Rroxscaffold_2G00113160

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000193
Physical Location & Seq
Forward (+)
38693745 .. 38695848
2104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00113160.1

Sequence Viewer

Length: 702 bp
ATGGCAACTTCTTCAAGATTTCAAGTATATGTCCTGGCTTTTTGTGCAACCCTTCTTATTCAAAGTGGCTGTTATGGCCATTCTGTGCATCAGAGAAAACATGCAGCCTTGTTCATCTTCGGGGATTCACTATTTGATGTTGGAAATAATAACTACATAAACACTTCCACTAACTTTCAAGCAAATTTCTTCCCATATGGGGAAACCTTCTTCGGCCACCCGACTGGTAGGGTCTCCGATGGTCGTCTAATGCCAGATATCGTTGGTAAGATTGTTGAAATATACAAGAAAGGAGGAAGAAAATTTGGGATTGCAGGCATGGAGCCTTTGGGTTGTACCCCGGGCATGAGAACAGATAAACCAGGAAACACAAGCACCTGTAAAGAAGAAGTAAATGCAATTTCAAAACTCCACAATAGAGTACTTGCTAAAGTCCTCCTGAAGCTGAAAGGACAGCTCGAAGATTTCATATACTCGAATCCAAATTTCTACTCTTACCTAAATGACATAGTTCATAATCCATCAAAACATGGTTTCAAGGAAGGAAAGATGGCATGCTGTGGCTCTGGTCCATACAGAGGAATTATGAGCTGCGGAGGGAAGCGAGGTGTGACCGAGTATCAGTTATGTGACAATGTTACTGACTATGTCTTTTTTTTATTCTGGCCATGCAACGGAAAGCGTATCCCAGAAAGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

233

Amino Acids

25.95

Weight (kDa)

9.01

Isoelectric Point (pI)

