Rmu_co8353483.1_g000001

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8353483.1
OG0000193
Physical Location & Seq
Forward (+)
302 .. 949
648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8353483.1_g000001.1.cds

Sequence Viewer

Length: 537 bp
atgaattcagacgagttacttacctccaatgcattttttcaggaaatatacgagaaaggaggaagaagatttgggattaaaggcattgggaatttgggttgtataccgggcttgagaatagttaaaccaggaaacacaagcacctgtaatgaagaagtaaatgcactttcaaaactccacaatagagtacttgctaaagccctcctggagctgaaaggacagcttcaagacttcatatactcgaatccaaatttatacccttacgcagatgacgtagttcataatccatcaaaatatggtttcaaggaagcagagatggcatgctgtggctctggtccattaagaagaattagtagctgcggagggaagcgaggtgtgactgagtatcagttatgtgacaatgttactgactatgtctactttgattccggccatcccacagaaaggtataaccagaaactttcgaagttatggtggagccatactcctgatgtcacaggacgttacatcaatttgaaagagctatttgaagtatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

178

Amino Acids

20.05

Weight (kDa)

7.59

Isoelectric Point (pI)

30.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 103, 417
AciI CCGC 1 cut(s) 360
AcoI YGGCCR 1 cut(s) 430
AcsI RAATTY 3 cut(s) 4, 91, 250
AfaI GTAC 1 cut(s) 189
AfiI CCNNNNNNNGG 1 cut(s) 444
AgsI TTSAA 5 cut(s) 171, 227, 304, 517, 530
AjnI CCWGG 2 cut(s) 127, 204
AluBI AGCT 4 cut(s) 211, 223, 357, 523
AluI AGCT 4 cut(s) 211, 223, 357, 523
AoxI GGCC 1 cut(s) 430
ApeKI GCWGC 1 cut(s) 357
ApoI RAATTY 3 cut(s) 4, 91, 250
AspS9I GGNCC 1 cut(s) 335
AsuC2I CCSGG 1 cut(s) 108
AsuII TTCGAA 1 cut(s) 464
AvaII GGWCC 1 cut(s) 335
BbvI GCAGC 1 cut(s) 344
BccI CCATC 3 cut(s) 295, 310, 441
BciT130I CCWGG 2 cut(s) 129, 206
BcnI CCSGG 1 cut(s) 108
BisI GCNGC 1 cut(s) 358
BlsI GCNGC 1 cut(s) 359
BmcAI AGTACT 1 cut(s) 189
Bme1390I CCNGG 3 cut(s) 108, 129, 206
Bme18I GGWCC 1 cut(s) 335
BmgT120I GGNCC 1 cut(s) 335
BmiI GGNNCC 1 cut(s) 479
BmrFI CCNGG 3 cut(s) 108, 129, 206
BplI GAGNNNNNCTC 2 cut(s) 469, 501
BpmI CTGGAG 1 cut(s) 227
Bpu14I TTCGAA 1 cut(s) 464
BpuEI CTTGAG 1 cut(s) 133
BpuMI CCSGG 1 cut(s) 108
Bsc4I CCNNNNNNNGG 1 cut(s) 444
BseBI CCWGG 2 cut(s) 129, 206
BseGI GGATG 1 cut(s) 433
BseLI CCNNNNNNNGG 1 cut(s) 444
BseMII CTCAG 1 cut(s) 372
BseXI GCAGC 1 cut(s) 344
BshFI GGCC 1 cut(s) 432
BsiSI CCGG 2 cut(s) 107, 429
BslI CCNNNNNNNGG 1 cut(s) 444
BsnI GGCC 1 cut(s) 432
Bsp119I TTCGAA 1 cut(s) 464
BspACI CCGC 1 cut(s) 360
BspANI GGCC 1 cut(s) 432
BspCNI CTCAG 1 cut(s) 373
BspLI GGNNCC 1 cut(s) 479
BspT104I TTCGAA 1 cut(s) 464
BssNAI GTATAC 1 cut(s) 104
Bst1107I GTATAC 1 cut(s) 104
Bst2UI CCWGG 2 cut(s) 129, 206
BstBI TTCGAA 1 cut(s) 464
BstC8I GCNNGC 1 cut(s) 322
BstDEI CTNAG 1 cut(s) 381
BstF5I GGATG 1 cut(s) 433
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstNI CCWGG 2 cut(s) 129, 206
BstNSI RCATGY 1 cut(s) 324
BstSCI CCNGG 3 cut(s) 106, 127, 204
BstV1I GCAGC 1 cut(s) 344
BstZ17I GTATAC 1 cut(s) 104
BsuRI GGCC 1 cut(s) 432
BtsCI GGATG 1 cut(s) 433
Cac8I GCNNGC 1 cut(s) 322
Cfr13I GGNCC 1 cut(s) 335
Csp6I GTAC 1 cut(s) 188
CviAII CATG 1 cut(s) 321
CviJI RGCY 9 cut(s) 111, 200, 211, 223, 330, 357, 432, 480, 523
