Rmu_sc0006302.1_g000003

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006302.1
Physical Location & Seq
Reverse (-)
13681 .. 17815
4135 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006302.1_g000003.1.cds

Sequence Viewer

Length: 990 bp
atgcttgcatatggtgttccagctgattctcttgatgaatacttaaaaattggtgagtccacagcaattagatgcatgaaaaatttttgtcgggctattgtagagatatttggagagcaatctctcagaaaaccaacagtcattgatgttttaagactcattcatattggtgaagaacgtgggttttcaggaatgttaggaagcttagattgcatgcattggaggtggaaaaattatccatcaggtggaatgttaggaagcttagactgcagggctgggggtctcatggtttgcctcagtgcagcaagcttgttctcccaccaccgcaggctgaatgagaggctggaacttcgtgccaccctagaaattgacaaggagagatatgagatggagacacaggcagggcagttgaggaggacgcagcaggctgtcaaagacctggaccgcaaccactggttttgggtgttcaagcctaggtcgccaatggccaacccgccaccgcttaaggaggaggaggaggctactgctgcagctccagcgattccggaaatatacaagaaaggaggaaggaagtttgggtttttaagcttgggaccaattggttgtcacccagctttgctagcatttcggccagaaaaaataggattttgcatggaagaactcacagaagaagcacaaatacacaataaggcaattttgaaagtcctccatgcgctagagatcaagctgaaaggattcagatattcgtacttggacttttatacttccatgagtgaaggattgaataacccaacaaaatacgagccattaactatggaggataggggccagagaaagagtatgaactatgtgacaatcctaaggactgtgttcttcgatggcggtcatcctacagagttctttaaccagcaattttccaagctaatgtggagtggaaattccaatgtcacatggccttgcaatattcaagaactatttggaactctttag

Protein Analysis

329

Amino Acids

37.58

Weight (kDa)

8.06

Isoelectric Point (pI)

