Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0000193

Physical Location & Seq

Genomic Coordinates Reverse (-)

23567035 .. 23568526

Gene Structure 1492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1122400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTCTCTCTACAATGGCCCAGCCTTAAATTTTGGGATTGAAGCTCTGCGTATTATTATGGGCTACGATTACCTTTTCCCTTTCGATACAAATTCCAGTGTGCTTCGAACCTACTCCCATGAGGAATTTAGAGGCCTGGTGATCGGCAACATAACTACAGTGATCAAAGAAATATATAACGAAGGAGGAAGAAATTTTGGGTTTATGAACATGTATGATCTTGGTTGTATTCCCTACGGAAAAGCACTAGGATCTACACCAAATGATGCATGCTACGAAGAACTTACACCATACGTGAAACTACACAACAAAGCACTTTTCAAACTCCTGAAAAAGCTAGAGAGTGAACTCACGGGAGATATTCACTCTCCGATTTTAACAAGTTTCAAGGAAGGGAAGATGGCATGTTGTGGCACTGGTCCATATCGAGGAATTAATAGCTGTGGAGGGAAGAGAGGTATCGAAGAGTATGACTTATGCGACAATGTTACTGAATATCTTTTCTTTGACGCTGCTCATCCAAATGAAAAGGCCTACGAGCAGTTTGCCAAGCAATTTTGGAGTGGAAATCCCGACGTCGCTGCGCCGTACAATTTGAAAGCACTATTTGAATCCAATCAAGAATTAATCAAAGATATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0006629 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009817 GO:0009861 GO:0009866 GO:0009871 GO:0009873 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0010928 GO:0010930 GO:0014070 GO:0016298 GO:0016787 GO:0016788 GO:0023051 GO:0023052 GO:0023057 GO:0031347 GO:0031349 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044238 GO:0044421 GO:0045087 GO:0045088 GO:0045089 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080134 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

214

Amino Acids

23.96

Weight (kDa)