CviKI_1 RGCY 9 cut(s) 111, 200, 211, 223, 330, 357, 432, 480, 523
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 1 cut(s) 381
EaeI YGGCCR 1 cut(s) 430
Eco47I GGWCC 1 cut(s) 335
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 2 cut(s) 127, 204
EcoT22I ATGCAT 1 cut(s) 34
FaeI CATG 1 cut(s) 324
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FatI CATG 1 cut(s) 320
FblI GTMKAC 2 cut(s) 103, 417
Fnu4HI GCNGC 1 cut(s) 358
FokI GGATG 1 cut(s) 420
Fsp4HI GCNGC 1 cut(s) 358
GluI GCNGC 1 cut(s) 358
GsuI CTGGAG 1 cut(s) 227
HaeIII GGCC 1 cut(s) 432
HapII CCGG 2 cut(s) 107, 429
Hin1II CATG 1 cut(s) 324
HinfI GANTC 2 cut(s) 244, 425
HpaII CCGG 2 cut(s) 107, 429
Hpy166II GTNNAC 2 cut(s) 104, 418
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 3 cut(s) 41, 227, 488
Hpy8I GTNNAC 2 cut(s) 104, 418
HpyCH4IV ACGT 2 cut(s) 273, 502
HpyCH4V TGCA 2 cut(s) 32, 164
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpyF3I CTNAG 1 cut(s) 381
HpySE526I ACGT 2 cut(s) 273, 502
Hsp92II CATG 1 cut(s) 324
LmnI GCTCC 2 cut(s) 208, 477
Lsp1109I GCAGC 1 cut(s) 344
MaeII ACGT 2 cut(s) 273, 502
MaeIII GTNAC 6 cut(s) 15, 376, 395, 403, 493, 503
MboII GAAGA 4 cut(s) 75, 78, 164, 357
MluCI AATT 5 cut(s) 4, 91, 250, 348, 511
MnlI CCTC 5 cut(s) 34, 53, 212, 356, 365
Mph1103I ATGCAT 1 cut(s) 34
MseI TTAA 3 cut(s) 78, 123, 341
MspI CCGG 2 cut(s) 107, 429
MspR9I CCNGG 3 cut(s) 108, 129, 206
MvaI CCWGG 2 cut(s) 129, 206
MwoI GCNNNNNNNGC 1 cut(s) 317
NciI CCSGG 1 cut(s) 108
NlaIII CATG 1 cut(s) 324
NlaIV GGNNCC 1 cut(s) 479
NmuCI GTSAC 3 cut(s) 376, 395, 493
NsiI ATGCAT 1 cut(s) 34
NspI RCATGY 1 cut(s) 324
NspV TTCGAA 1 cut(s) 464
PaeI GCATGC 1 cut(s) 324
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PfeI GAWTC 2 cut(s) 244, 425
PflFI GACNNNGTC 1 cut(s) 413
PfoI TCCNGGA 1 cut(s) 204
PkrI GCNGC 1 cut(s) 359
Psp6I CCWGG 2 cut(s) 127, 204
PspGI CCWGG 2 cut(s) 127, 204
PspN4I GGNNCC 1 cut(s) 479
PspPI GGNCC 1 cut(s) 335
PsyI GACNNNGTC 1 cut(s) 413
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
SaqAI TTAA 3 cut(s) 78, 123, 341
SatI GCNGC 1 cut(s) 358
Sau96I GGNCC 1 cut(s) 335
ScaI AGTACT 1 cut(s) 189
ScrFI CCNGG 3 cut(s) 108, 129, 206
SfuI TTCGAA 1 cut(s) 464
SinI GGWCC 1 cut(s) 335
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
SphI GCATGC 1 cut(s) 324
Sse9I AATT 5 cut(s) 4, 91, 250, 348, 511
SsiI CCGC 1 cut(s) 360
StyD4I CCNGG 3 cut(s) 106, 127, 204
TaiI ACGT 2 cut(s) 276, 505
TaqI TCGA 2 cut(s) 242, 464
TasI AATT 5 cut(s) 4, 91, 250, 348, 511
TatI WGTACW 1 cut(s) 187
TfiI GAWTC 2 cut(s) 244, 425
Tru1I TTAA 3 cut(s) 78, 123, 341
Tru9I TTAA 3 cut(s) 78, 123, 341
TseFI GTSAC 3 cut(s) 376, 395, 493
TseI GCWGC 1 cut(s) 357
Tsp45I GTSAC 3 cut(s) 376, 395, 493
TspDTI ATGAA 4 cut(s) 17, 165, 223, 269
Tth111I GACNNNGTC 1 cut(s) 413
VpaK11BI GGWCC 1 cut(s) 335
XapI RAATTY 3 cut(s) 4, 91, 250
XceI RCATGY 1 cut(s) 324
XmiI GTMKAC 2 cut(s) 103, 417
ZrmI AGTACT 1 cut(s) 189
Zsp2I ATGCAT 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.