Rh7AG401800

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000193
Physical Location & Seq
Forward (+)
52929649 .. 52932787
3139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG401800.1

Sequence Viewer

Length: 828 bp
ATGATTCCACCATACTTACAACCGGGTTTTGACAACTATACTAATGGGGTGAACTTTGCATCTGCTGGGGCTGGCGCTCTAGCTGAAACTCATCAAGGATTTGCGTTGGACCTTAAAACTCAACTGGGTTATTTCAAGAATGTGGAGAAGCAGTTGAGGCACAGACTAGGTGAAGTAGAAGCTCACACATTGTTGTCCCAAGCTGTTTACTTGATTGCCATCGGAAGCAATGATTACGTTGCATTCATAACGAATTCAAGTTCGTTCGAGTCTCGCTCACATGAAGAATATGTTGGCATGGTGACAGGAAACATTACAAATGTGATCAAAGAAATATACAAGAAAGGAGGAAGAAAATTTGGGATTAAAGGCATAGAGAATTTGGGTTGTATCCCGGGCTTGAGAACAGTTAAACCAGGAAACACAAGCACCTGTAATGAAGAAGTAAATGCAATTTCAAAACTCCACAATAGAGTACTTGCTAAAGTCCTCGAGGAGCTGAAAGGACAGCTCCAAGACTTCATATACTCGAATCCAAATTTCTACTCTTACGCCAATGACGTAGTTAATAATCCATCAAAACATGGTTTCAAGGAAGGAAAGATGGCATGCTGTGGCTCTGGTCCATACAGAGGAATTAGTAGCTGCGGAGGGAAGCGAGGTGGTATGACTGAGTATCAGTTATGTGACAATGTTACTGACTATGTCTACTTTGATTCCGGCCATCCCACAGAAAGGTATAACCAGAAACTTTCCAAGTTATGGTGGAGCCATACTCCCGATGTCACAGCACGTTACATCAATTTGAAAGAGCTATTTGAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

275

Amino Acids

30.58

Weight (kDa)

8.11

Isoelectric Point (pI)