5.16

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	53 - 185	1.3e-10	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca	FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica	MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica	Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis	pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis	RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata	RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora	Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa	Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha	Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana	Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	579
AclWI	GGATC	1 cut(s)	259
AcsI	RAATTY	4 cut(s)	28, 91, 125, 193
AcyI	GRCGYC	1 cut(s)	576
AfaI	GTAC	1 cut(s)	590
AfiI	CCNNNNNNNGG	1 cut(s)	428
AflIII	ACRYGT	1 cut(s)	210
AgsI	TTSAA	5 cut(s)	41, 322, 388, 598, 611
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	3 cut(s)	44, 337, 441
AluI	AGCT	3 cut(s)	44, 337, 441
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	259
AoxI	GGCC	3 cut(s)	16, 133, 531
ApeKI	GCWGC	2 cut(s)	512, 581
ApoI	RAATTY	4 cut(s)	28, 91, 125, 193
AseI	ATTAAT	2 cut(s)	435, 626
AspLEI	GCGC	1 cut(s)	586
AspS9I	GGNCC	2 cut(s)	17, 419
AsuHPI	GGTGA	1 cut(s)	151
AsuII	TTCGAA	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	419
BbvI	GCAGC	2 cut(s)	499, 568
BccI	CCATC	1 cut(s)	394
BceAI	ACGGC	1 cut(s)	571
BcgI	CGANNNNNNTGC	4 cut(s)	527, 561, 563, 597
BciT130I	CCWGG	1 cut(s)	137
BclI	TGATCA	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	2 cut(s)	248, 338
BfmI	CTRYAG	1 cut(s)	156
BisI	GCNGC	2 cut(s)	513, 582
BlsI	GCNGC	2 cut(s)	514, 583
Bme1390I	CCNGG	1 cut(s)	137
Bme18I	GGWCC	1 cut(s)	419
BmgT120I	GGNCC	2 cut(s)	17, 419
BmrFI	CCNGG	1 cut(s)	137
BmsI	GCATC	1 cut(s)	256
Bpu14I	TTCGAA	1 cut(s)	106
BsaAI	YACGTR	1 cut(s)	295
BsaHI	GRCGYC	1 cut(s)	576
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse1I	ACTGG	2 cut(s)	96, 421
BseBI	CCWGG	1 cut(s)	137
BseGI	GGATG	1 cut(s)	517
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseNI	ACTGG	2 cut(s)	96, 421
BseXI	GCAGC	2 cut(s)	499, 568
BseYI	CCCAGC	1 cut(s)	19
BshFI	GGCC	3 cut(s)	18, 135, 533
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	3 cut(s)	18, 135, 533
Bsp119I	TTCGAA	1 cut(s)	106
Bsp143I	GATC	4 cut(s)	141, 162, 217, 251
BspANI	GGCC	3 cut(s)	18, 135, 533
BspPI	GGATC	1 cut(s)	259
BspT104I	TTCGAA	1 cut(s)	106
BsrI	ACTGG	2 cut(s)	96, 421
BssMI	GATC	4 cut(s)	141, 162, 217, 251
BssNI	GRCGYC	1 cut(s)	576
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	2 cut(s)	446, 459
BstACI	GRCGYC	1 cut(s)	576
BstBAI	YACGTR	1 cut(s)	295
BstBI	TTCGAA	1 cut(s)	106
BstC8I	GCNNGC	1 cut(s)	271
BstF5I	GGATG	1 cut(s)	517
BstHHI	GCGC	1 cut(s)	586
BstKTI	GATC	4 cut(s)	144, 165, 220, 254
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	4 cut(s)	141, 162, 217, 251
BstNI	CCWGG	1 cut(s)	137
BstNSI	RCATGY	3 cut(s)	214, 273, 408
BstSCI	CCNGG	1 cut(s)	135
BstSFI	CTRYAG	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	499, 568
BstX2I	RGATCY	1 cut(s)	251
BstYI	RGATCY	1 cut(s)	251
BsuRI	GGCC	3 cut(s)	18, 135, 533
BtsCI	GGATG	1 cut(s)	517
BtsIMutI	CAGTG	3 cut(s)	103, 165, 414
Cac8I	GCNNGC	1 cut(s)	271
CfoI	GCGC	1 cut(s)	586
Cfr13I	GGNCC	2 cut(s)	17, 419
CseI	GACGC	1 cut(s)	518
Csp6I	GTAC	1 cut(s)	589
CviAII	CATG	4 cut(s)	119, 211, 270, 405
CviJI	RGCY	8 cut(s)	18, 23, 44, 63, 135, 337, 441, 533
CviKI_1	RGCY	8 cut(s)	18, 23, 44, 63, 135, 337, 441, 533
CviQI	GTAC	1 cut(s)	589
DpnI	GATC	4 cut(s)	143, 164, 219, 253
DpnII	GATC	4 cut(s)	141, 162, 217, 251
Eam1104I	CTCTTC	2 cut(s)	446, 459
EarI	CTCTTC	2 cut(s)	446, 459
Eco147I	AGGCCT	2 cut(s)	135, 533