48.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 245
AccIII TCCGGA 1 cut(s) 544
AciI CCGC 5 cut(s) 325, 445, 494, 500, 882
AcoI YGGCCR 2 cut(s) 486, 629
AcsI RAATTY 2 cut(s) 82, 937
AfaI GTAC 1 cut(s) 749
AfiI CCNNNNNNNGG 1 cut(s) 245
AflII CTTAAG 1 cut(s) 503
AgsI TTSAA 4 cut(s) 469, 700, 784, 968
AjnI CCWGG 1 cut(s) 438
AluBI AGCT 9 cut(s) 23, 204, 261, 309, 533, 588, 614, 727, 922
AluI AGCT 9 cut(s) 23, 204, 261, 309, 533, 588, 614, 727, 922
Alw26I GTCTC 2 cut(s) 287, 386
Aor13HI TCCGGA 1 cut(s) 544
AoxI GGCC 4 cut(s) 486, 629, 826, 953
ApeKI GCWGC 4 cut(s) 302, 421, 527, 530
ApoI RAATTY 2 cut(s) 82, 937
Asp700I GAANNNNTTC 1 cut(s) 734
AspA2I CCTAGG 1 cut(s) 473
AspLEI GCGC 1 cut(s) 715
AspS9I GGNCC 3 cut(s) 442, 593, 826
AsuHPI GGTGA 3 cut(s) 65, 182, 599
AsuNHI GCTAGC 1 cut(s) 619
AvaII GGWCC 2 cut(s) 442, 593
AvrII CCTAGG 1 cut(s) 473
AxyI CCTNAGG 1 cut(s) 860
BalI TGGCCA 1 cut(s) 488
BarI GAAGNNNNNNTAC 2 cut(s) 663, 695
BbvI GCAGC 4 cut(s) 314, 433, 514, 542
BccI CCATC 3 cut(s) 247, 382, 872
BciT130I CCWGG 1 cut(s) 440
BcoDI GTCTC 2 cut(s) 287, 386
BfaI CTAG 4 cut(s) 362, 474, 620, 716
BfmI CTRYAG 3 cut(s) 268, 528, 891
BfrI CTTAAG 1 cut(s) 503
BisI GCNGC 4 cut(s) 303, 422, 528, 531
BlnI CCTAGG 1 cut(s) 473
BlsI GCNGC 4 cut(s) 304, 423, 529, 532
Bme1390I CCNGG 1 cut(s) 440
Bme18I GGWCC 2 cut(s) 442, 593
BmgT120I GGNCC 3 cut(s) 442, 593, 826
BmiI GGNNCC 2 cut(s) 594, 827
BmrFI CCNGG 1 cut(s) 440
BmsI GCATC 1 cut(s) 62
BmtI GCTAGC 1 cut(s) 623
BpmI CTGGAG 1 cut(s) 519
BsaI GGTCTC 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 473
BsaWI WCCGGW 1 cut(s) 544
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse1I ACTGG 1 cut(s) 458
Bse21I CCTNAGG 1 cut(s) 860
BseAI TCCGGA 1 cut(s) 544
BseBI CCWGG 1 cut(s) 440
BseDI CCNNGG 1 cut(s) 473
BseGI GGATG 1 cut(s) 886
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMII CTCAG 2 cut(s) 139, 310
BseNI ACTGG 1 cut(s) 458
BseRI GAGGAG 4 cut(s) 427, 524, 527, 530
BseXI GCAGC 4 cut(s) 314, 433, 514, 542
BseYI CCCAGC 2 cut(s) 275, 610
BsgI GTGCAG 1 cut(s) 321
BshFI GGCC 4 cut(s) 488, 631, 828, 955
BsiSI CCGG 1 cut(s) 545
BslFI GGGAC 1 cut(s) 606
BslI CCNNNNNNNGG 1 cut(s) 245
BsmAI GTCTC 2 cut(s) 287, 386
BsmFI GGGAC 1 cut(s) 606
BsnI GGCC 4 cut(s) 488, 631, 828, 955
Bso31I GGTCTC 1 cut(s) 287
Bsp13I TCCGGA 1 cut(s) 544
Bsp143I GATC 1 cut(s) 720
BspACI CCGC 5 cut(s) 325, 445, 494, 500, 882
BspANI GGCC 4 cut(s) 488, 631, 828, 955