26.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 8 - 254 3.6e-17 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 491
AccB7I CCANNNNNTGG 1 cut(s) 762
AccI GTMKAC 1 cut(s) 708
AciI CCGC 1 cut(s) 648
AcoI YGGCCR 1 cut(s) 721
AcsI RAATTY 4 cut(s) 253, 356, 379, 538
AfaI GTAC 1 cut(s) 477
AfiI CCNNNNNNNGG 3 cut(s) 632, 735, 762
AgsI TTSAA 6 cut(s) 136, 258, 459, 592, 808, 821
AjnI CCWGG 1 cut(s) 415
AjuI GAANNNNNNNTTGG 2 cut(s) 276, 308
AluBI AGCT 7 cut(s) 83, 182, 203, 499, 511, 645, 814
AluI AGCT 7 cut(s) 83, 182, 203, 499, 511, 645, 814
Alw26I GTCTC 1 cut(s) 276
Ama87I CYCGRG 2 cut(s) 394, 491
AoxI GGCC 1 cut(s) 721
ApeKI GCWGC 1 cut(s) 645
ApoI RAATTY 4 cut(s) 253, 356, 379, 538
AspLEI GCGC 1 cut(s) 77
AspS9I GGNCC 2 cut(s) 109, 623
AsuC2I CCSGG 3 cut(s) 24, 395, 396
AsuHPI GGTGA 3 cut(s) 61, 182, 313
AvaI CYCGRG 2 cut(s) 394, 491
AvaII GGWCC 2 cut(s) 109, 623
BbvI GCAGC 1 cut(s) 632
BccI CCATC 4 cut(s) 227, 583, 598, 732
BciT130I CCWGG 1 cut(s) 417
BciVI GTATCC 1 cut(s) 401
BclI TGATCA 1 cut(s) 324
BcnI CCSGG 3 cut(s) 24, 395, 396
BcoDI GTCTC 1 cut(s) 276
BfaI CTAG 2 cut(s) 80, 167
BfoI RGCGCY 1 cut(s) 78
BfuI GTATCC 1 cut(s) 401
BisI GCNGC 1 cut(s) 646
BlsI GCNGC 1 cut(s) 647
BmcAI AGTACT 1 cut(s) 477
Bme1390I CCNGG 4 cut(s) 24, 395, 396, 417
Bme18I GGWCC 2 cut(s) 109, 623
BmeT110I CYCGRG 2 cut(s) 394, 491
BmgT120I GGNCC 2 cut(s) 109, 623
BmiI GGNNCC 1 cut(s) 770
BmrFI CCNGG 4 cut(s) 24, 395, 396, 417
BmrI ACTGGG 1 cut(s) 134
BmsI GCATC 1 cut(s) 68
BmuI ACTGGG 1 cut(s) 134
BplI GAGNNNNNCTC 4 cut(s) 260, 292, 760, 792
BpuEI CTTGAG 1 cut(s) 421
BpuMI CCSGG 3 cut(s) 24, 395, 396
BsaBI GATNNNNATC 1 cut(s) 218
BsaJI CCNNGG 1 cut(s) 394
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 3 cut(s) 632, 735, 762
Bse1I ACTGG 1 cut(s) 129
Bse3DI GCAATG 1 cut(s) 235
Bse8I GATNNNNATC 1 cut(s) 218
BseBI CCWGG 1 cut(s) 417
BseDI CCNNGG 1 cut(s) 394
BseGI GGATG 1 cut(s) 724
BseJI GATNNNNATC 1 cut(s) 218
BseLI CCNNNNNNNGG 3 cut(s) 632, 735, 762
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 1 cut(s) 663
BseNI ACTGG 1 cut(s) 129
BseRI GAGGAG 1 cut(s) 509
BseXI GCAGC 1 cut(s) 632
BseYI CCCAGC 1 cut(s) 65
BshFI GGCC 1 cut(s) 723
BsiHKCI CYCGRG 2 cut(s) 394, 491
BsiSI CCGG 3 cut(s) 23, 395, 720
BslFI GGGAC 1 cut(s) 181
BslI CCNNNNNNNGG 3 cut(s) 632, 735, 762
BsmAI GTCTC 1 cut(s) 276
BsmFI GGGAC 1 cut(s) 181
BsmI GAATGC 1 cut(s) 242
BsnI GGCC 1 cut(s) 723
BsoBI CYCGRG 2 cut(s) 394, 491
Bsp143I GATC 1 cut(s) 324