22.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 92 - 190 2.1e-06 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 594
AcoI YGGCCR 3 cut(s) 76, 214, 665
AcsI RAATTY 3 cut(s) 184, 302, 484
AcuI CTGAAG 1 cut(s) 461
AfaI GTAC 2 cut(s) 337, 423
AfiI CCNNNNNNNGG 3 cut(s) 199, 578, 674
AgsI TTSAA 7 cut(s) 15, 23, 62, 179, 278, 405, 538
AjnI CCWGG 2 cut(s) 33, 361
AluBI AGCT 3 cut(s) 445, 457, 591
AluI AGCT 3 cut(s) 445, 457, 591
Alw26I GTCTC 1 cut(s) 238
Ama87I CYCGRG 1 cut(s) 340
AoxI GGCC 3 cut(s) 76, 214, 665
ApeKI GCWGC 2 cut(s) 104, 591
ApoI RAATTY 3 cut(s) 184, 302, 484
AspS9I GGNCC 1 cut(s) 569
AsuC2I CCSGG 2 cut(s) 341, 342
AvaI CYCGRG 1 cut(s) 340
AvaII GGWCC 1 cut(s) 569
BalI TGGCCA 2 cut(s) 78, 667
BbvI GCAGC 2 cut(s) 116, 578
BccI CCATC 3 cut(s) 233, 529, 544
BciT130I CCWGG 2 cut(s) 35, 363
BciVI GTATCC 1 cut(s) 695
BcnI CCSGG 2 cut(s) 341, 342
BcoDI GTCTC 1 cut(s) 238
BfuI GTATCC 1 cut(s) 695
BisI GCNGC 2 cut(s) 105, 592
BlsI GCNGC 2 cut(s) 106, 593
BmcAI AGTACT 1 cut(s) 423
Bme1390I CCNGG 4 cut(s) 35, 341, 342, 363
Bme18I GGWCC 1 cut(s) 569
BmeT110I CYCGRG 1 cut(s) 340
BmgT120I GGNCC 1 cut(s) 569
BmiI GGNNCC 1 cut(s) 324
BmrFI CCNGG 4 cut(s) 35, 341, 342, 363
BmsI GCATC 1 cut(s) 97
BpuMI CCSGG 2 cut(s) 341, 342
BsaI GGTCTC 1 cut(s) 238
BsaJI CCNNGG 2 cut(s) 339, 340
Bsc4I CCNNNNNNNGG 3 cut(s) 199, 578, 674
Bse1I ACTGG 1 cut(s) 229
BseBI CCWGG 2 cut(s) 35, 363
BseDI CCNNGG 2 cut(s) 339, 340
BseLI CCNNNNNNNGG 3 cut(s) 199, 578, 674
BseNI ACTGG 1 cut(s) 229
BseXI GCAGC 2 cut(s) 116, 578
BshFI GGCC 3 cut(s) 78, 216, 667
BsiHKCI CYCGRG 1 cut(s) 340
BsiSI CCGG 1 cut(s) 341
BslI CCNNNNNNNGG 3 cut(s) 199, 578, 674
BsmAI GTCTC 1 cut(s) 238
BsnI GGCC 3 cut(s) 78, 216, 667
Bso31I GGTCTC 1 cut(s) 238
BsoBI CYCGRG 1 cut(s) 340
BspACI CCGC 1 cut(s) 594
BspANI GGCC 3 cut(s) 78, 216, 667
BspLI GGNNCC 1 cut(s) 324
BspTNI GGTCTC 1 cut(s) 238
BsrI ACTGG 1 cut(s) 229
BssECI CCNNGG 2 cut(s) 339, 340
Bst2UI CCWGG 2 cut(s) 35, 363
BstC8I GCNNGC 2 cut(s) 316, 556
BstMAI GTCTC 1 cut(s) 238
BstMWI GCNNNNNNNGC 2 cut(s) 44, 75
BstNI CCWGG 2 cut(s) 35, 363
BstNSI RCATGY 2 cut(s) 104, 558
BstSCI CCNGG 4 cut(s) 33, 339, 340, 361
BstV1I GCAGC 2 cut(s) 116, 578
BstXI CCANNNNNNTGG 1 cut(s) 224
BsuI GTATCC 1 cut(s) 695
BsuRI GGCC 3 cut(s) 78, 216, 667
Cac8I GCNNGC 2 cut(s) 316, 556
Cfr13I GGNCC 1 cut(s) 569
Cfr9I CCCGGG 1 cut(s) 340
Csp6I GTAC 2 cut(s) 336, 422
CviAII CATG 6 cut(s) 101, 319, 346, 530, 555, 669
CviQI GTAC 2 cut(s) 336, 422
EaeI YGGCCR 3 cut(s) 76, 214, 665
Eco31I GGTCTC 1 cut(s) 238
Eco32I GATATC 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 569
Eco57I CTGAAG 1 cut(s) 461
Eco88I CYCGRG 1 cut(s) 340
