Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0000193

Physical Location & Seq

Genomic Coordinates Reverse (-)

13968324 .. 13974002

Gene Structure 5679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1151700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGCGAATATAAGTATCCAAGTCTTTGCCTTTGCCTTCTTTGCTAGCCTTCTTATCACAACGTCCCAAAGTCATGGCATGCCAATAAAACATGTACCCCTTTTCATTCTTGGGGATTCCATATTTGATGCTGGAAATAATGACTACTTCAACACTACTTCAAAAGCAAATTTTTTTCCATATGGTGAAACCTTCTTTAATCACTCCTCAACGGGGCGATTTTCTAATGGTCGTCTAATTCCAGATTTTATTGCTGAGTATGCAAAGTTGCCATTGATTCCACCATATCTACAGCCTGGTAATCGTGAATTCAGATATGGAGTAAACTTTGCATCTGCTGGAGCTGGTGCTTTGGTTGAAATTAATCAAGGCTTGGTGATAGACCTTCCTTCTCAACTCTCAAATTTAGAAAGCGTTAGAAAGTCATTGAGACAGGAACTAGGGCATGATGAAGTCACAACTCTGCTATCAAGAGCTGTTTACTTGTTTGCCTTCGGAAGCAACGATTACATTGTCCCTTTTGAGAAAAATTCCAGTGTGCTTCATTCCTACTCCCCTGAGAAATATGTAGGACTGGTGATAGGCAACATAACTTCAGCGATCAAGGAAATATACAGGAATGGAGGAAGAAATTTTGGGTTTCTTGGCATGTGGCCTGCTGCTTGTATTCCATACGGAAGAGCACTTGAAAATAAAAATGGTGCTTGCTTTGAGGAAATTACACCATATGTGGTACTCCACGATAAAGCACTTCTCAAAACCCTGCAAAAGCTAGAGAATGAACTCAAAGGATTTCGATACTCACTCATTGAAGCTTATGAGTTTCTGAAACGCAGAATAGATCACCCTTCCAAATATGGTTTTGTGGAAGGAAAGGCAGCATGCTGCGGCAGTGGTCCATATCGAGGACATTTGAGCTGTGGAGTGAAGGGAGGTTACTCTTTATGTCACAATGTTAGTGAATATGTCTTCTTTGATCCTTTTCATCCAACTGAAAGGGCATACGAGCAGCTTGCCAAGCAATTCTGGATTGGGACTCCGAATTCCACTGTGGGTTACAATCTGAAAACACTATTTGAAACTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0006629 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009817 GO:0009861 GO:0009866 GO:0009871 GO:0009873 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0010928 GO:0010930 GO:0014070 GO:0016298 GO:0016787 GO:0016788 GO:0023051 GO:0023052 GO:0023057 GO:0031347 GO:0031349 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044238 GO:0044421 GO:0045087 GO:0045088 GO:0045089 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080134 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

363

Amino Acids

40.45

Weight (kDa)

7.64

Isoelectric Point (pI)

