Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000193

Physical Location & Seq

Genomic Coordinates Forward (+)

20143144 .. 20144974

Gene Structure 1831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G53940.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGAAAACTCTCGATCAACTTTGATCATCTTCTTTGCTTACACAACAATCATATTAATCGGTTCTATCAACTGTAGAGACAACAACAACAACAATCTGGTAACAAACCAATCCGCTTTGTTCGTGTTTGGCGATTCTGTGTTCGATGCCGGAAACAACAATTACATCGATACTCTTCCCAGTTTCCGGTCTAATTACTGGCCATACGGCCAAACCACTTTCAAATTCCCTACTGGAAGAGTCTCCGACGGTCGTACAATTCCTGATTTTATTGCGGAGTACGCATGGTTACCGTTGATCCCAGCGTATCTACAACCAAGTAACGGTAAAAATCAATTTCCCTACGGAGTTAGTTTTGCTTCCGCCGGTGCCGGAGCTTTAGTCGGAACCTTTCCCGGAATGGTGATAAATTTGAAATCACAATTAAACAATTTTAAGAAGGTTGAAAAATTGTTGAGATCTACGTTAGGAGAAGCACAAGGGAAGATGGTTATTTCAAGAGCAGTTTATCTGTTTCATATCGGAGTCAACGATTATCAATATCCATTCTCTACAAACTCTTCCATTTTCCAATCCAGTCCTCAAGAGATATACGTCGATTTTGTTGTCGGTAACACAACGGCCGTGATCAAGGAAGTGTATAAAATTGGAGGAAGGAAGTTTGGATTCTTGAACATGGGAGCGTATGATTGTGCACCGGCCTCATTGATTATAGACCAAACAAAGATAGGAACTTGTTTTAAGCCGGTCACCGAGCTGATCAATCTGCACAACGAGAAGCTTGAGAGTGGTTTGAGGCGGCTAGAGCGTGAACTATCGGGATTCAAATACGCTCTTCATGACTATCACACTTCCCTATCCGTACGAATGAACAATCCTTCCAAATACGGTAACAAAACCTTTTGCAATTTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0006629 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009817 GO:0009861 GO:0009866 GO:0009871 GO:0009873 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0010928 GO:0010930 GO:0014070 GO:0016298 GO:0016787 GO:0016788 GO:0023051 GO:0023052 GO:0023057 GO:0031347 GO:0031349 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044238 GO:0044421 GO:0045087 GO:0045088 GO:0045089 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080134 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

305

Amino Acids

34.13

Weight (kDa)

9.01

Isoelectric Point (pI)