EcoRII CCWGG 2 cut(s) 33, 361
EcoRV GATATC 1 cut(s) 259
FaeI CATG 6 cut(s) 104, 322, 349, 533, 558, 672
FatI CATG 6 cut(s) 100, 318, 345, 529, 554, 668
FauNDI CATATG 1 cut(s) 196
Fnu4HI GCNGC 2 cut(s) 105, 592
Fsp4HI GCNGC 2 cut(s) 105, 592
GluI GCNGC 2 cut(s) 105, 592
HaeIII GGCC 3 cut(s) 78, 216, 667
HapII CCGG 1 cut(s) 341
Hin1II CATG 6 cut(s) 104, 322, 349, 533, 558, 672
HinfI GANTC 2 cut(s) 125, 478
HpaII CCGG 1 cut(s) 341
Hpy188I TCNGA 2 cut(s) 93, 238
Hpy188III TCNNGA 2 cut(s) 15, 439
HpyAV CCTTC 3 cut(s) 62, 217, 536
HpyCH4V TGCA 6 cut(s) 47, 88, 104, 314, 398, 672
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 75
Hsp92II CATG 6 cut(s) 104, 322, 349, 533, 558, 672
LmnI GCTCC 1 cut(s) 322
Lsp1109I GCAGC 2 cut(s) 116, 578
LweI GCATC 1 cut(s) 97
MaeIII GTNAC 3 cut(s) 610, 629, 637
MboII GAAGA 7 cut(s) 3, 109, 181, 202, 309, 398, 473
MlsI TGGCCA 2 cut(s) 78, 667
MluCI AATT 5 cut(s) 184, 302, 399, 484, 582
MluNI TGGCCA 2 cut(s) 78, 667
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 5 cut(s) 287, 446, 572, 590, 599
Mox20I TGGCCA 2 cut(s) 78, 667
MscI TGGCCA 2 cut(s) 78, 667
Msp20I TGGCCA 2 cut(s) 78, 667
MspI CCGG 1 cut(s) 341
MspR9I CCNGG 4 cut(s) 35, 341, 342, 363
MvaI CCWGG 2 cut(s) 35, 363
MwoI GCNNNNNNNGC 2 cut(s) 44, 75
NciI CCSGG 2 cut(s) 341, 342
NdeI CATATG 1 cut(s) 196
NlaIII CATG 6 cut(s) 104, 322, 349, 533, 558, 672
NlaIV GGNNCC 1 cut(s) 324
NmuCI GTSAC 2 cut(s) 610, 629
NspI RCATGY 2 cut(s) 104, 558
PaeI GCATGC 1 cut(s) 558
PfeI GAWTC 2 cut(s) 125, 478
PflFI GACNNNGTC 1 cut(s) 647
PkrI GCNGC 2 cut(s) 106, 593
Psp6I CCWGG 2 cut(s) 33, 361
PspGI CCWGG 2 cut(s) 33, 361
PspN4I GGNNCC 1 cut(s) 324
PspPI GGNCC 1 cut(s) 569
PsyI GACNNNGTC 1 cut(s) 647
RsaI GTAC 2 cut(s) 337, 423
RsaNI GTAC 2 cut(s) 336, 422
SatI GCNGC 2 cut(s) 105, 592
Sau96I GGNCC 1 cut(s) 569
ScaI AGTACT 1 cut(s) 423
ScrFI CCNGG 4 cut(s) 35, 341, 342, 363
SetI ASST 7 cut(s) 209, 380, 447, 459, 501, 593, 610
SfaNI GCATC 1 cut(s) 97
SinI GGWCC 1 cut(s) 569
SmaI CCCGGG 1 cut(s) 342
SphI GCATGC 1 cut(s) 558
Sse9I AATT 5 cut(s) 184, 302, 399, 484, 582
SsiI CCGC 1 cut(s) 594
StyD4I CCNGG 4 cut(s) 33, 339, 340, 361
TaqI TCGA 2 cut(s) 459, 476
TaqII GACCGA 1 cut(s) 629
TasI AATT 5 cut(s) 184, 302, 399, 484, 582
TatI WGTACW 1 cut(s) 421
TfiI GAWTC 2 cut(s) 125, 478
TseFI GTSAC 2 cut(s) 610, 629
TseI GCWGC 2 cut(s) 104, 591
Tsp45I GTSAC 2 cut(s) 610, 629
TspDTI ATGAA 3 cut(s) 103, 457, 503
TspGWI ACGGA 1 cut(s) 690
TspMI CCCGGG 1 cut(s) 340
Tth111I GACNNNGTC 1 cut(s) 647
VpaK11BI GGWCC 1 cut(s) 569
XapI RAATTY 3 cut(s) 184, 302, 484
XceI RCATGY 2 cut(s) 104, 558
XmaI CCCGGG 1 cut(s) 340
ZrmI AGTACT 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.