34.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	34 - 341	4.5e-27	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca	FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica	MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica	Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis	pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis	RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata	RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora	Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa	Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha	Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana	Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	888
AclWI	GGATC	1 cut(s)	971
AcsI	RAATTY	6 cut(s)	169, 308, 403, 529, 631, 1042
AcuI	CTGAAG	1 cut(s)	579
AfaI	GTAC	2 cut(s)	96, 735
AfiI	CCNNNNNNNGG	2 cut(s)	213, 905
AflIII	ACRYGT	1 cut(s)	91
AgsI	TTSAA	6 cut(s)	151, 162, 359, 689, 812, 1079
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	6 cut(s)	344, 476, 772, 815, 918, 1012
AluI	AGCT	6 cut(s)	344, 476, 772, 815, 918, 1012
Alw21I	GWGCWC	1 cut(s)	685
Alw26I	GTCTC	1 cut(s)	424
AlwI	GGATC	1 cut(s)	971
AoxI	GGCC	1 cut(s)	653
ApeKI	GCWGC	4 cut(s)	659, 878, 885, 1009
ApoI	RAATTY	6 cut(s)	169, 308, 403, 529, 631, 1042
AseI	ATTAAT	1 cut(s)	363
AspS9I	GGNCC	1 cut(s)	896
AsuHPI	GGTGA	4 cut(s)	197, 388, 589, 836
AsuNHI	GCTAGC	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	896
BarI	GAAGNNNNNNTAC	2 cut(s)	920, 952
BbsI	GAAGAC	1 cut(s)	961
Bbv12I	GWGCWC	1 cut(s)	685
BbvI	GCAGC	4 cut(s)	646, 872, 890, 1021
BcgI	CGANNNNNNTGC	2 cut(s)	995, 1029
BciT130I	CCWGG	1 cut(s)	297
BciVI	GTATCC	1 cut(s)	26
BcoDI	GTCTC	1 cut(s)	424
BfaI	CTAG	3 cut(s)	45, 440, 773
BfmI	CTRYAG	1 cut(s)	290
BfuI	GTATCC	1 cut(s)	26
BisI	GCNGC	5 cut(s)	660, 879, 886, 889, 1010
BlsI	GCNGC	5 cut(s)	661, 880, 887, 890, 1011
Bme1390I	CCNGG	1 cut(s)	297
Bme18I	GGWCC	1 cut(s)	896
BmgT120I	GGNCC	1 cut(s)	896
BmrFI	CCNGG	1 cut(s)	297
BmsI	GCATC	2 cut(s)	118, 341
BmtI	GCTAGC	1 cut(s)	48
BpiI	GAAGAC	1 cut(s)	961
BpmI	CTGGAG	1 cut(s)	360
Bsc4I	CCNNNNNNNGG	2 cut(s)	213, 905
Bse1I	ACTGG	2 cut(s)	534, 579
BseBI	CCWGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	985
BseLI	CCNNNNNNNGG	2 cut(s)	213, 905
BseMII	CTCAG	2 cut(s)	246, 549
BseNI	ACTGG	2 cut(s)	534, 579
BseRI	GAGGAG	1 cut(s)	196
BseXI	GCAGC	4 cut(s)	646, 872, 890, 1021
BshFI	GGCC	1 cut(s)	655
BsiHKAI	GWGCWC	1 cut(s)	685
BslFI	GGGAC	3 cut(s)	49, 500, 1048
