Rroxscaffold_2G00099530

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000193
Physical Location & Seq
Forward (+)
21279674 .. 21281272
1599 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00099530.1

Sequence Viewer

Length: 1116 bp
ATGGCAACTTCAAGGTTTCAAATATATATCCTGGCCTTTTATGCAAGCCTTCTTGTTCTAAAATGTAGCTGCCTTGGCAATTCTGTGCATCAGAGAAAACATGCAGCCTTGTTCATCTTTGGTGATGCACTATTTGATAATGGAAACAATAACTACTTAAACACTACTACTAAATATCAGTCAAATTTCTGGCCCTATGGGGAAACCTTCTTCAACCACTCAACTGGTAGATTTTCAGATGGGCGTCTAATCTCTGATTTCATTGCTGAGTATGCTAAGTTGCCACTTATACCACCATATTTACAACCTGGGTCCAAAGACTATACTTACGGGATCAACTTTGCATCTTCGGCTGCTGGTGCTCTAGCCGAGACTCATCCAGGATTTGTGATAGACCTTACAGCTCAACTAAGTTATTTCAAGAAGGTGGAGAAGCACTTGAGGCAGAAGCTAGGTGATGATAATGCTAACACATTGCTGTCCGAAGCGGTTTACTTAATTAGCATCGGCGGCAATGATTATTTTGCACCCTTTGTAAAAAACTCCAGTTTTTATGAGACTCAATCACCAGAAAAATTTGTTGGCATGGTGATTGGCAACCTAACGAATGTGATCAAAGGAATATATAAGAAAGGAGGAAGGAAATTTGGGTTTGCAAATGGAATCCCTCTTGGTTGTGTACCAATGATGAGGGCAACAAAGCGGGGAAACCCAGACACCTGTGTGGATGAAATTACTGCAGTATTGAAACTGCACAATAAAGTACTTGCTAAAGTCCTCCTCAAGCTTAAACGACAGCTTCATGGATTTAAATATTCAAATCCAAATGTCTACTCTTACCTAGATGGAATCATTAAGAATCCATCACAACATGGCTTCAAGGAAGGAAAGGTGTCATGTTGTGGCTCTGGTCCATACAGAGGAACTATGAGCTGTGGAGGAAAGAGAGGTGTGACCGAGTATCAATTATGTGACAATGTTAACGATTATGTCTTTTTCGACTCTGCCCATCCAACCGACAGGGCTAACGAGCAGGTTTCCAAGTATTGGTGGAGCCATACTACTCCTAATGTGAAAGTGCCTCACGTTTATCTGAAAGAGCTATTCGAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

371

Amino Acids

41.5

Weight (kDa)

9.15

Isoelectric Point (pI)

