Rw6G005580

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
8944029 .. 8945617
1589 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G005580.1

Sequence Viewer

Length: 702 bp
ATGCTAGCATTGTTATTCCAAGCAATTGCCTTGCTCACTTCTCTCTTCAAAGAGCCCACGCCTTTGTTTGTGTTTGGGGATTCACCATTTGATGCCGGAAAAAATAACTACATCAACACTACCAAGACTACTCAGGCCAACTACTGGACATATGGAGAAACTTATTTCGGGTATCCCACTGGGAGATACACCGATGGGTGTCAAATTCTAGACTTCATCCCCAAGACATTGCTTTCTAGTGCTGTCTACCTTTTCAGTATCAAAAGCAATGATTACTTCACCCCTCTGCAATTTAACATCAGCAAGGAATTCTCATACTCAGAAGAAGAATTCGTAGGGATGGTGAAATTTGGGTTACTAAGCTTGGGACCAATTGGTTGTCATCCAGCTTTGTTAGTATTTCAGCCAGGAAAAATAGGAACTTGCATGGAAGAACTCACAAAAATGGCACAAATACACAATAAGGCAATTTTGAAAGTCCTCCATGCCCTAGAGATCACTGAAAGGATTCAGATATTCGAACCAAAGAAGGTATGTTGTGGAAGTGGTCCATACAGAGCCTATAACCTATGTGACAATCCCATTGACTATGTGTTCTTCGATGGCAGTCTTTCTACAGAAAGAACTAACCAGCAATTTTCCCTGCTAATGTGGAGTGGAAATCCAATGTCACATGGCCTTCCAATGTTCAAGAACTATTAG

Protein Analysis

233

Amino Acids

26.35

Weight (kDa)

6.08

Isoelectric Point (pI)

