Rmu_sc0001880.1_g000011

GDSL esterase lipase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001880.1
OG0000193
Physical Location & Seq
Forward (+)
55287 .. 55750
464 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001880.1_g000011.1.cds

Sequence Viewer

Length: 384 bp
atgaaagaagctatgtcactggtgagatctcacaataaagaacttgctaaagtgctcctaaagttgaagagccagctccaaggattcaaatattccaatgccgatttctacacattcctaactgaaagaatgaataacccatcaaaatacggtttcagggaaggaaaagcggcatgttgtggctcgggtccatacagaggacatcagaactgtggaaggaagggaggtgtggaagagtatgaattatgtgacaatgttaccgaatatgttttttttgacgatcatccaactgaaagggtttaccatcaagtttccaagatatggtggaaccgtactccaaatgtcacagggctttacaatctgagatctctatttgaagtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

127

Amino Acids

14.77

Weight (kDa)

8.88

Isoelectric Point (pI)

35.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 321
AciI CCGC 1 cut(s) 170
AfaI GTAC 1 cut(s) 334
AfiI CCNNNNNNNGG 2 cut(s) 197, 321
AgsI TTSAA 3 cut(s) 67, 88, 377
AjuI GAANNNNNNNTTGG 2 cut(s) 89, 121
AluBI AGCT 2 cut(s) 11, 76
AluI AGCT 2 cut(s) 11, 76
Alw21I GWGCWC 1 cut(s) 57
Ama87I CYCGRG 1 cut(s) 184
AspS9I GGNCC 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 34
AvaI CYCGRG 1 cut(s) 184
AvaII GGWCC 1 cut(s) 188
Bbv12I GWGCWC 1 cut(s) 57
BccI CCATC 2 cut(s) 148, 312
BglII AGATCT 2 cut(s) 26, 365
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
Bme18I GGWCC 1 cut(s) 188
BmeT110I CYCGRG 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 2 cut(s) 189, 329
BsaJI CCNNGG 1 cut(s) 79
Bsc4I CCNNNNNNNGG 2 cut(s) 197, 321
Bse1I ACTGG 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 79
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 2 cut(s) 197, 321
BseMII CTCAG 1 cut(s) 353
BseNI ACTGG 1 cut(s) 24
BsiHKAI GWGCWC 1 cut(s) 57
BsiHKCI CYCGRG 1 cut(s) 184
BslI CCNNNNNNNGG 2 cut(s) 197, 321
BsoBI CYCGRG 1 cut(s) 184
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 3 cut(s) 26, 280, 365
BspACI CCGC 1 cut(s) 170
BspCNI CTCAG 1 cut(s) 354
BspLI GGNNCC 2 cut(s) 189, 329
BspQI GCTCTTC 1 cut(s) 62
BsrI ACTGG 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 79
BssMI GATC 3 cut(s) 26, 280, 365
BssT1I CCWWGG 1 cut(s) 79
Bst4CI ACNGT 3 cut(s) 152, 212, 332
Bst6I CTCTTC 2 cut(s) 62, 228
BstC8I GCNNGC 1 cut(s) 74
BstDEI CTNAG 1 cut(s) 362
BstF5I GGATG 1 cut(s) 283
BstKTI GATC 3 cut(s) 29, 283, 368
BstMBI GATC 3 cut(s) 26, 280, 365
BstNSI RCATGY 1 cut(s) 177
BstX2I RGATCY 2 cut(s) 26, 365
BstYI RGATCY 2 cut(s) 26, 365