BspCNI CTCAG 2 cut(s) 138, 309
BspEI TCCGGA 1 cut(s) 544
BspLI GGNNCC 2 cut(s) 594, 827
BspMAI CTGCAG 2 cut(s) 272, 532
BspOI GCTAGC 1 cut(s) 623
BspTI CTTAAG 1 cut(s) 503
BspTNI GGTCTC 1 cut(s) 287
BsrI ACTGG 1 cut(s) 458
BssECI CCNNGG 1 cut(s) 473
BssMI GATC 1 cut(s) 720
BssT1I CCWWGG 1 cut(s) 473
Bst2UI CCWGG 1 cut(s) 440
Bst4CI ACNGT 2 cut(s) 139, 868
BstAFI CTTAAG 1 cut(s) 503
BstC8I GCNNGC 6 cut(s) 6, 215, 307, 329, 426, 621
BstDEI CTNAG 5 cut(s) 125, 205, 262, 296, 860
BstF5I GGATG 1 cut(s) 886
BstHHI GCGC 1 cut(s) 715
BstKTI GATC 1 cut(s) 723
BstMAI GTCTC 2 cut(s) 287, 386
BstMBI GATC 1 cut(s) 720
BstMWI GCNNNNNNNGC 6 cut(s) 210, 267, 478, 527, 536, 620
BstNI CCWGG 1 cut(s) 440
BstNSI RCATGY 1 cut(s) 217
BstSCI CCNGG 1 cut(s) 438
BstSFI CTRYAG 3 cut(s) 268, 528, 891
BstV1I GCAGC 4 cut(s) 314, 433, 514, 542
Bsu36I CCTNAGG 1 cut(s) 860
BsuRI GGCC 4 cut(s) 488, 631, 828, 955
BtsCI GGATG 1 cut(s) 886
BtsIMutI CAGTG 2 cut(s) 304, 451
Cac8I GCNNGC 6 cut(s) 6, 215, 307, 329, 426, 621
CfoI GCGC 1 cut(s) 715
Cfr13I GGNCC 3 cut(s) 442, 593, 826
CseI GACGC 1 cut(s) 427
Csp6I GTAC 1 cut(s) 748
CspCI CAANNNNNGTGG 2 cut(s) 440, 475
CviAII CATG 7 cut(s) 76, 214, 286, 652, 710, 769, 951
CviQI GTAC 1 cut(s) 748
DdeI CTNAG 5 cut(s) 125, 205, 262, 296, 860
DpnI GATC 1 cut(s) 722
DpnII GATC 1 cut(s) 720
EaeI YGGCCR 2 cut(s) 486, 629
Eco130I CCWWGG 1 cut(s) 473
Eco31I GGTCTC 1 cut(s) 287
Eco47I GGWCC 2 cut(s) 442, 593
Eco81I CCTNAGG 1 cut(s) 860
EcoRII CCWGG 1 cut(s) 438
EcoT14I CCWWGG 1 cut(s) 473
EcoT22I ATGCAT 2 cut(s) 77, 219
ErhI CCWWGG 1 cut(s) 473
FaeI CATG 7 cut(s) 79, 217, 289, 655, 713, 772, 954
FaqI GGGAC 1 cut(s) 606
FatI CATG 7 cut(s) 75, 213, 285, 651, 709, 768, 950
FauI CCCGC 1 cut(s) 501
FauNDI CATATG 1 cut(s) 10
Fnu4HI GCNGC 4 cut(s) 303, 422, 528, 531
FokI GGATG 1 cut(s) 873
Fsp4HI GCNGC 4 cut(s) 303, 422, 528, 531
FspBI CTAG 4 cut(s) 362, 474, 620, 716
GlaI GCGC 1 cut(s) 714
GluI GCNGC 4 cut(s) 303, 422, 528, 531
GsaI CCCAGC 2 cut(s) 279, 614
GsuI CTGGAG 1 cut(s) 519
HaeIII GGCC 4 cut(s) 488, 631, 828, 955
HapII CCGG 1 cut(s) 545
HgaI GACGC 1 cut(s) 427
HhaI GCGC 1 cut(s) 715
Hin1II CATG 7 cut(s) 79, 217, 289, 655, 713, 772, 954
Hin6I GCGC 1 cut(s) 713
HinP1I GCGC 1 cut(s) 713
HindIII AAGCTT 4 cut(s) 202, 259, 307, 586
HinfI GANTC 5 cut(s) 26, 56, 156, 541, 735
HpaII CCGG 1 cut(s) 545
HphI GGTGA 3 cut(s) 65, 182, 599
Hpy166II GTNNAC 1 cut(s) 60