32.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	40 - 356	1.9e-25	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca	FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica	MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica	Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis	pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis	RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata	RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora	Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa	Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha	Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana	Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	368
AciI	CCGC	4 cut(s)	114, 275, 363, 799
AclWI	GGATC	1 cut(s)	292
AcoI	YGGCCR	3 cut(s)	200, 208, 621
AcsI	RAATTY	2 cut(s)	224, 409
AfaI	GTAC	3 cut(s)	256, 281, 864
AfiI	CCNNNNNNNGG	2 cut(s)	186, 323
AgsI	TTSAA	6 cut(s)	223, 415, 446, 498, 673, 826
AloI	GAACNNNNNNTCC	2 cut(s)	863, 895
AluBI	AGCT	3 cut(s)	377, 757, 781
AluI	AGCT	3 cut(s)	377, 757, 781
Alw21I	GWGCWC	1 cut(s)	697
Alw26I	GTCTC	2 cut(s)	72, 247
Alw44I	GTGCAC	1 cut(s)	693
AlwI	GGATC	1 cut(s)	292
AoxI	GGCC	4 cut(s)	200, 208, 621, 699
ApaLI	GTGCAC	1 cut(s)	693
ApoI	RAATTY	2 cut(s)	224, 409
AseI	ATTAAT	1 cut(s)	56
AsuC2I	CCSGG	1 cut(s)	396
AsuHPI	GGTGA	2 cut(s)	415, 742
BaeGI	GKGCMC	1 cut(s)	697
BalI	TGGCCA	1 cut(s)	202
BanI	GGYRCC	1 cut(s)	368
Bbv12I	GWGCWC	1 cut(s)	697
BccI	CCATC	1 cut(s)	481
BceAI	ACGGC	3 cut(s)	223, 608, 636
BclI	TGATCA	3 cut(s)	24, 627, 759
BcnI	CCSGG	1 cut(s)	396
BcoDI	GTCTC	2 cut(s)	72, 247
BfaI	CTAG	1 cut(s)	803
BfmI	CTRYAG	1 cut(s)	73
BglII	AGATCT	1 cut(s)	458
BisI	GCNGC	1 cut(s)	800
BlsI	GCNGC	1 cut(s)	801
Bme1390I	CCNGG	1 cut(s)	396
BmiI	GGNNCC	2 cut(s)	370, 388
BmrFI	CCNGG	1 cut(s)	396
BmrI	ACTGGG	1 cut(s)	174
BmsI	GCATC	1 cut(s)	136
BmuI	ACTGGG	1 cut(s)	174
BpuEI	CTTGAG	2 cut(s)	567, 803
BpuMI	CCSGG	1 cut(s)	396
Bsa29I	ATCGAT	1 cut(s)	168
BsaWI	WCCGGW	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	366, 396
Bsc4I	CCNNNNNNNGG	2 cut(s)	186, 323
Bse118I	RCCGGY	3 cut(s)	365, 697, 745
Bse1I	ACTGG	4 cut(s)	180, 203, 238, 576
BseCI	ATCGAT	1 cut(s)	168
BseLI	CCNNNNNNNGG	2 cut(s)	186, 323
BseNI	ACTGG	4 cut(s)	180, 203, 238, 576
BseSI	GKGCMC	1 cut(s)	697
BseX3I	CGGCCG	1 cut(s)	621
BseYI	CCCAGC	1 cut(s)	301
BsgI	GTGCAG	1 cut(s)	752
Bsh1285I	CGRYCG	2 cut(s)	253, 624
BshFI	GGCC	4 cut(s)	202, 210, 623, 701
BshNI	GGYRCC	1 cut(s)	368
BshVI	ATCGAT	1 cut(s)	168
BsiEI	CGRYCG	2 cut(s)	253, 624
BsiHKAI	GWGCWC	1 cut(s)	697
BsiSI	CCGG	7 cut(s)	150, 187, 366, 372, 396, 698, 746
BsiWI	CGTACG	1 cut(s)	862
BslI	CCNNNNNNNGG	2 cut(s)	186, 323
BsmAI	GTCTC	2 cut(s)	72, 247
BsnI	GGCC	4 cut(s)	202, 210, 623, 701
