56, 152
BseRI GAGGAG 1 cut(s) 252
BshFI GGCC 2 cut(s) 408, 541
BsiHKAI GWGCWC 1 cut(s) 223
BslI CCNNNNNNNGG 1 cut(s) 78
BsnI GGCC 2 cut(s) 408, 541
Bsp1286I GDGCHC 1 cut(s) 223
Bsp1407I TGTACA 1 cut(s) 225
Bsp143I GATC 1 cut(s) 362
BspACI CCGC 1 cut(s) 268
BspANI GGCC 2 cut(s) 408, 541
BspCNI CTCAG 2 cut(s) 55, 151
BspLI GGNNCC 1 cut(s) 407
BspPI GGATC 1 cut(s) 370
BsrDI GCAATG 3 cut(s) 206, 253, 553
BsrGI TGTACA 1 cut(s) 225
BssMI GATC 1 cut(s) 362
Bst4CI ACNGT 3 cut(s) 29, 121, 394
BstAUI TGTACA 1 cut(s) 225
BstDEI CTNAG 4 cut(s) 42, 138, 143, 366
BstF5I GGATG 2 cut(s) 324, 472
BstKTI GATC 1 cut(s) 365
BstMBI GATC 1 cut(s) 362
BstMWI GCNNNNNNNGC 2 cut(s) 175, 243
BstNSI RCATGY 1 cut(s) 344
BstSFI CTRYAG 1 cut(s) 477
BstX2I RGATCY 1 cut(s) 362
BstYI RGATCY 1 cut(s) 362
BsuI GTATCC 1 cut(s) 93
BsuRI GGCC 2 cut(s) 408, 541
BtsCI GGATG 2 cut(s) 324, 472
Cfr13I GGNCC 2 cut(s) 372, 406
Csp6I GTAC 3 cut(s) 30, 117, 226
CviAII CATG 2 cut(s) 341, 537
CviJI RGCY 9 cut(s) 41, 58, 142, 189, 200, 384, 408, 508, 541
CviKI_1 RGCY 9 cut(s) 41, 58, 142, 189, 200, 384, 408, 508, 541
CviQI GTAC 3 cut(s) 30, 117, 226
DdeI CTNAG 4 cut(s) 42, 138, 143, 366
DpnI GATC 1 cut(s) 364
DpnII GATC 1 cut(s) 362
Eco47I GGWCC 1 cut(s) 372
EcoRI GAATTC 2 cut(s) 287, 308
FaeI CATG 2 cut(s) 344, 540
FatI CATG 2 cut(s) 340, 536
FokI GGATG 2 cut(s) 331, 459
FspBI CTAG 3 cut(s) 5, 185, 216
HaeIII GGCC 2 cut(s) 408, 541
Hin1II CATG 2 cut(s) 344, 540
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HphI GGTGA 2 cut(s) 133, 334
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 1 cut(s) 242
Hpy188III TCNNGA 2 cut(s) 554, 606
Hpy8I GTNNAC 1 cut(s) 49
HpyAV CCTTC 1 cut(s) 396
HpyCH4III ACNGT 3 cut(s) 29, 121, 394
HpyCH4V TGCA 2 cut(s) 194, 546
HpyF10VI GCNNNNNNNGC 2 cut(s) 175, 243
HpyF3I CTNAG 4 cut(s) 42, 138, 143, 366
Hsp92II CATG 2 cut(s) 344, 540
Kzo9I GATC 1 cut(s) 362
LmnI GCTCC 1 cut(s) 265
LpnPI CCDG 3 cut(s) 29, 300, 422
LweI GCATC 1 cut(s) 246
MaeI CTAG 3 cut(s) 5, 185, 216
MaeIII GTNAC 1 cut(s) 532
MalI GATC 1 cut(s) 364
MboI GATC 1 cut(s) 362
MboII GAAGA 3 cut(s) 105, 317, 451
MfeI CAATTG 1 cut(s) 170
MflI RGATCY 1 cut(s) 362
MhlI GDGCHC 1 cut(s) 223
MluCI AATT 5 cut(s) 170, 287, 308, 497, 523
MnlI CCTC 3 cut(s) 168, 273, 391
MseI TTAA 3 cut(s) 273, 335, 389
MslI CAYNNNNRTG 1 cut(s) 317
MunI CAATTG 1 cut(s) 170
MwoI GCNNNNNNNGC 2 cut(s) 175, 243
NdeII GATC 1 cut(s) 362
NlaIII CATG 2 cut(s) 344, 540
NlaIV GGNNCC 1 cut(s) 407
NmuCI GTSAC 1 cut(s) 532
NspI RCATGY 1 cut(s) 344
PciI ACATGT 1 cut(s) 340
PscI ACATGT 1 cut(s) 340
PspN4I GGNNCC 1 cut(s) 407
PspPI GGNCC 2 cut(s) 372, 406
PsuI RGATCY 1 cut(s) 362
RsaI GTAC 3 cut(s) 31, 118, 227
RsaNI GTAC 3 cut(s) 30, 117, 226
RseI CAYNNNNRTG 1 cut(s) 317
SaqAI TTAA 3 cut(s) 273, 335, 389
Sau3AI GATC 1 cut(s) 362
Sau96I GGNCC 2 cut(s) 372, 406
SduI GDGCHC 1 cut(s) 223
SetI ASST 4 cut(s) 48, 74, 144, 510
SfaNI GCATC 1 cut(s) 246
SfcI CTRYAG 1 cut(s) 477
SinI GGWCC 1 cut(s) 372
SmiMI CAYNNNNRTG 1 cut(s) 317
Sse9I AATT 5 cut(s) 170, 287, 308, 497, 523
SsiI CCGC 1 cut(s) 268
SspMI CTAG 3 cut(s) 5, 185, 216
TaaI ACNGT 3 cut(s) 29, 121, 394
TaqI TCGA 2 cut(s) 462, 593
TasI AATT 5 cut(s) 170, 287, 308, 497, 523
TatI WGTACW 1 cut(s) 225
Tru1I TTAA 3 cut(s) 273, 335, 389
Tru9I TTAA 3 cut(s) 273, 335, 389
TseFI GTSAC 1 cut(s) 532
Tsp45I GTSAC 1 cut(s) 532
TspDTI ATGAA 1 cut(s) 437
VpaK11BI GGWCC 1 cut(s) 372
XapI RAATTY 3 cut(s) 287, 308, 523
XceI RCATGY 1 cut(s) 344
XspI CTAG 3 cut(s) 5, 185, 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.