BslI	CCNNNNNNNGG	2 cut(s)	213, 905
BsmAI	GTCTC	1 cut(s)	424
BsmFI	GGGAC	3 cut(s)	49, 500, 1048
BsnI	GGCC	1 cut(s)	655
Bsp1286I	GDGCHC	1 cut(s)	685
Bsp143I	GATC	3 cut(s)	600, 841, 976
BspACI	CCGC	1 cut(s)	888
BspANI	GGCC	1 cut(s)	655
BspCNI	CTCAG	2 cut(s)	247, 550
BspOI	GCTAGC	1 cut(s)	48
BspPI	GGATC	1 cut(s)	971
BspQI	GCTCTTC	1 cut(s)	673
BsrI	ACTGG	2 cut(s)	534, 579
BssMI	GATC	3 cut(s)	600, 841, 976
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	1051
Bst6I	CTCTTC	1 cut(s)	673
BstC8I	GCNNGC	6 cut(s)	46, 80, 657, 706, 883, 1014
BstDEI	CTNAG	2 cut(s)	255, 558
BstF5I	GGATG	1 cut(s)	985
BstKTI	GATC	3 cut(s)	603, 844, 979
BstMAI	GTCTC	1 cut(s)	424
BstMBI	GATC	3 cut(s)	600, 841, 976
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 260, 1018
BstNI	CCWGG	1 cut(s)	297
BstNSI	RCATGY	4 cut(s)	82, 95, 652, 885
BstSCI	CCNGG	1 cut(s)	295
BstSFI	CTRYAG	1 cut(s)	290
BstV1I	GCAGC	4 cut(s)	646, 872, 890, 1021
BstV2I	GAAGAC	1 cut(s)	961
BstXI	CCANNNNNNTGG	1 cut(s)	74
BsuI	GTATCC	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	655
BtsCI	GGATG	1 cut(s)	985
BtsI	GCAGTG	1 cut(s)	898
BtsIMutI	CAGTG	3 cut(s)	541, 898, 1047
Cac8I	GCNNGC	6 cut(s)	46, 80, 657, 706, 883, 1014
Cfr13I	GGNCC	1 cut(s)	896
Csp6I	GTAC	2 cut(s)	95, 734
CviAII	CATG	6 cut(s)	74, 79, 92, 446, 649, 882
CviQI	GTAC	2 cut(s)	95, 734
DdeI	CTNAG	2 cut(s)	255, 558
DpnI	GATC	3 cut(s)	602, 843, 978
DpnII	GATC	3 cut(s)	600, 841, 976
Eam1104I	CTCTTC	1 cut(s)	673
EarI	CTCTTC	1 cut(s)	673
Eco47I	GGWCC	1 cut(s)	896
Eco57I	CTGAAG	1 cut(s)	579
EcoRI	GAATTC	2 cut(s)	308, 1042
EcoRII	CCWGG	1 cut(s)	295
FaeI	CATG	6 cut(s)	77, 82, 95, 449, 652, 885
FaqI	GGGAC	3 cut(s)	49, 500, 1048
FatI	CATG	6 cut(s)	73, 78, 91, 445, 648, 881
FauNDI	CATATG	2 cut(s)	181, 727
Fnu4HI	GCNGC	5 cut(s)	660, 879, 886, 889, 1010
FokI	GGATG	1 cut(s)	972
Fsp4HI	GCNGC	5 cut(s)	660, 879, 886, 889, 1010
FspBI	CTAG	3 cut(s)	45, 440, 773
GluI	GCNGC	5 cut(s)	660, 879, 886, 889, 1010
GsuI	CTGGAG	1 cut(s)	360
HaeIII	GGCC	1 cut(s)	655
Hin1II	CATG	6 cut(s)	77, 82, 95, 449, 652, 885
HindIII	AAGCTT	1 cut(s)	813
HinfI	GANTC	3 cut(s)	116, 277, 1036
HphI	GGTGA	4 cut(s)	197, 388, 589, 836
Hpy166II	GTNNAC	2 cut(s)	325, 481
Hpy188I	TCNGA	5 cut(s)	314, 497, 828, 1041, 1065
Hpy188III	TCNNGA	4 cut(s)	242, 305, 471, 1027
Hpy8I	GTNNAC	2 cut(s)	325, 481
HpyAV	CCTTC	9 cut(s)	46, 59, 202, 395, 399, 502, 858, 863, 922
HpyCH4III	ACNGT	1 cut(s)	1051
HpyCH4IV	ACGT	1 cut(s)	62
HpyCH4V	TGCA	3 cut(s)	263, 332, 766