Bsp1286I	GDGCHC	1 cut(s)	697
Bsp143I	GATC	6 cut(s)	14, 24, 297, 458, 627, 759
BspACI	CCGC	4 cut(s)	114, 275, 363, 799
BspANI	GGCC	4 cut(s)	202, 210, 623, 701
BspDI	ATCGAT	1 cut(s)	168
BspHI	TCATGA	1 cut(s)	838
BspLI	GGNNCC	2 cut(s)	370, 388
BspPI	GGATC	1 cut(s)	292
BspQI	GCTCTTC	1 cut(s)	840
BspT107I	GGYRCC	1 cut(s)	368
BsrFI	RCCGGY	3 cut(s)	365, 697, 745
BsrI	ACTGG	4 cut(s)	180, 203, 238, 576
BssAI	RCCGGY	3 cut(s)	365, 697, 745
BssMI	GATC	6 cut(s)	14, 24, 297, 458, 627, 759
Bst4CI	ACNGT	5 cut(s)	74, 251, 294, 326, 890
Bst6I	CTCTTC	4 cut(s)	180, 232, 565, 840
BstEII	GGTNACC	2 cut(s)	288, 748
BstKTI	GATC	6 cut(s)	17, 27, 300, 461, 630, 762
BstMAI	GTCTC	2 cut(s)	72, 247
BstMBI	GATC	6 cut(s)	14, 24, 297, 458, 627, 759
BstMCI	CGRYCG	2 cut(s)	253, 624
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 805
BstPI	GGTNACC	2 cut(s)	288, 748
BstSCI	CCNGG	1 cut(s)	394
BstSFI	CTRYAG	1 cut(s)	73
BstSLI	GKGCMC	1 cut(s)	697
BstX2I	RGATCY	1 cut(s)	458
BstYI	RGATCY	1 cut(s)	458
BstZI	CGGCCG	1 cut(s)	621
Bsu15I	ATCGAT	1 cut(s)	168
BsuRI	GGCC	4 cut(s)	202, 210, 623, 701
BsuTUI	ATCGAT	1 cut(s)	168
CciI	TCATGA	1 cut(s)	838
Cfr10I	RCCGGY	3 cut(s)	365, 697, 745
ClaI	ATCGAT	1 cut(s)	168
Csp6I	GTAC	3 cut(s)	255, 280, 863
CviAII	CATG	3 cut(s)	285, 676, 839
CviJI	RGCY	9 cut(s)	202, 210, 377, 623, 701, 745, 757, 781, 802
CviKI_1	RGCY	9 cut(s)	202, 210, 377, 623, 701, 745, 757, 781, 802
CviQI	GTAC	3 cut(s)	255, 280, 863
DpnI	GATC	6 cut(s)	16, 26, 299, 460, 629, 761
DpnII	GATC	6 cut(s)	14, 24, 297, 458, 627, 759
EaeI	YGGCCR	3 cut(s)	200, 208, 621
EagI	CGGCCG	1 cut(s)	621
Eam1104I	CTCTTC	4 cut(s)	180, 232, 565, 840
EarI	CTCTTC	4 cut(s)	180, 232, 565, 840
EciI	GGCGGA	1 cut(s)	352
EclXI	CGGCCG	1 cut(s)	621
Eco52I	CGGCCG	1 cut(s)	621
Eco91I	GGTNACC	2 cut(s)	288, 748
EcoO65I	GGTNACC	2 cut(s)	288, 748
FaeI	CATG	3 cut(s)	288, 679, 842
FatI	CATG	3 cut(s)	284, 675, 838
FbaI	TGATCA	3 cut(s)	24, 627, 759
Fnu4HI	GCNGC	1 cut(s)	800
Fsp4HI	GCNGC	1 cut(s)	800
FspBI	CTAG	1 cut(s)	803
GluI	GCNGC	1 cut(s)	800
GsaI	CCCAGC	1 cut(s)	305
HaeIII	GGCC	4 cut(s)	202, 210, 623, 701
HapII	CCGG	7 cut(s)	150, 187, 366, 372, 396, 698, 746
Hin1II	CATG	3 cut(s)	288, 679, 842
HincII	GTYRAC	1 cut(s)	529
HindII	GTYRAC	1 cut(s)	529
HindIII	AAGCTT	1 cut(s)	779
HinfI	GANTC	5 cut(s)	134, 240, 525, 666, 822
HpaII	CCGG	7 cut(s)	150, 187, 366, 372, 396, 698, 746
HphI	GGTGA	2 cut(s)	415, 742
Hpy166II	GTNNAC	3 cut(s)	529, 695, 812
Hpy188I	TCNGA	3 cut(s)	247, 386, 524
Hpy188III	TCNNGA	7 cut(s)	12, 263, 498, 584, 670, 819, 839
Hpy8I	GTNNAC	3 cut(s)	529, 695, 812
Hpy99I	CGWCG	2 cut(s)	251, 599
HpyAV	CCTTC	3 cut(s)	433, 648, 888
HpyCH4III	ACNGT	5 cut(s)	74, 251, 294, 326, 890
HpyCH4IV	ACGT	2 cut(s)	464, 594