20.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 37 - 349 6.7e-26 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1024
AccB7I CCANNNNNTGG 1 cut(s) 1047
AccI GTMKAC 1 cut(s) 831
AciI CCGC 3 cut(s) 488, 510, 703
AclWI GGATC 1 cut(s) 341
AcsI RAATTY 3 cut(s) 184, 575, 644
AcyI GRCGYC 1 cut(s) 244
AfaI GTAC 2 cut(s) 681, 765
AfiI CCNNNNNNNGG 2 cut(s) 920, 1047
AgsI TTSAA 7 cut(s) 12, 20, 214, 421, 748, 819, 880
AjnI CCWGG 3 cut(s) 30, 307, 379
AjuI GAANNNNNNNTTGG 2 cut(s) 564, 596
AleI CACNNNNGTG 1 cut(s) 722
AluBI AGCT 7 cut(s) 69, 404, 451, 787, 799, 933, 1102
AluI AGCT 7 cut(s) 69, 404, 451, 787, 799, 933, 1102
Alw21I GWGCWC 1 cut(s) 364
Alw26I GTCTC 2 cut(s) 365, 551
AlwI GGATC 1 cut(s) 341
AoxI GGCC 2 cut(s) 33, 191
ApeKI GCWGC 3 cut(s) 69, 104, 353
ApoI RAATTY 3 cut(s) 184, 575, 644
AspS9I GGNCC 3 cut(s) 192, 312, 911
AsuHPI GGTGA 4 cut(s) 134, 467, 558, 601
AsuII TTCGAA 1 cut(s) 1107
AvaII GGWCC 2 cut(s) 312, 911
Bbv12I GWGCWC 1 cut(s) 364
BbvI GCAGC 3 cut(s) 56, 116, 340
BccI CCATC 4 cut(s) 233, 839, 871, 1017
BciT130I CCWGG 3 cut(s) 32, 309, 381
BclI TGATCA 1 cut(s) 612
BcoDI GTCTC 2 cut(s) 365, 551
BfaI CTAG 3 cut(s) 365, 452, 842
BfmI CTRYAG 1 cut(s) 738
BfuAI ACCTGC 1 cut(s) 1024
BisI GCNGC 4 cut(s) 70, 105, 354, 511
BlsI GCNGC 4 cut(s) 71, 106, 355, 512
BmcAI AGTACT 1 cut(s) 765
Bme1390I CCNGG 3 cut(s) 32, 309, 381
Bme18I GGWCC 2 cut(s) 312, 911
BmgT120I GGNCC 3 cut(s) 192, 312, 911
BmiI GGNNCC 2 cut(s) 313, 1055
BmrFI CCNGG 3 cut(s) 32, 309, 381
BmsI GCATC 4 cut(s) 97, 115, 353, 513
BpmI CTGGAG 1 cut(s) 529
Bpu14I TTCGAA 1 cut(s) 1107
BpuEI CTTGAG 2 cut(s) 460, 767
BsaHI GRCGYC 1 cut(s) 244
BsaJI CCNNGG 2 cut(s) 73, 308
Bsc4I CCNNNNNNNGG 2 cut(s) 920, 1047
Bse1I ACTGG 2 cut(s) 229, 546
Bse3DI GCAATG 3 cut(s) 261, 473, 520
BseBI CCWGG 3 cut(s) 32, 309, 381
BseDI CCNNGG 2 cut(s) 73, 308
BseGI GGATG 3 cut(s) 376, 733, 1009
BseLI CCNNNNNNNGG 2 cut(s) 920, 1047
BseMI GCAATG 3 cut(s) 261, 473, 520
BseMII CTCAG 1 cut(s) 258
BseNI ACTGG 2 cut(s) 229, 546
BseRI GAGGAG 1 cut(s) 770
BseXI GCAGC 3 cut(s) 56, 116, 340
BsgI GTGCAG 1 cut(s) 737
BshFI GGCC 2 cut(s) 35, 193
BsiHKAI GWGCWC 1 cut(s) 364
BslI CCNNNNNNNGG 2 cut(s) 920, 1047
BsmAI GTCTC 2 cut(s) 365, 551
BsnI GGCC 2 cut(s) 35, 193
Bsp119I TTCGAA 1 cut(s) 1107
Bsp1286I GDGCHC 1 cut(s) 364
Bsp143I GATC 2 cut(s) 333, 612
BspACI CCGC 3 cut(s) 488, 510, 703
BspANI GGCC 2 cut(s) 35, 193
BspCNI CTCAG 1 cut(s) 259
BspLI GGNNCC 2 cut(s) 313, 1055
BspMAI CTGCAG 1 cut(s) 742
BspMI ACCTGC 1 cut(s) 1024
BspPI GGATC 1 cut(s) 341
BspT104I TTCGAA 1 cut(s) 1107
BsrDI GCAATG 3 cut(s) 261, 473, 520
BsrI ACTGG 2 cut(s) 229, 546