29.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 144
AccI GTMKAC 1 cut(s) 246
AcsI RAATTY 4 cut(s) 204, 308, 329, 347
AfiI CCNNNNNNNGG 1 cut(s) 144
AgsI TTSAA 3 cut(s) 49, 475, 691
AjnI CCWGG 1 cut(s) 406
AluBI AGCT 2 cut(s) 363, 389
AluI AGCT 2 cut(s) 363, 389
AoxI GGCC 2 cut(s) 135, 676
ApoI RAATTY 4 cut(s) 204, 308, 329, 347
Asp700I GAANNNNTTC 1 cut(s) 507
AspS9I GGNCC 2 cut(s) 368, 548
AsuHPI GGTGA 3 cut(s) 75, 271, 355
AsuII TTCGAA 1 cut(s) 519
AsuNHI GCTAGC 1 cut(s) 4
AvaII GGWCC 2 cut(s) 368, 548
BanII GRGCYC 1 cut(s) 57
BccI CCATC 3 cut(s) 188, 334, 596
BciT130I CCWGG 1 cut(s) 408
BciVI GTATCC 1 cut(s) 183
BfaI CTAG 4 cut(s) 5, 209, 237, 491
BfmI CTRYAG 1 cut(s) 615
BfuI GTATCC 1 cut(s) 183
Bme1390I CCNGG 1 cut(s) 408
Bme18I GGWCC 2 cut(s) 368, 548
BmgT120I GGNCC 2 cut(s) 368, 548
BmiI GGNNCC 1 cut(s) 369
BmrFI CCNGG 1 cut(s) 408
BmrI ACTGGG 1 cut(s) 189
BmsI GCATC 1 cut(s) 82
BmtI GCTAGC 1 cut(s) 8
BmuI ACTGGG 1 cut(s) 189
Bpu14I TTCGAA 1 cut(s) 519
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse1I ACTGG 2 cut(s) 149, 184
Bse3DI GCAATG 2 cut(s) 227, 274
BseBI CCWGG 1 cut(s) 408
BseGI GGATG 3 cut(s) 216, 345, 382
BseLI CCNNNNNNNGG 1 cut(s) 144
BseMI GCAATG 2 cut(s) 227, 274
BseMII CTCAG 2 cut(s) 146, 333
BseNI ACTGG 2 cut(s) 149, 184
BshFI GGCC 2 cut(s) 137, 678
BsiSI CCGG 1 cut(s) 96
BslFI GGGAC 1 cut(s) 381
BslI CCNNNNNNNGG 1 cut(s) 144
BsmFI GGGAC 1 cut(s) 381
BsnI GGCC 2 cut(s) 137, 678
Bsp119I TTCGAA 1 cut(s) 519
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 1 cut(s) 495
BspANI GGCC 2 cut(s) 137, 678
BspCNI CTCAG 2 cut(s) 145, 332
BspLI GGNNCC 1 cut(s) 369
BspOI GCTAGC 1 cut(s) 8
BspT104I TTCGAA 1 cut(s) 519
BsrDI GCAATG 2 cut(s) 227, 274
BsrI ACTGG 2 cut(s) 149, 184
BssMI GATC 1 cut(s) 495
Bst2UI CCWGG 1 cut(s) 408
Bst6I CTCTTC 1 cut(s) 50
BstBI TTCGAA 1 cut(s) 519
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 3 cut(s) 132, 319, 359
BstF5I GGATG 3 cut(s) 216, 345, 382
BstKTI GATC 1 cut(s) 498
BstMBI GATC 1 cut(s) 495
BstNI CCWGG 1 cut(s) 408
BstSCI CCNGG 1 cut(s) 406
BstSFI CTRYAG 1 cut(s) 615
BsuI GTATCC 1 cut(s) 183
BsuRI GGCC 2 cut(s) 137, 678
BtsCI GGATG 3 cut(s) 216, 345, 382
BtsIMutI CAGTG 2 cut(s) 177, 498
Cac8I GCNNGC 1 cut(s) 6
Cfr13I GGNCC 2 cut(s) 368, 548
CviAII CATG 3 cut(s) 427, 485, 674
CviJI RGCY 7 cut(s) 55, 137, 363, 389, 406, 560, 678
CviKI_1 RGCY 7 cut(s) 55, 137, 363, 389, 406, 560, 678
DdeI CTNAG 3 cut(s) 132, 319, 359
DpnI GATC 1 cut(s) 497
DpnII GATC 1 cut(s) 495
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Eco24I GRGCYC 1 cut(s) 57
Eco47I GGWCC 2 cut(s) 368, 548
EcoRI GAATTC 2 cut(s) 308, 329
EcoRII CCWGG 1 cut(s) 406
EcoT38I GRGCYC 1 cut(s) 57
FaeI CATG 3 cut(s) 430, 488, 677
FaqI GGGAC 1 cut(s) 381
FatI CATG 3 cut(s) 426, 484, 673
FauNDI CATATG 1 cut(s) 151
FblI GTMKAC 1 cut(s) 246
FokI GGATG 3 cut(s) 203, 352, 369
FriOI GRGCYC 1 cut(s) 57
FspBI CTAG 4 cut(s) 5, 209, 237, 491
HaeIII GGCC 2 cut(s) 137, 678
HapII CCGG 1 cut(s) 96
Hin1II CATG 3 cut(s) 430, 488, 677
HindIII AAGCTT 1 cut(s) 361
HinfI GANTC 2 cut(s) 80, 508
HpaII CCGG 1 cut(s) 96
HphI GGTGA 3 cut(s) 75, 271, 355
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 2 cut(s) 322, 513
Hpy188III TCNNGA 2 cut(s) 209, 691
Hpy8I GTNNAC 1 cut(s) 247
HpyAV CCTTC 2 cut(s) 523, 689
HpyCH4V TGCA 2 cut(s) 289, 426
HpyF3I CTNAG 3 cut(s) 132, 319, 359
Hsp92II CATG 3 cut(s) 430, 488, 677
Kzo9I GATC 1 cut(s) 495
LpnPI CCDG 9 cut(s) 109, 119, 130, 165, 393, 399, 420, 644, 656
LweI GCATC 1 cut(s) 82
MaeI CTAG 4 cut(s) 5, 209, 237, 491
MaeIII GTNAC 3 cut(s) 354, 572, 669
MalI GATC 1 cut(s) 497
MboI GATC 1 cut(s) 495
MboII GAAGA 5 cut(s) 37, 335, 338, 443, 589
MfeI CAATTG 2 cut(s) 24, 372
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 9 cut(s) 24, 204, 290, 308, 329, 347, 372, 468, 635
MnlI CCTC 2 cut(s) 294, 491
MroXI GAANNNNTTC 1 cut(s) 507
MseI TTAA 1 cut(s) 294
MslI CAYNNNNRTG 1 cut(s) 443
MspI CCGG 1 cut(s) 96
MspR9I CCNGG 1 cut(s) 408
MunI CAATTG 2 cut(s) 24, 372
MvaI CCWGG 1 cut(s) 408
NdeI CATATG 1 cut(s) 151
NdeII GATC 1 cut(s) 495
NheI GCTAGC 1 cut(s) 4
NlaIII CATG 3 cut(s) 430, 488, 677
NlaIV GGNNCC 1 cut(s) 369
NmuCI GTSAC 2 cut(s) 572, 669
NspV TTCGAA 1 cut(s) 519
PdmI GAANNNNTTC 1 cut(s) 507
PfeI GAWTC 2 cut(s) 80, 508
PflMI CCANNNNNTGG 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 406
PspGI CCWGG 1 cut(s) 406
PspN4I GGNNCC 1 cut(s) 369
PspPI GGNCC 2 cut(s) 368, 548
RseI CAYNNNNRTG 1 cut(s) 443
SaqAI TTAA 1 cut(s) 294
Sau3AI GATC 1 cut(s) 495
Sau96I GGNCC 2 cut(s) 368, 548
ScrFI CCNGG 1 cut(s) 408
SduI GDGCHC 1 cut(s) 57
SetI ASST 5 cut(s) 252, 365, 391, 534, 570
SfaNI GCATC 1 cut(s) 82
SfcI CTRYAG 1 cut(s) 615
SfuI TTCGAA 1 cut(s) 519
SinI GGWCC 2 cut(s) 368, 548
SmiMI CAYNNNNRTG 1 cut(s) 443
Sse9I AATT 9 cut(s) 24, 204, 290, 308, 329, 347, 372, 468, 635
SspMI CTAG 4 cut(s) 5, 209, 237, 491
StyD4I CCNGG 1 cut(s) 406
TaqI TCGA 2 cut(s) 519, 600
TasI AATT 9 cut(s) 24, 204, 290, 308, 329, 347, 372, 468, 635
TfiI GAWTC 2 cut(s) 80, 508
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TscAI CASTG 2 cut(s) 184, 505
TseFI GTSAC 2 cut(s) 572, 669
Tsp45I GTSAC 2 cut(s) 572, 669
TspDTI ATGAA 1 cut(s) 205
TspRI CASTG 2 cut(s) 184, 505
Van91I CCANNNNNTGG 1 cut(s) 144
VpaK11BI GGWCC 2 cut(s) 368, 548
XapI RAATTY 4 cut(s) 204, 308, 329, 347
XbaI TCTAGA 1 cut(s) 208
XmiI GTMKAC 1 cut(s) 246
XmnI GAANNNNTTC 1 cut(s) 507
XspI CTAG 4 cut(s) 5, 209, 237, 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.