Prupe.3G033600_v2.0.a1

GDSL esterase lipase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000193
Physical Location & Seq
Forward (+)
2479141 .. 2480754
1614 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G033600.1

Sequence Viewer

Length: 1041 bp
ATGGCATCTTTCAGGTTTCAAATGTATATCTTGGCTTTCTGTGCAGGCCTTGTTATTCAAAGCAGCTGCAATGGCCATTCTGGGCTTCAGAAAAAACATGTAGCCCTGTTCATCTTTGGTGATTCACTCTATGATCCTGGAAATAATAACTACATAAATACCACAAAAGATTTCCAGGCCAATTGGTTGCCATATGGTGAAACATTCTTCAGGTACCCAACTGGTAGATTTTCTAATGGGCGTTTAATATCAGATTTCATTGCTGAGAATGCCAAGTTGCCATTTATACCAGCATATTTACAACCTGGGTTGAAAGACTATACTTATGGGGTGAACTTTGCTTCTGGTGGAGCTGGTGCTCTAGTTGAAACCTTTCAAGGATTTGTGATAGACCTTAAAACTCAACGAAGTCAATTCAAGAAGGTGGAGAAGCAGTTGAGGCAGAAACTAGGTGAAGCAGAAGCCTACACATTGCTGTCCAAAGCTGTCTACTTAATCAGCATTGGAAGCAATGACTATTCTATCCCATTAGCCACCAATACCAGCCAGGAAGAATATGTTGGCTGGGTTATTGGCAACCTGACAAGTTGGATCGAGAAATTTGGATTTTCAAGCGTGGGCCCAATTGCTTCTACGCCAAGCATGAGAGTGATTCAACCAGGAAACACGGGCCCTTCCGGGGAGGAAGTTACAGCACTTGAGAATCTACACAATAGACTACTTTCCAAAGTCCTCACAACGCTGAAGAAAGAGCTTCAAGGATTCAAATACTCAACGCTTAATCTCTACACTTACTCTAAAGAAAGAATTAATCATCCATCAAAATATGGTTTCAAGGAAGGAAAGGCGGCATGCTGTGGCTCTGGTCCATACGGAGGAATTAACAGCTGTGGAGGGAAGAGAGGTGTGACTGAGTATAAGTTATGTAACAATGTTACTGAGTACGTCTTCTTTGACTCTTTCCATCCAACTGAAAGGGTATACGAGCAAGCATCGAAGTTATGGTGGAGTCATAACTTGGAGGAGCTATTTGAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

347

Amino Acids

38.69

Weight (kDa)

8.55

Isoelectric Point (pI)