HpyCH4V	TGCA	3 cut(s)	695, 769, 906
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 805
HpySE526I	ACGT	2 cut(s)	464, 594
Hsp92II	CATG	3 cut(s)	288, 679, 842
Ksp22I	TGATCA	3 cut(s)	24, 627, 759
Kzo9I	GATC	6 cut(s)	14, 24, 297, 458, 627, 759
LguI	GCTCTTC	1 cut(s)	840
LmnI	GCTCC	2 cut(s)	374, 680
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	1 cut(s)	803
MaeII	ACGT	2 cut(s)	464, 594
MaeIII	GTNAC	6 cut(s)	100, 288, 320, 611, 748, 890
MalI	GATC	6 cut(s)	16, 26, 299, 460, 629, 761
MboI	GATC	6 cut(s)	14, 24, 297, 458, 627, 759
MboII	GAAGA	6 cut(s)	22, 167, 249, 496, 552, 827
MflI	RGATCY	1 cut(s)	458
MhlI	GDGCHC	1 cut(s)	697
MlsI	TGGCCA	1 cut(s)	202
MluNI	TGGCCA	1 cut(s)	202
MlyI	GAGTC	2 cut(s)	249, 534
MmeI	TCCRAC	2 cut(s)	270, 364
MnlI	CCTC	4 cut(s)	591, 644, 712, 789
Mox20I	TGGCCA	1 cut(s)	202
MscI	TGGCCA	1 cut(s)	202
MseI	TTAA	4 cut(s)	56, 425, 435, 741
Msp20I	TGGCCA	1 cut(s)	202
MspI	CCGG	7 cut(s)	150, 187, 366, 372, 396, 698, 746
MspR9I	CCNGG	1 cut(s)	396
MwoI	GCNNNNNNNGC	2 cut(s)	281, 805
NciI	CCSGG	1 cut(s)	396
NdeII	GATC	6 cut(s)	14, 24, 297, 458, 627, 759
NlaIII	CATG	3 cut(s)	288, 679, 842
NlaIV	GGNNCC	2 cut(s)	370, 388
NmuCI	GTSAC	1 cut(s)	748
PagI	TCATGA	1 cut(s)	838
PciSI	GCTCTTC	1 cut(s)	840
PcsI	WCGNNNNNNNCGW	2 cut(s)	129, 528
PfeI	GAWTC	3 cut(s)	134, 666, 822
Pfl23II	CGTACG	1 cut(s)	862
PfoI	TCCNGGA	1 cut(s)	394
PkrI	GCNGC	1 cut(s)	801
PleI	GAGTC	2 cut(s)	248, 533
PpsI	GAGTC	2 cut(s)	248, 533
PshBI	ATTAAT	1 cut(s)	56
PspEI	GGTNACC	2 cut(s)	288, 748
PspFI	CCCAGC	1 cut(s)	301
PspLI	CGTACG	1 cut(s)	862
PspN4I	GGNNCC	2 cut(s)	370, 388
PsuI	RGATCY	1 cut(s)	458
RsaI	GTAC	3 cut(s)	256, 281, 864
RsaNI	GTAC	3 cut(s)	255, 280, 863
SapI	GCTCTTC	1 cut(s)	840
SaqAI	TTAA	4 cut(s)	56, 425, 435, 741
SatI	GCNGC	1 cut(s)	800
Sau3AI	GATC	6 cut(s)	14, 24, 297, 458, 627, 759
SchI	GAGTC	2 cut(s)	249, 534
ScrFI	CCNGG	1 cut(s)	396
SduI	GDGCHC	1 cut(s)	697
SetI	ASST	8 cut(s)	379, 392, 444, 467, 597, 759, 783, 902
SfaNI	GCATC	1 cut(s)	136
SfcI	CTRYAG	1 cut(s)	73
SgrAI	CRCCGGYG	1 cut(s)	365
SmlI	CTYRAG	2 cut(s)	582, 782
SmoI	CTYRAG	2 cut(s)	582, 782
SsiI	CCGC	4 cut(s)	114, 275, 363, 799
SspMI	CTAG	1 cut(s)	803
StyD4I	CCNGG	1 cut(s)	394
TaaI	ACNGT	5 cut(s)	74, 251, 294, 326, 890
TaiI	ACGT	2 cut(s)	467, 597
TaqI	TCGA	4 cut(s)	13, 144, 168, 597
TauI	GCSGC	1 cut(s)	802
TfiI	GAWTC	3 cut(s)	134, 666, 822
Tru1I	TTAA	4 cut(s)	56, 425, 435, 741
Tru9I	TTAA	4 cut(s)	56, 425, 435, 741
TseFI	GTSAC	1 cut(s)	748
Tsp45I	GTSAC	1 cut(s)	748
TspDTI	ATGAA	3 cut(s)	506, 827, 884
TspGWI	ACGGA	2 cut(s)	360, 850
VneI	GTGCAC	1 cut(s)	693
VspI	ATTAAT	1 cut(s)	56
XapI	RAATTY	2 cut(s)	224, 409
XspI	CTAG	1 cut(s)	803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.