AT1G53990

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
20151016 .. 20152752
1737 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G53990.1

Sequence Viewer

Length: 1104 bp
ATGGTTCGATTAGTTTTGATCATCTTCTTCGTCTACACAATAATCTTGTCGATCGGCTCAATCAACTGCATAGACAATAATAATCTGGTAACAAATCAAGCTGCTTTGTTCGTGTTCGGAGATTCTCTTTTTGATGCCGGAAACAACAACTACATCAATACTGTCTCAAGTTTCCGGTCTAATATCTGGCCGTACGGTCAAACCAATTTCAAGTTTCCCACCGGAAGATTATCCGATGGACCCGAAAAGGCATGGTTGCCGTCGATCCCGCCAAATCTACAACCAAACAACGGTAACAATCAATTTACCTATGGAGTAAGTTTTGCTTCTGCTGGCGCCGGAGCTTTAGCCGAATCCTTTCTTGGAATGGTGATAAATTTGGGAACACAGTTAAACAACTTCAAAGATGTTGAAAAGAGCTTGAGATCTGAACTAGGAGATGCAGAAACCAAAAGGGTTTTCTCAAGAGCTGTTTATCTGTTTCATATCGGGGCCAACGACTATTTTTATCCTTTCTCTGCAAACTCCTCAACTTTCAAATCCAACTCCAAAGAGAAATTCGTCGATTTTGTTATCGGTAACATTACATTCGTTATCGAGGAAGTGTATAAAATGGGAGGAAGAAAGTTTGGATTTTTGAACGTGGGACCGTACGAATGTTCACCAAATTCATTGATAAGAGACCGAACAAAGATAGGATCTTGTTTCAAACCTGTCGCTGAGCTTATCGACATGCACAACAAGAAGTTTCCCGATGTTTTAAGGCGGCTACAACGCCAATTATCGGGTTTTAGATACGCCCTTCATGACTATCACACTTCTCTTTCCGAAAGAATCAACAGTCCTTCAAAATATGGGTTCAAGGAAGGGAAGAAGGCATGTTGTGGAAGCGGACCACTGAGAGGAATCAATACGTGTGGAAACAGAATAGGACCGTCGCAAGGTTACGGCCTATGCGAAAACGTTACCGATTATTTGTTCTATGATTCCTCTCATTTGACGGAAAAGGCTCATCGACAAATCGCAGAGCTGATTTGGAACGGGCCGCCTAATGTCACTAGACCTTATAATCTCAAAGCTTTATTTGAACTTAGGCTTACATAA

Protein Analysis

367

Amino Acids

41.11

Weight (kDa)

9.11

Isoelectric Point (pI)