28.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 213
AccB1I GGYRCC 1 cut(s) 213
AccI GTMKAC 2 cut(s) 489, 981
AciI CCGC 1 cut(s) 848
AclWI GGATC 2 cut(s) 128, 599
AcoI YGGCCR 1 cut(s) 73
AcsI RAATTY 1 cut(s) 599
AcuI CTGAAG 3 cut(s) 71, 193, 764
AfaI GTAC 2 cut(s) 215, 944
AfiI CCNNNNNNNGG 2 cut(s) 679, 875
AflIII ACRYGT 1 cut(s) 97
AjnI CCWGG 5 cut(s) 136, 174, 304, 546, 658
AjuI GAANNNNNNNTTGG 2 cut(s) 543, 575
AluBI AGCT 6 cut(s) 66, 353, 485, 754, 888, 1027
AluI AGCT 6 cut(s) 66, 353, 485, 754, 888, 1027
Alw21I GWGCWC 1 cut(s) 361
AlwI GGATC 2 cut(s) 128, 599
AoxI GGCC 5 cut(s) 46, 73, 177, 619, 670
ApaI GGGCCC 2 cut(s) 623, 674
ApeKI GCWGC 2 cut(s) 63, 66
ApoI RAATTY 1 cut(s) 599
AseI ATTAAT 1 cut(s) 810
Asp700I GAANNNNTTC 1 cut(s) 372
Asp718I GGTACC 1 cut(s) 213
AspS9I GGNCC 5 cut(s) 619, 620, 670, 671, 866
AsuC2I CCSGG 1 cut(s) 679
AsuHPI GGTGA 4 cut(s) 131, 209, 343, 464
AvaII GGWCC 1 cut(s) 866
BaeGI GKGCMC 2 cut(s) 623, 674
BalI TGGCCA 1 cut(s) 75
BanI GGYRCC 1 cut(s) 213
BanII GRGCYC 2 cut(s) 623, 674
BbsI GAAGAC 1 cut(s) 940
Bbv12I GWGCWC 1 cut(s) 361
BbvI GCAGC 2 cut(s) 53, 75
BccI CCATC 2 cut(s) 826, 972
BciT130I CCWGG 5 cut(s) 138, 176, 306, 548, 660
BcnI CCSGG 1 cut(s) 679
BfaI CTAG 2 cut(s) 362, 449
BisI GCNGC 3 cut(s) 64, 67, 849
BlsI GCNGC 3 cut(s) 65, 68, 850
Bme1390I CCNGG 6 cut(s) 138, 176, 306, 548, 660, 679
Bme18I GGWCC 1 cut(s) 866
BmgT120I GGNCC 5 cut(s) 619, 620, 670, 671, 866
BmiI GGNNCC 3 cut(s) 215, 621, 672
BmrFI CCNGG 6 cut(s) 138, 176, 306, 548, 660, 679
BmsI GCATC 2 cut(s) 14, 1001
BpiI GAAGAC 1 cut(s) 940
BpuEI CTTGAG 1 cut(s) 719
BpuMI CCSGG 1 cut(s) 679
BsaJI CCNNGG 2 cut(s) 305, 678
BsaXI ACNNNNNCTCC 2 cut(s) 419, 449
Bsc4I CCNNNNNNNGG 2 cut(s) 679, 875
Bse1I ACTGG 1 cut(s) 226
Bse3DI GCAATG 4 cut(s) 76, 258, 470, 517
BseBI CCWGG 5 cut(s) 138, 176, 306, 548, 660
BseDI CCNNGG 2 cut(s) 305, 678
BseGI GGATG 2 cut(s) 814, 964
BseLI CCNNNNNNNGG 2 cut(s) 679, 875
BseMI GCAATG 4 cut(s) 76, 258, 470, 517
BseMII CTCAG 3 cut(s) 255, 903, 930
BseNI ACTGG 1 cut(s) 226
BseRI GAGGAG 1 cut(s) 1037
BseSI GKGCMC 2 cut(s) 623, 674
BseXI GCAGC 2 cut(s) 53, 75
BseYI CCCAGC 1 cut(s) 564
BsgI GTGCAG 1 cut(s) 63
BshFI GGCC 5 cut(s) 48, 75, 179, 621, 672
BshNI GGYRCC 1 cut(s) 213
BsiHKAI GWGCWC 1 cut(s) 361
BsiSI CCGG 1 cut(s) 678
BslI CCNNNNNNNGG 2 cut(s) 679, 875
BsmI GAATGC 1 cut(s) 274
BsnI GGCC 5 cut(s) 48, 75, 179, 621, 672
Bsp120I GGGCCC 2 cut(s) 619, 670
Bsp1286I GDGCHC 3 cut(s) 361, 623, 674
Bsp143I GATC 2 cut(s) 133, 591
BspACI CCGC 1 cut(s) 848
BspANI GGCC 5 cut(s) 48, 75, 179, 621, 672
BspCNI CTCAG 3 cut(s) 256, 904, 931
BspLI GGNNCC 3 cut(s) 215, 621, 672
BspPI GGATC 2 cut(s) 128, 599
BspT107I GGYRCC 1 cut(s) 213
BsrDI GCAATG 4 cut(s) 76, 258, 470, 517
