RchiOBHm_Chr2g0147431

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000193
Physical Location & Seq
Reverse (-)
65062223 .. 65063177
955 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51705

Sequence Viewer

Length: 531 bp
ATGGTGATTGGCAACCTAACGAATGTGATCAAAGGAATATATAAGAAAGGAGGAAGGAAATTTGGGTTTGCCAATGGAATCCCTCTTGGTTGTGCACCAATGACGAGGGCAACAAAGCCGGGAAACCCAGGCACCTGTGTGGATGAAATTACTGCAGTATTGAAACTGCACAATAAAGTACTAGCTAAAGTCCTCCTCAAGCTTAAACGACAGCTTCATGGATTTAAATATTCAAATCCAAATGTCTACTCTTACCTAGATGAAATCATTAAGAATCCATCACAACATGGCTTCAAGGAAGGAAAGGTGTCATGTTGTGGCTCTGGTCCATACAGAGGAACTATGAGCTGTGGAGGAAAGAGAGGTGTGACCGAGTATCAATTATGTGACAATGTTAACGATTATGTCTTTTTCGACTCTGCCCATCCAACCGACAGGGCTAACGAGCAGGTTTCCAAGTATTGGTGGAGCCATACTACTCCTAATGTGAAAGTGCCTCACGTTTATCTGAAAGAGCTATTCGAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

176

Amino Acids

19.58

Weight (kDa)

9.42

Isoelectric Point (pI)