BssECI CCNNGG 2 cut(s) 73, 308
BssMI GATC 2 cut(s) 333, 612
BssNI GRCGYC 1 cut(s) 244
BssT1I CCWWGG 1 cut(s) 73
Bst2UI CCWGG 3 cut(s) 32, 309, 381
BstACI GRCGYC 1 cut(s) 244
BstBI TTCGAA 1 cut(s) 1107
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 3 cut(s) 267, 276, 410
BstF5I GGATG 3 cut(s) 376, 733, 1009
BstKTI GATC 2 cut(s) 336, 615
BstMAI GTCTC 2 cut(s) 365, 551
BstMBI GATC 2 cut(s) 333, 612
BstMWI GCNNNNNNNGC 7 cut(s) 41, 75, 272, 350, 359, 442, 510
BstNI CCWGG 3 cut(s) 32, 309, 381
BstNSI RCATGY 1 cut(s) 104
BstSCI CCNGG 3 cut(s) 30, 307, 379
BstSFI CTRYAG 1 cut(s) 738
BstV1I GCAGC 3 cut(s) 56, 116, 340
BstXI CCANNNNNNTGG 1 cut(s) 224
BsuRI GGCC 2 cut(s) 35, 193
BtsCI GGATG 3 cut(s) 376, 733, 1009
BveI ACCTGC 1 cut(s) 1024
Cac8I GCNNGC 1 cut(s) 46
Cfr13I GGNCC 3 cut(s) 192, 312, 911
CseI GACGC 1 cut(s) 233
Csp6I GTAC 2 cut(s) 680, 764
CviAII CATG 5 cut(s) 101, 586, 803, 872, 897
CviQI GTAC 2 cut(s) 680, 764
DdeI CTNAG 3 cut(s) 267, 276, 410
DpnI GATC 2 cut(s) 335, 614
DpnII GATC 2 cut(s) 333, 612
DraI TTTAAA 1 cut(s) 811
Eco130I CCWWGG 1 cut(s) 73
Eco47I GGWCC 2 cut(s) 312, 911
EcoRII CCWGG 3 cut(s) 30, 307, 379
EcoT14I CCWWGG 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 73
FaeI CATG 5 cut(s) 104, 589, 806, 875, 900
FatI CATG 5 cut(s) 100, 585, 802, 871, 896
FauI CCCGC 1 cut(s) 696
FbaI TGATCA 1 cut(s) 612
FblI GTMKAC 1 cut(s) 831
Fnu4HI GCNGC 4 cut(s) 70, 105, 354, 511
FokI GGATG 3 cut(s) 363, 740, 996
Fsp4HI GCNGC 4 cut(s) 70, 105, 354, 511
FspBI CTAG 3 cut(s) 365, 452, 842
GluI GCNGC 4 cut(s) 70, 105, 354, 511
GsuI CTGGAG 1 cut(s) 529
HaeIII GGCC 2 cut(s) 35, 193
HgaI GACGC 1 cut(s) 233
Hin1I GRCGYC 1 cut(s) 244
Hin1II CATG 5 cut(s) 104, 589, 806, 875, 900
HincII GTYRAC 1 cut(s) 982
HindII GTYRAC 1 cut(s) 982
HindIII AAGCTT 1 cut(s) 785
HinfI GANTC 6 cut(s) 373, 559, 663, 849, 859, 1001
HpaI GTTAAC 1 cut(s) 982
HphI GGTGA 4 cut(s) 134, 467, 558, 601
Hpy166II GTNNAC 4 cut(s) 493, 680, 832, 982
Hpy188I TCNGA 5 cut(s) 93, 238, 256, 484, 1095
Hpy188III TCNNGA 1 cut(s) 421
Hpy8I GTNNAC 4 cut(s) 493, 680, 832, 982
HpyAV CCTTC 5 cut(s) 59, 217, 418, 633, 878
HpyCH4IV ACGT 1 cut(s) 1086
HpyCH4V TGCA 9 cut(s) 44, 88, 104, 128, 344, 527, 656, 740, 754
HpyF10VI GCNNNNNNNGC 7 cut(s) 41, 75, 272, 350, 359, 442, 510
HpyF3I CTNAG 3 cut(s) 267, 276, 410
HpySE526I ACGT 1 cut(s) 1086
Hsp92I GRCGYC 1 cut(s) 244
Hsp92II CATG 5 cut(s) 104, 589, 806, 875, 900
Ksp22I TGATCA 1 cut(s) 612
KspAI GTTAAC 1 cut(s) 982
Kzo9I GATC 2 cut(s) 333, 612
LmnI GCTCC 1 cut(s) 1053
Lsp1109I GCAGC 3 cut(s) 56, 116, 340
LweI GCATC 4 cut(s) 97, 115, 353, 513
MaeI CTAG 3 cut(s) 365, 452, 842