Eco32I	GATATC	1 cut(s)	637
Eco47I	GGWCC	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	135
EcoRV	GATATC	1 cut(s)	637
EcoT22I	ATGCAT	1 cut(s)	271
FaeI	CATG	4 cut(s)	122, 214, 273, 408
FatI	CATG	4 cut(s)	118, 210, 269, 404
FbaI	TGATCA	1 cut(s)	162
Fnu4HI	GCNGC	2 cut(s)	513, 582
FokI	GGATG	1 cut(s)	504
Fsp4HI	GCNGC	2 cut(s)	513, 582
FspBI	CTAG	2 cut(s)	248, 338
GlaI	GCGC	1 cut(s)	585
GluI	GCNGC	2 cut(s)	513, 582
GsaI	CCCAGC	1 cut(s)	23
HaeIII	GGCC	3 cut(s)	18, 135, 533
HgaI	GACGC	1 cut(s)	518
HhaI	GCGC	1 cut(s)	586
Hin1I	GRCGYC	1 cut(s)	576
Hin1II	CATG	4 cut(s)	122, 214, 273, 408
Hin6I	GCGC	1 cut(s)	584
HinP1I	GCGC	1 cut(s)	584
HinfI	GANTC	1 cut(s)	611
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	1 cut(s)	347
Hpy188I	TCNGA	2 cut(s)	372, 641
Hpy188III	TCNNGA	3 cut(s)	328, 572, 620
Hpy8I	GTNNAC	1 cut(s)	347
Hpy99I	CGWCG	2 cut(s)	578, 581
HpyAV	CCTTC	2 cut(s)	176, 386
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4IV	ACGT	2 cut(s)	294, 576
HpyCH4V	TGCA	1 cut(s)	269
HpySE526I	ACGT	2 cut(s)	294, 576
Hsp92I	GRCGYC	1 cut(s)	576
Hsp92II	CATG	4 cut(s)	122, 214, 273, 408
HspAI	GCGC	1 cut(s)	584
Ksp22I	TGATCA	1 cut(s)	162
Kzo9I	GATC	4 cut(s)	141, 162, 217, 251
LpnPI	CCDG	6 cut(s)	33, 109, 122, 149, 341, 402
Lsp1109I	GCAGC	2 cut(s)	499, 568
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	2 cut(s)	248, 338
MaeII	ACGT	2 cut(s)	294, 576
MaeIII	GTNAC	1 cut(s)	487
MalI	GATC	4 cut(s)	143, 164, 219, 253
MboI	GATC	4 cut(s)	141, 162, 217, 251
MboII	GAAGA	5 cut(s)	201, 290, 409, 463, 476
MflI	RGATCY	1 cut(s)	251
MluCI	AATT	8 cut(s)	28, 91, 125, 193, 432, 554, 592, 623
MnlI	CCTC	6 cut(s)	115, 125, 179, 422, 440, 449
Mph1103I	ATGCAT	1 cut(s)	271
MseI	TTAA	4 cut(s)	26, 377, 435, 626
MslI	CAYNNNNRTG	1 cut(s)	522
MspR9I	CCNGG	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	137
NdeII	GATC	4 cut(s)	141, 162, 217, 251
NlaIII	CATG	4 cut(s)	122, 214, 273, 408
NsiI	ATGCAT	1 cut(s)	271
NspI	RCATGY	3 cut(s)	214, 273, 408
NspV	TTCGAA	1 cut(s)	106
PaeI	GCATGC	1 cut(s)	273
PceI	AGGCCT	2 cut(s)	135, 533
PciI	ACATGT	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	611
PkrI	GCNGC	2 cut(s)	514, 583
Ppu21I	YACGTR	1 cut(s)	295
PscI	ACATGT	1 cut(s)	210
PshBI	ATTAAT	2 cut(s)	435, 626
Psp6I	CCWGG	1 cut(s)	135
PspFI	CCCAGC	1 cut(s)	19
PspGI	CCWGG	1 cut(s)	135
PspPI	GGNCC	2 cut(s)	17, 419
PsuI	RGATCY	1 cut(s)	251
RsaI	GTAC	1 cut(s)	590
RsaNI	GTAC	1 cut(s)	589
RseI	CAYNNNNRTG	1 cut(s)	522
SaqAI	TTAA	4 cut(s)	26, 377, 435, 626
SatI	GCNGC	2 cut(s)	513, 582
Sau3AI	GATC	4 cut(s)	141, 162, 217, 251
Sau96I	GGNCC	2 cut(s)	17, 419
ScrFI	CCNGG	1 cut(s)	137
SetI	ASST	8 cut(s)	46, 75, 113, 297, 339, 443, 460, 579
SfaNI	GCATC	1 cut(s)	256
SfcI	CTRYAG	1 cut(s)	156
SfuI	TTCGAA	1 cut(s)	106
SinI	GGWCC	1 cut(s)	419
SmiMI	CAYNNNNRTG	1 cut(s)	522
SphI	GCATGC	1 cut(s)	273
Sse9I	AATT	8 cut(s)	28, 91, 125, 193, 432, 554, 592, 623
SseBI	AGGCCT	2 cut(s)	135, 533
SspMI	CTAG	2 cut(s)	248, 338
StuI	AGGCCT	2 cut(s)	135, 533
StyD4I	CCNGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	160
TaiI	ACGT	2 cut(s)	297, 579
TaqI	TCGA	4 cut(s)	84, 106, 427, 462
TasI	AATT	8 cut(s)	28, 91, 125, 193, 432, 554, 592, 623
TfiI	GAWTC	1 cut(s)	611
Tru1I	TTAA	4 cut(s)	26, 377, 435, 626
Tru9I	TTAA	4 cut(s)	26, 377, 435, 626
TscAI	CASTG	3 cut(s)	103, 165, 421
TseI	GCWGC	2 cut(s)	512, 581
TspDTI	ATGAA	2 cut(s)	221, 540
TspGWI	ACGGA	1 cut(s)	252
TspRI	CASTG	3 cut(s)	103, 165, 421
VpaK11BI	GGWCC	1 cut(s)	419
VspI	ATTAAT	2 cut(s)	435, 626
XapI	RAATTY	4 cut(s)	28, 91, 125, 193
XceI	RCATGY	3 cut(s)	214, 273, 408
XspI	CTAG	2 cut(s)	248, 338
ZraI	GACGTC	1 cut(s)	577
Zsp2I	ATGCAT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.