BsrI ACTGG 1 cut(s) 226
BssECI CCNNGG 2 cut(s) 305, 678
BssMI GATC 2 cut(s) 133, 591
BssNAI GTATAC 1 cut(s) 982
Bst1107I GTATAC 1 cut(s) 982
Bst2UI CCWGG 5 cut(s) 138, 176, 306, 548, 660
Bst6I CTCTTC 1 cut(s) 893
BstC8I GCNNGC 3 cut(s) 46, 853, 990
BstDEI CTNAG 3 cut(s) 264, 912, 939
BstF5I GGATG 2 cut(s) 814, 964
BstKTI GATC 2 cut(s) 136, 594
BstMBI GATC 2 cut(s) 133, 591
BstMWI GCNNNNNNNGC 5 cut(s) 41, 72, 269, 439, 507
BstNI CCWGG 5 cut(s) 138, 176, 306, 548, 660
BstNSI RCATGY 2 cut(s) 101, 855
BstSCI CCNGG 6 cut(s) 136, 174, 304, 546, 658, 677
BstSLI GKGCMC 2 cut(s) 623, 674
BstV1I GCAGC 2 cut(s) 53, 75
BstV2I GAAGAC 1 cut(s) 940
BstZ17I GTATAC 1 cut(s) 982
BsuRI GGCC 5 cut(s) 48, 75, 179, 621, 672
BtsCI GGATG 2 cut(s) 814, 964
Cac8I GCNNGC 3 cut(s) 46, 853, 990
Cfr13I GGNCC 5 cut(s) 619, 620, 670, 671, 866
Csp6I GTAC 2 cut(s) 214, 943
CviAII CATG 3 cut(s) 98, 643, 852
CviQI GTAC 2 cut(s) 214, 943
DdeI CTNAG 3 cut(s) 264, 912, 939
DpnI GATC 2 cut(s) 135, 593
DpnII GATC 2 cut(s) 133, 591
EaeI YGGCCR 1 cut(s) 73
Eam1104I CTCTTC 1 cut(s) 893
EarI CTCTTC 1 cut(s) 893
Eco147I AGGCCT 1 cut(s) 48
Eco24I GRGCYC 2 cut(s) 623, 674
Eco47I GGWCC 1 cut(s) 866
Eco57I CTGAAG 3 cut(s) 71, 193, 764
EcoO109I RGGNCCY 1 cut(s) 671
EcoRII CCWGG 5 cut(s) 136, 174, 304, 546, 658
EcoT38I GRGCYC 2 cut(s) 623, 674
FaeI CATG 3 cut(s) 101, 646, 855
FatI CATG 3 cut(s) 97, 642, 851
FauNDI CATATG 1 cut(s) 193
FblI GTMKAC 2 cut(s) 489, 981
Fnu4HI GCNGC 3 cut(s) 64, 67, 849
FokI GGATG 2 cut(s) 801, 951
FriOI GRGCYC 2 cut(s) 623, 674
Fsp4HI GCNGC 3 cut(s) 64, 67, 849
FspBI CTAG 2 cut(s) 362, 449
GluI GCNGC 3 cut(s) 64, 67, 849
GsaI CCCAGC 1 cut(s) 568
HaeIII GGCC 5 cut(s) 48, 75, 179, 621, 672
HapII CCGG 1 cut(s) 678
Hin1II CATG 3 cut(s) 101, 646, 855
HinfI GANTC 6 cut(s) 122, 652, 703, 762, 956, 1009
HpaII CCGG 1 cut(s) 678
HphI GGTGA 4 cut(s) 131, 209, 343, 464
Hpy166II GTNNAC 3 cut(s) 334, 490, 982
Hpy188I TCNGA 2 cut(s) 90, 253
Hpy188III TCNNGA 2 cut(s) 418, 595
Hpy8I GTNNAC 3 cut(s) 334, 490, 982
HpyAV CCTTC 3 cut(s) 415, 684, 833
HpyCH4IV ACGT 1 cut(s) 945
HpyCH4V TGCA 2 cut(s) 44, 69
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 72, 269, 439, 507
HpyF3I CTNAG 3 cut(s) 264, 912, 939
HpySE526I ACGT 1 cut(s) 945
Hsp92II CATG 3 cut(s) 101, 646, 855
KpnI GGTACC 1 cut(s) 217
Kzo9I GATC 2 cut(s) 133, 591
LmnI GCTCC 2 cut(s) 350, 1024
Lsp1109I GCAGC 2 cut(s) 53, 75
LweI GCATC 2 cut(s) 14, 1001
MaeI CTAG 2 cut(s) 362, 449
MaeII ACGT 1 cut(s) 945
MaeIII GTNAC 4 cut(s) 688, 907, 926, 934
MalI GATC 2 cut(s) 135, 593
MboI GATC 2 cut(s) 133, 591
MboII GAAGA 5 cut(s) 199, 563, 757, 910, 940
MfeI CAATTG 2 cut(s) 181, 624
MhlI GDGCHC 3 cut(s) 361, 623, 674
MlsI TGGCCA 1 cut(s) 75
MluCI AATT 6 cut(s) 181, 413, 599, 624, 807, 879