MaeII ACGT 1 cut(s) 1086
MaeIII GTNAC 2 cut(s) 952, 971
MalI GATC 2 cut(s) 335, 614
MboI GATC 2 cut(s) 333, 612
MboII GAAGA 2 cut(s) 202, 339
MhlI GDGCHC 1 cut(s) 364
MluCI AATT 7 cut(s) 79, 184, 498, 575, 644, 732, 965
MlyI GAGTC 3 cut(s) 367, 553, 995
MmeI TCCRAC 1 cut(s) 1037
MseI TTAA 6 cut(s) 158, 497, 789, 810, 855, 981
MslI CAYNNNNRTG 1 cut(s) 722
MspR9I CCNGG 3 cut(s) 32, 309, 381
MvaI CCWGG 3 cut(s) 32, 309, 381
MwoI GCNNNNNNNGC 7 cut(s) 41, 75, 272, 350, 359, 442, 510
NdeII GATC 2 cut(s) 333, 612
NlaIII CATG 5 cut(s) 104, 589, 806, 875, 900
NlaIV GGNNCC 2 cut(s) 313, 1055
NmeAIII GCCGAG 1 cut(s) 394
NmuCI GTSAC 2 cut(s) 952, 971
NspI RCATGY 1 cut(s) 104
NspV TTCGAA 1 cut(s) 1107
OliI CACNNNNGTG 1 cut(s) 722
PfeI GAWTC 3 cut(s) 663, 849, 859
PflMI CCANNNNNTGG 1 cut(s) 1047
PfoI TCCNGGA 1 cut(s) 379
PkrI GCNGC 4 cut(s) 71, 106, 355, 512
PleI GAGTC 3 cut(s) 367, 553, 995
PpsI GAGTC 3 cut(s) 367, 553, 995
Psp6I CCWGG 3 cut(s) 30, 307, 379
PspGI CCWGG 3 cut(s) 30, 307, 379
PspN4I GGNNCC 2 cut(s) 313, 1055
PspPI GGNCC 3 cut(s) 192, 312, 911
PstI CTGCAG 1 cut(s) 742
RsaI GTAC 2 cut(s) 681, 765
RsaNI GTAC 2 cut(s) 680, 764
RseI CAYNNNNRTG 1 cut(s) 722
SaqAI TTAA 6 cut(s) 158, 497, 789, 810, 855, 981
SatI GCNGC 4 cut(s) 70, 105, 354, 511
Sau3AI GATC 2 cut(s) 333, 612
Sau96I GGNCC 3 cut(s) 192, 312, 911
ScaI AGTACT 1 cut(s) 765
SchI GAGTC 3 cut(s) 367, 553, 995
ScrFI CCNGG 3 cut(s) 32, 309, 381
SduI GDGCHC 1 cut(s) 364
SfaNI GCATC 4 cut(s) 97, 115, 353, 513
SfcI CTRYAG 1 cut(s) 738
SfuI TTCGAA 1 cut(s) 1107
SinI GGWCC 2 cut(s) 312, 911
SmiI ATTTAAAT 1 cut(s) 811
SmiMI CAYNNNNRTG 1 cut(s) 722
SmlI CTYRAG 2 cut(s) 439, 782
SmoI CTYRAG 2 cut(s) 439, 782
Sse9I AATT 7 cut(s) 79, 184, 498, 575, 644, 732, 965
SsiI CCGC 3 cut(s) 488, 510, 703
SspI AATATT 1 cut(s) 815
SspMI CTAG 3 cut(s) 365, 452, 842
StyD4I CCNGG 3 cut(s) 30, 307, 379
StyI CCWWGG 1 cut(s) 73
SwaI ATTTAAAT 1 cut(s) 811
TaiI ACGT 1 cut(s) 1089
TaqI TCGA 2 cut(s) 999, 1107
TaqII GACCGA 1 cut(s) 971
TasI AATT 7 cut(s) 79, 184, 498, 575, 644, 732, 965
TatI WGTACW 1 cut(s) 763
TauI GCSGC 1 cut(s) 513
TfiI GAWTC 3 cut(s) 663, 849, 859
Tru1I TTAA 6 cut(s) 158, 497, 789, 810, 855, 981
Tru9I TTAA 6 cut(s) 158, 497, 789, 810, 855, 981
TseFI GTSAC 2 cut(s) 952, 971
TseI GCWGC 3 cut(s) 69, 104, 353
Tsp45I GTSAC 2 cut(s) 952, 971
TspDTI ATGAA 4 cut(s) 103, 250, 744, 791
Van91I CCANNNNNTGG 1 cut(s) 1047
VpaK11BI GGWCC 2 cut(s) 312, 911
XapI RAATTY 3 cut(s) 184, 575, 644
XceI RCATGY 1 cut(s) 104
XmiI GTMKAC 1 cut(s) 831
XspI CTAG 3 cut(s) 365, 452, 842
ZrmI AGTACT 1 cut(s) 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.