Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000193

Physical Location & Seq

Genomic Coordinates Reverse (-)

63018306 .. 63020355

Gene Structure 2050 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020264

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAACGATGAAATTAATATAAAAGATGATAATGTGATAGACCTTACTTCTCAGCTTTCATATTTTGAGCAAGTTCGTAAGTCATTGAGGAAGAATTTAGGGGATGAAGAGGCTAAGACTCTGATATCAAGAGCTATTTACTTGTTTAGTGTCGGAGGCAACGATTACTCATACATATTTGGTACAAACTCCAGCATCCTTCGAACCTACTCTCATAGGGAATTTGTAGGAACAGTTCTAGGCAACATAACTGCAGCAATCAAAGAAATATACAAGAAAGGAGGAAGAAATTTTGGGTTTCTTAGCCTTGATCCTCTTGGTTGTTTACCGTTCGCAAGAGCAGTTGAGCAGGAACAAAAAGGTCATGGATGCTTTGAAGAAATTACACCGTATGTAAAACTCCACAACAAAGCACTTCCAAAACTCCTTCAGAAGCTGGAGACTAAACTCAAGGGATTCAGATACTCACTTTCTGACTATAATCAGTTTCTGAGAGATAGGATGAATCACCCTTCTAAATATGGTTTTGAGGAGGGGAAGGTGGCATGTTGTGGAAGTGGTCCATATAGAGGAATTTTAAGCTGCGGAGGCGAGAGAGGTATCAAAGAGTATTATTTGTGCCCTAATGCAAGTAAATATGTCTTCTTTGACTCTGCCCATCCAACAGAAAGGGTCAATCAGCAATTTGCTAGGCTATTCTGGAGTGGAACTCCCAATTCCACTGCTCCTTACAATCTCAAAGCACTATTCGAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0006629 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009817 GO:0009861 GO:0009866 GO:0009871 GO:0009873 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0010928 GO:0010930 GO:0014070 GO:0016298 GO:0016787 GO:0016788 GO:0023051 GO:0023052 GO:0023057 GO:0031347 GO:0031349 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044238 GO:0044421 GO:0045087 GO:0045088 GO:0045089 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080134 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

253

Amino Acids

28.6

Weight (kDa)

8.88

Isoelectric Point (pI)