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 260, 1018
HpyF3I	CTNAG	2 cut(s)	255, 558
HpySE526I	ACGT	1 cut(s)	62
Hsp92II	CATG	6 cut(s)	77, 82, 95, 449, 652, 885
Kzo9I	GATC	3 cut(s)	600, 841, 976
LguI	GCTCTTC	1 cut(s)	673
LmnI	GCTCC	1 cut(s)	341
Lsp1109I	GCAGC	4 cut(s)	646, 872, 890, 1021
LweI	GCATC	2 cut(s)	118, 341
MaeI	CTAG	3 cut(s)	45, 440, 773
MaeII	ACGT	1 cut(s)	62
MaeIII	GTNAC	4 cut(s)	454, 935, 947, 1055
MalI	GATC	3 cut(s)	602, 843, 978
MboI	GATC	3 cut(s)	600, 841, 976
MboII	GAAGA	3 cut(s)	639, 690, 961
MhlI	GDGCHC	1 cut(s)	685
MlyI	GAGTC	1 cut(s)	1030
MmeI	TCCRAC	1 cut(s)	1013
MnlI	CCTC	5 cut(s)	217, 617, 706, 899, 926
MseI	TTAA	3 cut(s)	198, 363, 1087
MspR9I	CCNGG	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	3 cut(s)	41, 260, 1018
NdeI	CATATG	2 cut(s)	181, 727
NdeII	GATC	3 cut(s)	600, 841, 976
NheI	GCTAGC	1 cut(s)	44
NlaIII	CATG	6 cut(s)	77, 82, 95, 449, 652, 885
NmuCI	GTSAC	2 cut(s)	454, 947
NspI	RCATGY	4 cut(s)	82, 95, 652, 885
PaeI	GCATGC	2 cut(s)	82, 885
PciI	ACATGT	1 cut(s)	91
PciSI	GCTCTTC	1 cut(s)	673
PcsI	WCGNNNNNNNCGW	1 cut(s)	501
PfeI	GAWTC	2 cut(s)	116, 277
PkrI	GCNGC	5 cut(s)	661, 880, 887, 890, 1011
PleI	GAGTC	1 cut(s)	1030
PpsI	GAGTC	1 cut(s)	1030
PscI	ACATGT	1 cut(s)	91
PshBI	ATTAAT	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PspPI	GGNCC	1 cut(s)	896
RsaI	GTAC	2 cut(s)	96, 735
RsaNI	GTAC	2 cut(s)	95, 734
SapI	GCTCTTC	1 cut(s)	673
SaqAI	TTAA	3 cut(s)	198, 363, 1087
SatI	GCNGC	5 cut(s)	660, 879, 886, 889, 1010
Sau3AI	GATC	3 cut(s)	600, 841, 976
Sau96I	GGNCC	1 cut(s)	896
SchI	GAGTC	1 cut(s)	1030
ScrFI	CCNGG	1 cut(s)	297
SduI	GDGCHC	1 cut(s)	685
SfaNI	GCATC	2 cut(s)	118, 341
SfcI	CTRYAG	1 cut(s)	290
SinI	GGWCC	1 cut(s)	896
SphI	GCATGC	2 cut(s)	82, 885
SsiI	CCGC	1 cut(s)	888
SspMI	CTAG	3 cut(s)	45, 440, 773
StyD4I	CCNGG	1 cut(s)	295
TaaI	ACNGT	1 cut(s)	1051
TaiI	ACGT	1 cut(s)	65
TaqI	TCGA	2 cut(s)	796, 904
TauI	GCSGC	1 cut(s)	891
TfiI	GAWTC	2 cut(s)	116, 277
Tru1I	TTAA	3 cut(s)	198, 363, 1087
Tru9I	TTAA	3 cut(s)	198, 363, 1087
TscAI	CASTG	3 cut(s)	541, 898, 1054
TseFI	GTSAC	2 cut(s)	454, 947
TseI	GCWGC	4 cut(s)	659, 878, 885, 1009
Tsp45I	GTSAC	2 cut(s)	454, 947
TspDTI	ATGAA	5 cut(s)	94, 465, 533, 795, 974
TspGWI	ACGGA	1 cut(s)	690
TspRI	CASTG	3 cut(s)	541, 898, 1054
VpaK11BI	GGWCC	1 cut(s)	896
VspI	ATTAAT	1 cut(s)	363
XapI	RAATTY	6 cut(s)	169, 308, 403, 529, 631, 1042
XceI	RCATGY	4 cut(s)	82, 95, 652, 885
XspI	CTAG	3 cut(s)	45, 440, 773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.