BtsCI GGATG 1 cut(s) 283
BtsIMutI CAGTG 1 cut(s) 17
Cac8I GCNNGC 1 cut(s) 74
Cfr13I GGNCC 1 cut(s) 188
Csp6I GTAC 1 cut(s) 333
CviAII CATG 1 cut(s) 174
CviJI RGCY 5 cut(s) 11, 72, 76, 183, 352
CviKI_1 RGCY 5 cut(s) 11, 72, 76, 183, 352
CviQI GTAC 1 cut(s) 333
DdeI CTNAG 1 cut(s) 362
DpnI GATC 3 cut(s) 28, 282, 367
DpnII GATC 3 cut(s) 26, 280, 365
Eam1104I CTCTTC 2 cut(s) 62, 228
EarI CTCTTC 2 cut(s) 62, 228
Eco130I CCWWGG 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 188
Eco88I CYCGRG 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 79
FaeI CATG 1 cut(s) 177
FaiI YATR 7 cut(s) 14, 175, 193, 240, 247, 267, 322
FatI CATG 1 cut(s) 173
Fnu4HI GCNGC 1 cut(s) 171
FokI GGATG 1 cut(s) 270
Fsp4HI GCNGC 1 cut(s) 171
GluI GCNGC 1 cut(s) 171
Hin1II CATG 1 cut(s) 177
HinfI GANTC 1 cut(s) 84
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 2 cut(s) 207, 363
Hpy8I GTNNAC 1 cut(s) 301
HpyAV CCTTC 3 cut(s) 155, 210, 214
HpyCH4III ACNGT 3 cut(s) 152, 212, 332
HpyF3I CTNAG 1 cut(s) 362
Hsp92II CATG 1 cut(s) 177
Kzo9I GATC 3 cut(s) 26, 280, 365
LguI GCTCTTC 1 cut(s) 62
LmnI GCTCC 2 cut(s) 60, 81
LpnPI CCDG 4 cut(s) 5, 86, 142, 333
MaeIII GTNAC 4 cut(s) 15, 248, 256, 343
MalI GATC 3 cut(s) 28, 282, 367
MboI GATC 3 cut(s) 26, 280, 365
MboII GAAGA 2 cut(s) 79, 245
MflI RGATCY 2 cut(s) 26, 365
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 1 cut(s) 242
MmeI TCCRAC 1 cut(s) 311
MnlI CCTC 2 cut(s) 191, 218
NdeII GATC 3 cut(s) 26, 280, 365
NlaIII CATG 1 cut(s) 177
NlaIV GGNNCC 2 cut(s) 189, 329
NmuCI GTSAC 3 cut(s) 15, 248, 343
NspI RCATGY 1 cut(s) 177
PciSI GCTCTTC 1 cut(s) 62
PfeI GAWTC 1 cut(s) 84
PflMI CCANNNNNTGG 1 cut(s) 321
PkrI GCNGC 1 cut(s) 172
PspN4I GGNNCC 2 cut(s) 189, 329
PspPI GGNCC 1 cut(s) 188
PsuI RGATCY 2 cut(s) 26, 365
RsaI GTAC 1 cut(s) 334
RsaNI GTAC 1 cut(s) 333
SapI GCTCTTC 1 cut(s) 62
SatI GCNGC 1 cut(s) 171
Sau3AI GATC 3 cut(s) 26, 280, 365
Sau96I GGNCC 1 cut(s) 188
SduI GDGCHC 1 cut(s) 57
SetI ASST 3 cut(s) 13, 78, 229
SinI GGWCC 1 cut(s) 188
Sse9I AATT 1 cut(s) 242
SsiI CCGC 1 cut(s) 170
SspI AATATT 1 cut(s) 92
StyI CCWWGG 1 cut(s) 79
TaaI ACNGT 3 cut(s) 152, 212, 332
TasI AATT 1 cut(s) 242
TauI GCSGC 1 cut(s) 173
TfiI GAWTC 1 cut(s) 84
TscAI CASTG 1 cut(s) 24
TseFI GTSAC 3 cut(s) 15, 248, 343
Tsp45I GTSAC 3 cut(s) 15, 248, 343
TspDTI ATGAA 3 cut(s) 17, 146, 255
TspRI CASTG 1 cut(s) 24
Van91I CCANNNNNTGG 1 cut(s) 321
VpaK11BI GGWCC 1 cut(s) 188
XceI RCATGY 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.