BspACI CCGC 1 cut(s) 648
BspANI GGCC 1 cut(s) 723
BspCNI CTCAG 1 cut(s) 664
BspLI GGNNCC 1 cut(s) 770
BsrDI GCAATG 1 cut(s) 235
BsrI ACTGG 1 cut(s) 129
BssECI CCNNGG 1 cut(s) 394
BssMI GATC 1 cut(s) 324
Bst2UI CCWGG 1 cut(s) 417
Bst4CI ACNGT 1 cut(s) 409
BstC8I GCNNGC 2 cut(s) 73, 610
BstDEI CTNAG 1 cut(s) 672
BstF5I GGATG 1 cut(s) 724
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 1 cut(s) 327
BstMAI GTCTC 1 cut(s) 276
BstMBI GATC 1 cut(s) 324
BstMWI GCNNNNNNNGC 1 cut(s) 157
BstNI CCWGG 1 cut(s) 417
BstNSI RCATGY 1 cut(s) 612
BstSCI CCNGG 4 cut(s) 22, 393, 394, 415
BstV1I GCAGC 1 cut(s) 632
BsuI GTATCC 1 cut(s) 401
BsuRI GGCC 1 cut(s) 723
BtsCI GGATG 1 cut(s) 724
Cac8I GCNNGC 2 cut(s) 73, 610
CfoI GCGC 1 cut(s) 77
Cfr13I GGNCC 2 cut(s) 109, 623
Cfr9I CCCGGG 1 cut(s) 394
Csp6I GTAC 1 cut(s) 476
CviAII CATG 4 cut(s) 281, 298, 584, 609
CviQI GTAC 1 cut(s) 476
DdeI CTNAG 1 cut(s) 672
DpnI GATC 1 cut(s) 326
DpnII GATC 1 cut(s) 324
EaeI YGGCCR 1 cut(s) 721
Eco47I GGWCC 2 cut(s) 109, 623
Eco88I CYCGRG 2 cut(s) 394, 491
EcoRI GAATTC 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 415
FaeI CATG 4 cut(s) 284, 301, 587, 612
FaqI GGGAC 1 cut(s) 181
FatI CATG 4 cut(s) 280, 297, 583, 608
FbaI TGATCA 1 cut(s) 324
FblI GTMKAC 1 cut(s) 708
Fnu4HI GCNGC 1 cut(s) 646
FokI GGATG 1 cut(s) 711
Fsp4HI GCNGC 1 cut(s) 646
FspBI CTAG 2 cut(s) 80, 167
GlaI GCGC 1 cut(s) 76
GluI GCNGC 1 cut(s) 646
GsaI CCCAGC 1 cut(s) 69
HaeII RGCGCY 1 cut(s) 78
HaeIII GGCC 1 cut(s) 723
HapII CCGG 3 cut(s) 23, 395, 720
HhaI GCGC 1 cut(s) 77
Hin1II CATG 4 cut(s) 284, 301, 587, 612
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HinfI GANTC 4 cut(s) 4, 269, 532, 716
HpaII CCGG 3 cut(s) 23, 395, 720
HphI GGTGA 3 cut(s) 61, 182, 313
Hpy166II GTNNAC 3 cut(s) 52, 208, 709
Hpy188I TCNGA 1 cut(s) 224
Hpy188III TCNNGA 2 cut(s) 136, 779
Hpy8I GTNNAC 3 cut(s) 52, 208, 709
HpyAV CCTTC 1 cut(s) 590
HpyCH4III ACNGT 1 cut(s) 409
HpyCH4IV ACGT 3 cut(s) 237, 561, 793
HpyCH4V TGCA 3 cut(s) 59, 242, 452
HpyF10VI GCNNNNNNNGC 1 cut(s) 157
HpyF3I CTNAG 1 cut(s) 672
HpySE526I ACGT 3 cut(s) 237, 561, 793
Hsp92II CATG 4 cut(s) 284, 301, 587, 612
HspAI GCGC 1 cut(s) 75
Ksp22I TGATCA 1 cut(s) 324
Kzo9I GATC 1 cut(s) 324
LmnI GCTCC 3 cut(s) 496, 516, 768
Lsp1109I GCAGC 1 cut(s) 632
LweI GCATC 1 cut(s) 68
MaeI CTAG 2 cut(s) 80, 167
MaeII ACGT 3 cut(s) 237, 561, 793
MaeIII GTNAC 5 cut(s) 301, 686, 694, 784, 794
MalI GATC 1 cut(s) 326
MboI GATC 1 cut(s) 324