MluNI TGGCCA 1 cut(s) 75
MlyI GAGTC 2 cut(s) 950, 1018
MmeI TCCRAC 2 cut(s) 569, 992
MnlI CCTC 7 cut(s) 432, 676, 743, 869, 887, 896, 1015
Mox20I TGGCCA 1 cut(s) 75
MroXI GAANNNNTTC 1 cut(s) 372
MscI TGGCCA 1 cut(s) 75
MseI TTAA 6 cut(s) 245, 396, 494, 780, 810, 882
MslI CAYNNNNRTG 1 cut(s) 647
Msp20I TGGCCA 1 cut(s) 75
MspA1I CMGCKG 2 cut(s) 66, 888
MspI CCGG 1 cut(s) 678
MspR9I CCNGG 6 cut(s) 138, 176, 306, 548, 660, 679
MunI CAATTG 2 cut(s) 181, 624
Mva1269I GAATGC 1 cut(s) 274
MvaI CCWGG 5 cut(s) 138, 176, 306, 548, 660
MwoI GCNNNNNNNGC 5 cut(s) 41, 72, 269, 439, 507
NciI CCSGG 1 cut(s) 679
NdeI CATATG 1 cut(s) 193
NdeII GATC 2 cut(s) 133, 591
NlaIII CATG 3 cut(s) 101, 646, 855
NlaIV GGNNCC 3 cut(s) 215, 621, 672
NmuCI GTSAC 1 cut(s) 907
NspI RCATGY 2 cut(s) 101, 855
PaeI GCATGC 1 cut(s) 855
PceI AGGCCT 1 cut(s) 48
PciI ACATGT 1 cut(s) 97
PctI GAATGC 1 cut(s) 274
PdmI GAANNNNTTC 1 cut(s) 372
PfeI GAWTC 4 cut(s) 122, 652, 703, 762
PfoI TCCNGGA 1 cut(s) 136
PkrI GCNGC 3 cut(s) 65, 68, 850
PleI GAGTC 2 cut(s) 950, 1017
PpsI GAGTC 2 cut(s) 950, 1017
PscI ACATGT 1 cut(s) 97
PshBI ATTAAT 1 cut(s) 810
Psp6I CCWGG 5 cut(s) 136, 174, 304, 546, 658
PspFI CCCAGC 1 cut(s) 564
PspGI CCWGG 5 cut(s) 136, 174, 304, 546, 658
PspN4I GGNNCC 3 cut(s) 215, 621, 672
PspOMI GGGCCC 2 cut(s) 619, 670
PspPI GGNCC 5 cut(s) 619, 620, 670, 671, 866
PvuII CAGCTG 2 cut(s) 66, 888
RsaI GTAC 2 cut(s) 215, 944
RsaNI GTAC 2 cut(s) 214, 943
RseI CAYNNNNRTG 1 cut(s) 647
SaqAI TTAA 6 cut(s) 245, 396, 494, 780, 810, 882
SatI GCNGC 3 cut(s) 64, 67, 849
Sau3AI GATC 2 cut(s) 133, 591
Sau96I GGNCC 5 cut(s) 619, 620, 670, 671, 866
SchI GAGTC 2 cut(s) 950, 1018
ScrFI CCNGG 6 cut(s) 138, 176, 306, 548, 660, 679
SduI GDGCHC 3 cut(s) 361, 623, 674
SfaNI GCATC 2 cut(s) 14, 1001
SinI GGWCC 1 cut(s) 866
SmiMI CAYNNNNRTG 1 cut(s) 647
SmlI CTYRAG 1 cut(s) 698
SmoI CTYRAG 1 cut(s) 698
SphI GCATGC 1 cut(s) 855
Sse9I AATT 6 cut(s) 181, 413, 599, 624, 807, 879
SseBI AGGCCT 1 cut(s) 48
SsiI CCGC 1 cut(s) 848
SspMI CTAG 2 cut(s) 362, 449
StuI AGGCCT 1 cut(s) 48
StyD4I CCNGG 6 cut(s) 136, 174, 304, 546, 658, 677
TaiI ACGT 1 cut(s) 948
TaqI TCGA 2 cut(s) 594, 995
TasI AATT 6 cut(s) 181, 413, 599, 624, 807, 879
TauI GCSGC 1 cut(s) 851
TfiI GAWTC 4 cut(s) 122, 652, 703, 762
Tru1I TTAA 6 cut(s) 245, 396, 494, 780, 810, 882
Tru9I TTAA 6 cut(s) 245, 396, 494, 780, 810, 882
TseFI GTSAC 1 cut(s) 907
TseI GCWGC 2 cut(s) 63, 66
Tsp45I GTSAC 1 cut(s) 907
TspDTI ATGAA 2 cut(s) 100, 247
TspGWI ACGGA 1 cut(s) 888
VpaK11BI GGWCC 1 cut(s) 866
VspI ATTAAT 1 cut(s) 810
XapI RAATTY 1 cut(s) 599
XceI RCATGY 2 cut(s) 101, 855
XmiI GTMKAC 2 cut(s) 489, 981
XmnI GAANNNNTTC 1 cut(s) 372
XspI CTAG 2 cut(s) 362, 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.