39.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 36 - 345 3.2e-24 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1068
AccB1I GGYRCC 1 cut(s) 335
AccI GTMKAC 1 cut(s) 33
AciI CCGC 4 cut(s) 269, 766, 891, 1046
AclI AACGTT 1 cut(s) 963
AclWI GGATC 2 cut(s) 259, 706
AcoI YGGCCR 1 cut(s) 188
AcsI RAATTY 3 cut(s) 376, 557, 667
AcyI GRCGYC 1 cut(s) 336
AfaI GTAC 2 cut(s) 194, 653
AfiI CCNNNNNNNGG 4 cut(s) 290, 784, 902, 941
AflIII ACRYGT 1 cut(s) 914
AgsI TTSAA 9 cut(s) 211, 403, 413, 538, 640, 709, 849, 862, 1088
AjuI GAANNNNNNNTTGG 6 cut(s) 345, 377, 443, 475, 542, 574
AluBI AGCT 7 cut(s) 101, 344, 420, 470, 724, 1030, 1079
AluI AGCT 7 cut(s) 101, 344, 420, 470, 724, 1030, 1079
Alw26I GTCTC 2 cut(s) 169, 675
AlwI GGATC 2 cut(s) 259, 706
AoxI GGCC 4 cut(s) 188, 492, 949, 1043
ApeKI GCWGC 1 cut(s) 101
ApoI RAATTY 3 cut(s) 376, 557, 667
Asp700I GAANNNNTTC 1 cut(s) 357
AspLEI GCGC 1 cut(s) 338
AspS9I GGNCC 6 cut(s) 239, 492, 647, 893, 932, 1043
AsuHPI GGTGA 2 cut(s) 382, 654
AvaII GGWCC 4 cut(s) 239, 647, 893, 932
BanI GGYRCC 1 cut(s) 335
BbvI GCAGC 1 cut(s) 88
BccI CCATC 1 cut(s) 230
BceAI ACGGC 3 cut(s) 175, 244, 964
BclI TGATCA 1 cut(s) 18
BcoDI GTCTC 2 cut(s) 169, 675
BfaI CTAG 2 cut(s) 434, 1059
BfoI RGCGCY 1 cut(s) 339
BglII AGATCT 1 cut(s) 425
BisI GCNGC 3 cut(s) 102, 767, 1046
BlpI GCTNAGC 1 cut(s) 720
BlsI GCNGC 3 cut(s) 103, 768, 1047
Bme18I GGWCC 4 cut(s) 239, 647, 893, 932
BmgT120I GGNCC 6 cut(s) 239, 492, 647, 893, 932, 1043
BmiI GGNNCC 4 cut(s) 241, 337, 493, 648
BmsI GCATC 2 cut(s) 124, 430
Bpu1102I GCTNAGC 1 cut(s) 720
BpuEI CTTGAG 3 cut(s) 151, 442, 448
BsaAI YACGTR 1 cut(s) 915
BsaHI GRCGYC 1 cut(s) 336
BsaI GGTCTC 1 cut(s) 675
BsaWI WCCGGW 2 cut(s) 174, 221
Bsc4I CCNNNNNNNGG 4 cut(s) 290, 784, 902, 941
BseLI CCNNNNNNNGG 4 cut(s) 290, 784, 902, 941
BseMII CTCAG 2 cut(s) 711, 890
BseRI GAGGAG 1 cut(s) 517
BseXI GCAGC 1 cut(s) 88
Bsh1285I CGRYCG 1 cut(s) 54
BshFI GGCC 4 cut(s) 190, 494, 951, 1045
BshNI GGYRCC 1 cut(s) 335
BsiEI CGRYCG 1 cut(s) 54
BsiSI CCGG 4 cut(s) 138, 175, 222, 339
BsiWI CGTACG 2 cut(s) 192, 651
BslFI GGGAC 1 cut(s) 660
BslI CCNNNNNNNGG 4 cut(s) 290, 784, 902, 941
BsmAI GTCTC 2 cut(s) 169, 675
BsmFI GGGAC 1 cut(s) 660
BsnI GGCC 4 cut(s) 190, 494, 951, 1045
Bso31I GGTCTC 1 cut(s) 675
Bsp143I GATC 5 cut(s) 18, 51, 264, 425, 698
Bsp1720I GCTNAGC 1 cut(s) 720
BspACI CCGC 4 cut(s) 269, 766, 891, 1046
BspANI GGCC 4 cut(s) 190, 494, 951, 1045
BspCNI CTCAG 2 cut(s) 712, 891
BspHI TCATGA 1 cut(s) 805
BspLI GGNNCC 4 cut(s) 241, 337, 493, 648
BspPI GGATC 2 cut(s) 259, 706
BspT107I GGYRCC 1 cut(s) 335
BspTNI GGTCTC 1 cut(s) 675