31.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	40 - 232	3e-17	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca	FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica	MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica	Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis	pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis	RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata	RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora	Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa	Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha	Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana	Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	585
AclWI	GGATC	1 cut(s)	305
AcsI	RAATTY	4 cut(s)	94, 221, 289, 573
AcuI	CTGAAG	1 cut(s)	413
AfaI	GTAC	1 cut(s)	184
AfiI	CCNNNNNNNGG	1 cut(s)	569
AgsI	TTSAA	1 cut(s)	377
AluBI	AGCT	4 cut(s)	55, 134, 436, 582
AluI	AGCT	4 cut(s)	55, 134, 436, 582
Alw26I	GTCTC	1 cut(s)	434
AlwI	GGATC	1 cut(s)	305
AlwNI	CAGNNNCTG	2 cut(s)	436, 490
ApeKI	GCWGC	2 cut(s)	254, 582
ApoI	RAATTY	4 cut(s)	94, 221, 289, 573
AseI	ATTAAT	1 cut(s)	15
AspS9I	GGNCC	1 cut(s)	560
AsuHPI	GGTGA	1 cut(s)	500
AsuII	TTCGAA	2 cut(s)	202, 750
AvaII	GGWCC	1 cut(s)	560
BaeGI	GKGCMC	1 cut(s)	623
BbsI	GAAGAC	1 cut(s)	634
BbvI	GCAGC	2 cut(s)	266, 569
BccI	CCATC	1 cut(s)	666
BcoDI	GTCTC	1 cut(s)	434
BfaI	CTAG	2 cut(s)	239, 690
BfmI	CTRYAG	1 cut(s)	252
BisI	GCNGC	2 cut(s)	255, 583
BlsI	GCNGC	2 cut(s)	256, 584
Bme18I	GGWCC	1 cut(s)	560
BmgT120I	GGNCC	1 cut(s)	560
BmsI	GCATC	2 cut(s)	204, 359
BpiI	GAAGAC	1 cut(s)	634
BplI	GAGNNNNNCTC	2 cut(s)	694, 726
BpmI	CTGGAG	3 cut(s)	175, 458, 721
Bpu14I	TTCGAA	2 cut(s)	202, 750
BpuEI	CTTGAG	1 cut(s)	434
Bsc4I	CCNNNNNNNGG	1 cut(s)	569
BseGI	GGATG	5 cut(s)	109, 195, 374, 507, 658
BseLI	CCNNNNNNNGG	1 cut(s)	569
BseMII	CTCAG	2 cut(s)	65, 482
BseRI	GAGGAG	1 cut(s)	545
BseSI	GKGCMC	1 cut(s)	623
BseXI	GCAGC	2 cut(s)	266, 569
BslI	CCNNNNNNNGG	1 cut(s)	569
BsmAI	GTCTC	1 cut(s)	434
Bsp119I	TTCGAA	2 cut(s)	202, 750
Bsp1286I	GDGCHC	1 cut(s)	623
Bsp143I	GATC	1 cut(s)	310
BspACI	CCGC	1 cut(s)	585
BspCNI	CTCAG	2 cut(s)	64, 483
BspMAI	CTGCAG	1 cut(s)	256
BspPI	GGATC	1 cut(s)	305
BspT104I	TTCGAA	2 cut(s)	202, 750
BssMI	GATC	1 cut(s)	310
Bst4CI	ACNGT	3 cut(s)	235, 330, 390
Bst6I	CTCTTC	1 cut(s)	102
BstBI	TTCGAA	2 cut(s)	202, 750
BstDEI	CTNAG	4 cut(s)	51, 114, 302, 491
BstF5I	GGATG	5 cut(s)	109, 195, 374, 507, 658
BstKTI	GATC	1 cut(s)	313
BstMAI	GTCTC	1 cut(s)	434
BstMBI	GATC	1 cut(s)	310
BstMWI	GCNNNNNNNGC	1 cut(s)	588
BstNSI	RCATGY	1 cut(s)	549
BstSFI	CTRYAG	1 cut(s)	252
BstSLI	GKGCMC	1 cut(s)	623
BstV1I	GCAGC	2 cut(s)	266, 569
BstV2I	GAAGAC	1 cut(s)	634
BtsCI	GGATG	5 cut(s)	109, 195, 374, 507, 658
BtsI	GCAGTG	1 cut(s)	720
BtsIMutI	CAGTG	1 cut(s)	720
CaiI	CAGNNNCTG	2 cut(s)	436, 490
Cfr13I	GGNCC	1 cut(s)	560
Csp6I	GTAC	1 cut(s)	183
CviAII	CATG	2 cut(s)	365, 546
CviJI	RGCY	7 cut(s)	55, 113, 134, 306, 436, 582, 694