MboII GAAGA 3 cut(s) 296, 363, 452
MluCI AATT 7 cut(s) 253, 356, 379, 453, 538, 636, 802
MlyI GAGTC 1 cut(s) 278
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 7 cut(s) 150, 341, 487, 500, 626, 644, 653
MseI TTAA 4 cut(s) 114, 366, 411, 567
MspI CCGG 3 cut(s) 23, 395, 720
MspR9I CCNGG 4 cut(s) 24, 395, 396, 417
Mva1269I GAATGC 1 cut(s) 242
MvaI CCWGG 1 cut(s) 417
MwoI GCNNNNNNNGC 1 cut(s) 157
NciI CCSGG 3 cut(s) 24, 395, 396
NdeII GATC 1 cut(s) 324
NlaIII CATG 4 cut(s) 284, 301, 587, 612
NlaIV GGNNCC 1 cut(s) 770
NmuCI GTSAC 3 cut(s) 301, 686, 784
NspI RCATGY 1 cut(s) 612
PaeI GCATGC 1 cut(s) 612
PaeR7I CTCGAG 1 cut(s) 491
PcsI WCGNNNNNNNCGW 1 cut(s) 558
PctI GAATGC 1 cut(s) 242
PfeI GAWTC 3 cut(s) 4, 532, 716
PflFI GACNNNGTC 1 cut(s) 704
PflMI CCANNNNNTGG 1 cut(s) 762
PkrI GCNGC 1 cut(s) 647
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
Psp6I CCWGG 1 cut(s) 415
PspFI CCCAGC 1 cut(s) 65
PspGI CCWGG 1 cut(s) 415
PspN4I GGNNCC 1 cut(s) 770
PspPI GGNCC 2 cut(s) 109, 623
PspXI VCTCGAGB 1 cut(s) 491
PsyI GACNNNGTC 1 cut(s) 704
RsaI GTAC 1 cut(s) 477
RsaNI GTAC 1 cut(s) 476
SaqAI TTAA 4 cut(s) 114, 366, 411, 567
SatI GCNGC 1 cut(s) 646
Sau3AI GATC 1 cut(s) 324
Sau96I GGNCC 2 cut(s) 109, 623
ScaI AGTACT 1 cut(s) 477
SchI GAGTC 1 cut(s) 278
ScrFI CCNGG 4 cut(s) 24, 395, 396, 417
SfaNI GCATC 1 cut(s) 68
Sfr274I CTCGAG 1 cut(s) 491
SinI GGWCC 2 cut(s) 109, 623
SlaI CTCGAG 1 cut(s) 491
SmaI CCCGGG 1 cut(s) 396
SmlI CTYRAG 2 cut(s) 400, 491
SmoI CTYRAG 2 cut(s) 400, 491
SphI GCATGC 1 cut(s) 612
Sse9I AATT 7 cut(s) 253, 356, 379, 453, 538, 636, 802
SsiI CCGC 1 cut(s) 648
SspMI CTAG 2 cut(s) 80, 167
StyD4I CCNGG 4 cut(s) 22, 393, 394, 415
TaaI ACNGT 1 cut(s) 409
TaiI ACGT 3 cut(s) 240, 564, 796
TaqI TCGA 3 cut(s) 267, 492, 530
TasI AATT 7 cut(s) 253, 356, 379, 453, 538, 636, 802
TatI WGTACW 1 cut(s) 475
TfiI GAWTC 3 cut(s) 4, 532, 716
Tru1I TTAA 4 cut(s) 114, 366, 411, 567
Tru9I TTAA 4 cut(s) 114, 366, 411, 567
TseFI GTSAC 3 cut(s) 301, 686, 784
TseI GCWGC 1 cut(s) 645
Tsp45I GTSAC 3 cut(s) 301, 686, 784
TspDTI ATGAA 4 cut(s) 235, 297, 453, 511
TspMI CCCGGG 1 cut(s) 394
Tth111I GACNNNGTC 1 cut(s) 704
Van91I CCANNNNNTGG 1 cut(s) 762
VpaK11BI GGWCC 2 cut(s) 109, 623
XapI RAATTY 4 cut(s) 253, 356, 379, 538
XceI RCATGY 1 cut(s) 612
XhoI CTCGAG 1 cut(s) 491
XmaI CCCGGG 1 cut(s) 394
XmiI GTMKAC 1 cut(s) 708
XspI CTAG 2 cut(s) 80, 167
ZrmI AGTACT 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.