BssMI GATC 5 cut(s) 18, 51, 264, 425, 698
BssNI GRCGYC 1 cut(s) 336
Bst4CI ACNGT 7 cut(s) 163, 197, 293, 390, 651, 842, 936
BstACI GRCGYC 1 cut(s) 336
BstBAI YACGTR 1 cut(s) 915
BstC8I GCNNGC 1 cut(s) 334
BstDEI CTNAG 3 cut(s) 720, 899, 1091
BstH2I RGCGCY 1 cut(s) 339
BstHHI GCGC 1 cut(s) 338
BstKTI GATC 5 cut(s) 21, 54, 267, 428, 701
BstMAI GTCTC 2 cut(s) 169, 675
BstMBI GATC 5 cut(s) 18, 51, 264, 425, 698
BstMCI CGRYCG 1 cut(s) 54
BstNSI RCATGY 2 cut(s) 736, 882
BstV1I GCAGC 1 cut(s) 88
BstX2I RGATCY 2 cut(s) 425, 698
BstYI RGATCY 2 cut(s) 425, 698
BsuRI GGCC 4 cut(s) 190, 494, 951, 1045
BtsIMutI CAGTG 1 cut(s) 896
Cac8I GCNNGC 1 cut(s) 334
CciI TCATGA 1 cut(s) 805
CfoI GCGC 1 cut(s) 338
Cfr13I GGNCC 6 cut(s) 239, 492, 647, 893, 932, 1043
Csp6I GTAC 2 cut(s) 193, 652
CspCI CAANNNNNGTGG 2 cut(s) 898, 933
CviAII CATG 4 cut(s) 252, 733, 806, 879
CviQI GTAC 2 cut(s) 193, 652
DdeI CTNAG 3 cut(s) 720, 899, 1091
DinI GGCGCC 1 cut(s) 337
DpnI GATC 5 cut(s) 20, 53, 266, 427, 700
DpnII GATC 5 cut(s) 18, 51, 264, 425, 698
EaeI YGGCCR 1 cut(s) 188
Eco31I GGTCTC 1 cut(s) 675
Eco47I GGWCC 4 cut(s) 239, 647, 893, 932
EgeI GGCGCC 1 cut(s) 337
EheI GGCGCC 1 cut(s) 337
FaeI CATG 4 cut(s) 255, 736, 809, 882
FalI AAGNNNNNCTT 2 cut(s) 310, 342
FaqI GGGAC 1 cut(s) 660
FatI CATG 4 cut(s) 251, 732, 805, 878
FauI CCCGC 1 cut(s) 276
FbaI TGATCA 1 cut(s) 18
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 3 cut(s) 102, 767, 1046
Fsp4HI GCNGC 3 cut(s) 102, 767, 1046
FspBI CTAG 2 cut(s) 434, 1059
GlaI GCGC 1 cut(s) 337
GluI GCNGC 3 cut(s) 102, 767, 1046
HaeII RGCGCY 1 cut(s) 339
HaeIII GGCC 4 cut(s) 190, 494, 951, 1045
HapII CCGG 4 cut(s) 138, 175, 222, 339
HhaI GCGC 1 cut(s) 338
Hin1I GRCGYC 1 cut(s) 336
Hin1II CATG 4 cut(s) 255, 736, 809, 882
Hin6I GCGC 1 cut(s) 336
HinP1I GCGC 1 cut(s) 336
HindIII AAGCTT 1 cut(s) 1077
HinfI GANTC 5 cut(s) 122, 353, 834, 906, 986
HpaII CCGG 4 cut(s) 138, 175, 222, 339
HphI GGTGA 2 cut(s) 382, 654
Hpy166II GTNNAC 2 cut(s) 34, 662
Hpy188I TCNGA 4 cut(s) 119, 235, 430, 829
Hpy188III TCNNGA 3 cut(s) 465, 752, 806
Hpy8I GTNNAC 2 cut(s) 34, 662
Hpy99I CGWCG 3 cut(s) 265, 566, 940
HpyAV CCTTC 4 cut(s) 812, 855, 860, 868
HpyCH4III ACNGT 7 cut(s) 163, 197, 293, 390, 651, 842, 936
HpyCH4IV ACGT 3 cut(s) 642, 914, 963
HpyCH4V TGCA 4 cut(s) 69, 443, 521, 736
HpyF3I CTNAG 3 cut(s) 720, 899, 1091
HpySE526I ACGT 3 cut(s) 642, 914, 963
Hsp92I GRCGYC 1 cut(s) 336
Hsp92II CATG 4 cut(s) 255, 736, 809, 882
HspAI GCGC 1 cut(s) 336
KasI GGCGCC 1 cut(s) 335
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 5 cut(s) 18, 51, 264, 425, 698
LmnI GCTCC 1 cut(s) 341
LpnPI CCDG 8 cut(s) 71, 151, 172, 188, 235, 318, 352, 726