CviKI_1	RGCY	7 cut(s)	55, 113, 134, 306, 436, 582, 694
CviQI	GTAC	1 cut(s)	183
DdeI	CTNAG	4 cut(s)	51, 114, 302, 491
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco32I	GATATC	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	560
Eco57I	CTGAAG	1 cut(s)	413
EcoRV	GATATC	1 cut(s)	126
FaeI	CATG	2 cut(s)	368, 549
FatI	CATG	2 cut(s)	364, 545
Fnu4HI	GCNGC	2 cut(s)	255, 583
FokI	GGATG	5 cut(s)	116, 182, 381, 514, 645
Fsp4HI	GCNGC	2 cut(s)	255, 583
FspBI	CTAG	2 cut(s)	239, 690
GluI	GCNGC	2 cut(s)	255, 583
GsuI	CTGGAG	3 cut(s)	175, 458, 721
Hin1II	CATG	2 cut(s)	368, 549
HinfI	GANTC	4 cut(s)	118, 456, 505, 650
HphI	GGTGA	1 cut(s)	500
Hpy166II	GTNNAC	1 cut(s)	326
Hpy188I	TCNGA	6 cut(s)	123, 155, 432, 461, 475, 492
Hpy188III	TCNNGA	2 cut(s)	129, 700
Hpy8I	GTNNAC	1 cut(s)	326
HpyAV	CCTTC	4 cut(s)	209, 437, 522, 532
HpyCH4III	ACNGT	3 cut(s)	235, 330, 390
HpyCH4V	TGCA	2 cut(s)	254, 629
HpyF10VI	GCNNNNNNNGC	1 cut(s)	588
HpyF3I	CTNAG	4 cut(s)	51, 114, 302, 491
Hsp92II	CATG	2 cut(s)	368, 549
Kzo9I	GATC	1 cut(s)	310
LmnI	GCTCC	1 cut(s)	730
LpnPI	CCDG	4 cut(s)	205, 335, 422, 685
Lsp1109I	GCAGC	2 cut(s)	266, 569
LweI	GCATC	2 cut(s)	204, 359
MaeI	CTAG	2 cut(s)	239, 690
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	5 cut(s)	103, 119, 297, 389, 634
MhlI	GDGCHC	1 cut(s)	623
MluCI	AATT	9 cut(s)	12, 94, 221, 289, 381, 573, 683, 715, 754
MlyI	GAGTC	2 cut(s)	112, 644
MmeI	TCCRAC	2 cut(s)	133, 686
MseI	TTAA	2 cut(s)	15, 578
MwoI	GCNNNNNNNGC	1 cut(s)	588
NdeII	GATC	1 cut(s)	310
NlaIII	CATG	2 cut(s)	368, 549
NspI	RCATGY	1 cut(s)	549
NspV	TTCGAA	2 cut(s)	202, 750
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PfeI	GAWTC	2 cut(s)	456, 505
PkrI	GCNGC	2 cut(s)	256, 584
PleI	GAGTC	2 cut(s)	112, 644
PpsI	GAGTC	2 cut(s)	112, 644
PshBI	ATTAAT	1 cut(s)	15
PspPI	GGNCC	1 cut(s)	560
PsrI	GAACNNNNNNTAC	2 cut(s)	219, 251
PstI	CTGCAG	1 cut(s)	256
PstNI	CAGNNNCTG	2 cut(s)	436, 490
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
SaqAI	TTAA	2 cut(s)	15, 578
SatI	GCNGC	2 cut(s)	255, 583
Sau3AI	GATC	1 cut(s)	310
Sau96I	GGNCC	1 cut(s)	560
SchI	GAGTC	2 cut(s)	112, 644
SduI	GDGCHC	1 cut(s)	623
SetI	ASST	9 cut(s)	45, 57, 136, 209, 364, 438, 543, 584, 601
SfaNI	GCATC	2 cut(s)	204, 359
SfcI	CTRYAG	1 cut(s)	252
SfuI	TTCGAA	2 cut(s)	202, 750
SinI	GGWCC	1 cut(s)	560
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
Sse9I	AATT	9 cut(s)	12, 94, 221, 289, 381, 573, 683, 715, 754
SsiI	CCGC	1 cut(s)	585
SspMI	CTAG	2 cut(s)	239, 690
TaaI	ACNGT	3 cut(s)	235, 330, 390
TaqI	TCGA	2 cut(s)	202, 750
TasI	AATT	9 cut(s)	12, 94, 221, 289, 381, 573, 683, 715, 754
TfiI	GAWTC	2 cut(s)	456, 505
Tru1I	TTAA	2 cut(s)	15, 578
Tru9I	TTAA	2 cut(s)	15, 578
TscAI	CASTG	1 cut(s)	727
TseI	GCWGC	2 cut(s)	254, 582
TspDTI	ATGAA	5 cut(s)	17, 24, 48, 120, 518
TspRI	CASTG	1 cut(s)	727
VpaK11BI	GGWCC	1 cut(s)	560
VspI	ATTAAT	1 cut(s)	15
XapI	RAATTY	4 cut(s)	94, 221, 289, 573
XceI	RCATGY	1 cut(s)	549
XspI	CTAG	2 cut(s)	239, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.