12.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 6 - 154 3.1e-08 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 439
AccB1I GGYRCC 1 cut(s) 131
AccB7I CCANNNNNTGG 1 cut(s) 462
AccI GTMKAC 1 cut(s) 246
AcsI RAATTY 1 cut(s) 59
AfaI GTAC 1 cut(s) 180
AfiI CCNNNNNNNGG 2 cut(s) 335, 462
AgsI TTSAA 3 cut(s) 163, 234, 295
AjnI CCWGG 1 cut(s) 127
AleI CACNNNNGTG 1 cut(s) 137
AluBI AGCT 5 cut(s) 185, 202, 214, 348, 517
AluI AGCT 5 cut(s) 185, 202, 214, 348, 517
Alw21I GWGCWC 1 cut(s) 97
Alw44I GTGCAC 1 cut(s) 93
ApaLI GTGCAC 1 cut(s) 93
ApoI RAATTY 1 cut(s) 59
AspS9I GGNCC 1 cut(s) 326
AsuC2I CCSGG 1 cut(s) 120
AsuHPI GGTGA 1 cut(s) 16
AsuII TTCGAA 1 cut(s) 522
AvaII GGWCC 1 cut(s) 326
BaeGI GKGCMC 1 cut(s) 97
BanI GGYRCC 1 cut(s) 131
Bbv12I GWGCWC 1 cut(s) 97
BccI CCATC 2 cut(s) 286, 432
BciT130I CCWGG 1 cut(s) 129
BclI TGATCA 1 cut(s) 27
BcnI CCSGG 1 cut(s) 120
BfaI CTAG 2 cut(s) 182, 257
BfmI CTRYAG 1 cut(s) 153
BfuAI ACCTGC 1 cut(s) 439
BmcAI AGTACT 1 cut(s) 180
Bme1390I CCNGG 2 cut(s) 120, 129
Bme18I GGWCC 1 cut(s) 326
BmgT120I GGNCC 1 cut(s) 326
BmiI GGNNCC 2 cut(s) 133, 470
BmrFI CCNGG 2 cut(s) 120, 129
Bpu14I TTCGAA 1 cut(s) 522
BpuEI CTTGAG 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 127
Bsc4I CCNNNNNNNGG 2 cut(s) 335, 462
BseBI CCWGG 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 2 cut(s) 148, 424
BseLI CCNNNNNNNGG 2 cut(s) 335, 462
BseRI GAGGAG 1 cut(s) 185
BseSI GKGCMC 1 cut(s) 97
BsgI GTGCAG 1 cut(s) 152
BshNI GGYRCC 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 97
BsiSI CCGG 1 cut(s) 119
BslI CCNNNNNNNGG 2 cut(s) 335, 462
Bsp119I TTCGAA 1 cut(s) 522
Bsp1286I GDGCHC 1 cut(s) 97
Bsp143I GATC 1 cut(s) 27
BspLI GGNNCC 2 cut(s) 133, 470
BspMAI CTGCAG 1 cut(s) 157
BspMI ACCTGC 1 cut(s) 439
BspT104I TTCGAA 1 cut(s) 522
BspT107I GGYRCC 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 129
BstBI TTCGAA 1 cut(s) 522
BstF5I GGATG 2 cut(s) 148, 424
BstKTI GATC 1 cut(s) 30
BstMBI GATC 1 cut(s) 27
BstNI CCWGG 1 cut(s) 129
BstSCI CCNGG 2 cut(s) 118, 127
BstSFI CTRYAG 1 cut(s) 153
BstSLI GKGCMC 1 cut(s) 97
BtsCI GGATG 2 cut(s) 148, 424
BveI ACCTGC 1 cut(s) 439
Cfr13I GGNCC 1 cut(s) 326
Csp6I GTAC 1 cut(s) 179
CviAII CATG 3 cut(s) 218, 287, 312
CviQI GTAC 1 cut(s) 179
DpnI GATC 1 cut(s) 29
DpnII GATC 1 cut(s) 27
DraI TTTAAA 1 cut(s) 226
Eco47I GGWCC 1 cut(s) 326
EcoRII CCWGG 1 cut(s) 127
FaeI CATG 3 cut(s) 221, 290, 315
FatI CATG 3 cut(s) 217, 286, 311
FbaI TGATCA 1 cut(s) 27
FblI GTMKAC 1 cut(s) 246
FokI GGATG 2 cut(s) 155, 411
FspBI CTAG 2 cut(s) 182, 257
HapII CCGG 1 cut(s) 119
Hin1II CATG 3 cut(s) 221, 290, 315
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 3 cut(s) 78, 274, 416
HpaI GTTAAC 1 cut(s) 397
HpaII CCGG 1 cut(s) 119
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 3 cut(s) 95, 247, 397
Hpy188I TCNGA 1 cut(s) 510
Hpy8I GTNNAC 3 cut(s) 95, 247, 397
HpyAV CCTTC 2 cut(s) 48, 293
HpyCH4IV ACGT 1 cut(s) 501
HpyCH4V TGCA 3 cut(s) 95, 155, 169
HpySE526I ACGT 1 cut(s) 501
Hsp92II CATG 3 cut(s) 221, 290, 315
Ksp22I TGATCA 1 cut(s) 27
KspAI GTTAAC 1 cut(s) 397
Kzo9I GATC 1 cut(s) 27
LmnI GCTCC 1 cut(s) 468
LpnPI CCDG 7 cut(s) 114, 132, 141, 148, 309, 421, 434
MaeI CTAG 2 cut(s) 182, 257
MaeII ACGT 1 cut(s) 501
MaeIII GTNAC 2 cut(s) 367, 386
MalI GATC 1 cut(s) 29
MboI GATC 1 cut(s) 27
MhlI GDGCHC 1 cut(s) 97
MluCI AATT 3 cut(s) 59, 147, 380
MlyI GAGTC 1 cut(s) 410
MmeI TCCRAC 1 cut(s) 452
MnlI CCTC 9 cut(s) 44, 93, 99, 203, 206, 329, 347, 356, 507
MseI TTAA 4 cut(s) 204, 225, 270, 396
MslI CAYNNNNRTG 1 cut(s) 137
MspI CCGG 1 cut(s) 119
MspR9I CCNGG 2 cut(s) 120, 129
MvaI CCWGG 1 cut(s) 129
NciI CCSGG 1 cut(s) 120
NdeII GATC 1 cut(s) 27
NlaIII CATG 3 cut(s) 221, 290, 315
NlaIV GGNNCC 2 cut(s) 133, 470
NmuCI GTSAC 2 cut(s) 367, 386
NspV TTCGAA 1 cut(s) 522
OliI CACNNNNGTG 1 cut(s) 137
PfeI GAWTC 2 cut(s) 78, 274
PflMI CCANNNNNTGG 1 cut(s) 462
PleI GAGTC 1 cut(s) 410
PpsI GAGTC 1 cut(s) 410
Psp6I CCWGG 1 cut(s) 127
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 2 cut(s) 133, 470
PspPI GGNCC 1 cut(s) 326
PstI CTGCAG 1 cut(s) 157
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
RseI CAYNNNNRTG 1 cut(s) 137
SaqAI TTAA 4 cut(s) 204, 225, 270, 396
Sau3AI GATC 1 cut(s) 27
Sau96I GGNCC 1 cut(s) 326
ScaI AGTACT 1 cut(s) 180
SchI GAGTC 1 cut(s) 410
ScrFI CCNGG 2 cut(s) 120, 129
SduI GDGCHC 1 cut(s) 97
SfcI CTRYAG 1 cut(s) 153
SfuI TTCGAA 1 cut(s) 522
SinI GGWCC 1 cut(s) 326
SmiI ATTTAAAT 1 cut(s) 226
SmiMI CAYNNNNRTG 1 cut(s) 137
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 3 cut(s) 59, 147, 380
SspI AATATT 1 cut(s) 230
SspMI CTAG 2 cut(s) 182, 257
StyD4I CCNGG 2 cut(s) 118, 127
SwaI ATTTAAAT 1 cut(s) 226
TaiI ACGT 1 cut(s) 504
TaqI TCGA 2 cut(s) 414, 522
TaqII GACCGA 1 cut(s) 386
TasI AATT 3 cut(s) 59, 147, 380
TatI WGTACW 1 cut(s) 178
TfiI GAWTC 2 cut(s) 78, 274
Tru1I TTAA 4 cut(s) 204, 225, 270, 396
Tru9I TTAA 4 cut(s) 204, 225, 270, 396
TseFI GTSAC 2 cut(s) 367, 386
Tsp45I GTSAC 2 cut(s) 367, 386
TspDTI ATGAA 3 cut(s) 159, 206, 276
Van91I CCANNNNNTGG 1 cut(s) 462
VneI GTGCAC 1 cut(s) 93
VpaK11BI GGWCC 1 cut(s) 326
XapI RAATTY 1 cut(s) 59
XmiI GTMKAC 1 cut(s) 246
XspI CTAG 2 cut(s) 182, 257
ZrmI AGTACT 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.