Lsp1109I GCAGC 1 cut(s) 88
LweI GCATC 2 cut(s) 124, 430
MaeI CTAG 2 cut(s) 434, 1059
MaeII ACGT 3 cut(s) 642, 914, 963
MaeIII GTNAC 6 cut(s) 88, 293, 578, 944, 964, 1054
MalI GATC 5 cut(s) 20, 53, 266, 427, 700
MboI GATC 5 cut(s) 18, 51, 264, 425, 698
MboII GAAGA 5 cut(s) 16, 19, 237, 633, 883
MflI RGATCY 2 cut(s) 425, 698
MluCI AATT 6 cut(s) 205, 302, 376, 557, 667, 779
Mly113I GGCGCC 1 cut(s) 336
MmeI TCCRAC 1 cut(s) 567
MnlI CCTC 5 cut(s) 538, 592, 611, 896, 1000
MroXI GAANNNNTTC 1 cut(s) 357
MseI TTAA 2 cut(s) 392, 761
MspI CCGG 4 cut(s) 138, 175, 222, 339
NarI GGCGCC 1 cut(s) 336
NdeII GATC 5 cut(s) 18, 51, 264, 425, 698
NlaIII CATG 4 cut(s) 255, 736, 809, 882
NlaIV GGNNCC 4 cut(s) 241, 337, 493, 648
NmuCI GTSAC 1 cut(s) 1054
NspI RCATGY 2 cut(s) 736, 882
PagI TCATGA 1 cut(s) 805
PcsI WCGNNNNNNNCGW 2 cut(s) 495, 954
PdmI GAANNNNTTC 1 cut(s) 357
PfeI GAWTC 5 cut(s) 122, 353, 834, 906, 986
Pfl23II CGTACG 2 cut(s) 192, 651
PkrI GCNGC 3 cut(s) 103, 768, 1047
Ple19I CGATCG 1 cut(s) 54
PluTI GGCGCC 1 cut(s) 339
Ppu21I YACGTR 1 cut(s) 915
PsiI TTATAA 1 cut(s) 1068
Psp1406I AACGTT 1 cut(s) 963
PspLI CGTACG 2 cut(s) 192, 651
PspN4I GGNNCC 4 cut(s) 241, 337, 493, 648
PspPI GGNCC 6 cut(s) 239, 492, 647, 893, 932, 1043
PsuI RGATCY 2 cut(s) 425, 698
PvuI CGATCG 1 cut(s) 54
RsaI GTAC 2 cut(s) 194, 653
RsaNI GTAC 2 cut(s) 193, 652
SaqAI TTAA 2 cut(s) 392, 761
SatI GCNGC 3 cut(s) 102, 767, 1046
Sau3AI GATC 5 cut(s) 18, 51, 264, 425, 698
Sau96I GGNCC 6 cut(s) 239, 492, 647, 893, 932, 1043
SfaNI GCATC 2 cut(s) 124, 430
SfoI GGCGCC 1 cut(s) 337
SinI GGWCC 4 cut(s) 239, 647, 893, 932
SmlI CTYRAG 3 cut(s) 166, 421, 463
SmoI CTYRAG 3 cut(s) 166, 421, 463
Sse9I AATT 6 cut(s) 205, 302, 376, 557, 667, 779
SsiI CCGC 4 cut(s) 269, 766, 891, 1046
SspDI GGCGCC 1 cut(s) 335
SspMI CTAG 2 cut(s) 434, 1059
TaaI ACNGT 7 cut(s) 163, 197, 293, 390, 651, 842, 936
TaiI ACGT 3 cut(s) 645, 917, 966
TaqI TCGA 7 cut(s) 7, 50, 263, 564, 597, 729, 1015
TaqII GACCGA 1 cut(s) 699
TasI AATT 6 cut(s) 205, 302, 376, 557, 667, 779
TauI GCSGC 2 cut(s) 769, 1048
TfiI GAWTC 5 cut(s) 122, 353, 834, 906, 986
Tru1I TTAA 2 cut(s) 392, 761
Tru9I TTAA 2 cut(s) 392, 761
TscAI CASTG 1 cut(s) 903
TseFI GTSAC 1 cut(s) 1054
TseI GCWGC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 1054
TspDTI ATGAA 3 cut(s) 473, 660, 794
TspGWI ACGGA 1 cut(s) 1016
TspRI CASTG 1 cut(s) 903
VpaK11BI GGWCC 4 cut(s) 239, 647, 893, 932
XapI RAATTY 3 cut(s) 376, 557, 667
XceI RCATGY 2 cut(s) 736, 882
XmiI GTMKAC 1 cut(s) 33
XmnI GAANNNNTTC 1 cut(s) 357
XspI CTAG 2 cut(s) 434, 1059
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.