Hpy188I TCNGA 2 cut(s) 128, 740
Hpy188III TCNNGA 4 cut(s) 32, 189, 545, 968
Hpy8I GTNNAC 1 cut(s) 60
HpyAV CCTTC 2 cut(s) 561, 770
HpyCH4III ACNGT 2 cut(s) 139, 868
HpyCH4IV ACGT 1 cut(s) 178
HpyCH4V TGCA 9 cut(s) 8, 75, 213, 217, 270, 302, 530, 651, 960
HpyF10VI GCNNNNNNNGC 6 cut(s) 210, 267, 478, 527, 536, 620
HpyF3I CTNAG 5 cut(s) 125, 205, 262, 296, 860
HpySE526I ACGT 1 cut(s) 178
Hsp92II CATG 7 cut(s) 79, 217, 289, 655, 713, 772, 954
HspAI GCGC 1 cut(s) 713
Kpn2I TCCGGA 1 cut(s) 544
Kzo9I GATC 1 cut(s) 720
LmnI GCTCC 1 cut(s) 538
Lsp1109I GCAGC 4 cut(s) 314, 433, 514, 542
LweI GCATC 1 cut(s) 62
MaeI CTAG 4 cut(s) 362, 474, 620, 716
MaeII ACGT 1 cut(s) 178
MaeIII GTNAC 3 cut(s) 605, 850, 946
MalI GATC 1 cut(s) 722
MboI GATC 1 cut(s) 720
MboII GAAGA 4 cut(s) 185, 668, 680, 865
MfeI CAATTG 1 cut(s) 597
MlsI TGGCCA 1 cut(s) 488
MluCI AATT 9 cut(s) 48, 66, 82, 232, 366, 597, 693, 911, 937
MluNI TGGCCA 1 cut(s) 488
MlyI GAGTC 2 cut(s) 65, 150
Mox20I TGGCCA 1 cut(s) 488
Mph1103I ATGCAT 2 cut(s) 77, 219
MroI TCCGGA 1 cut(s) 544
MroXI GAANNNNTTC 1 cut(s) 734
MscI TGGCCA 1 cut(s) 488
MseI TTAA 6 cut(s) 44, 152, 504, 584, 809, 903
MslI CAYNNNNRTG 1 cut(s) 168
Msp20I TGGCCA 1 cut(s) 488
MspA1I CMGCKG 1 cut(s) 23
MspCI CTTAAG 1 cut(s) 503
MspI CCGG 1 cut(s) 545
MspR9I CCNGG 1 cut(s) 440
MunI CAATTG 1 cut(s) 597
MvaI CCWGG 1 cut(s) 440
MwoI GCNNNNNNNGC 6 cut(s) 210, 267, 478, 527, 536, 620
NdeI CATATG 1 cut(s) 10
NdeII GATC 1 cut(s) 720
NheI GCTAGC 1 cut(s) 619
NlaIII CATG 7 cut(s) 79, 217, 289, 655, 713, 772, 954
NlaIV GGNNCC 2 cut(s) 594, 827
NmuCI GTSAC 3 cut(s) 605, 850, 946
NsiI ATGCAT 2 cut(s) 77, 219
NspI RCATGY 1 cut(s) 217
PaeI GCATGC 1 cut(s) 217
PdmI GAANNNNTTC 1 cut(s) 734
PfeI GAWTC 3 cut(s) 26, 541, 735
PflMI CCANNNNNTGG 1 cut(s) 245
PkrI GCNGC 4 cut(s) 304, 423, 529, 532
PleI GAGTC 2 cut(s) 64, 150
PpsI GAGTC 2 cut(s) 64, 150
Psp6I CCWGG 1 cut(s) 438
PspFI CCCAGC 2 cut(s) 275, 610
PspGI CCWGG 1 cut(s) 438
PspN4I GGNNCC 2 cut(s) 594, 827
PspPI GGNCC 3 cut(s) 442, 593, 826
PstI CTGCAG 2 cut(s) 272, 532
PvuII CAGCTG 1 cut(s) 23
RsaI GTAC 1 cut(s) 749
RsaNI GTAC 1 cut(s) 748
RseI CAYNNNNRTG 1 cut(s) 168
SaqAI TTAA 6 cut(s) 44, 152, 504, 584, 809, 903
SatI GCNGC 4 cut(s) 303, 422, 528, 531
Sau3AI GATC 1 cut(s) 720
Sau96I GGNCC 3 cut(s) 442, 593, 826
SchI GAGTC 2 cut(s) 65, 150
ScrFI CCNGG 1 cut(s) 440
SfaNI GCATC 1 cut(s) 62
SfcI CTRYAG 3 cut(s) 268, 528, 891
SinI GGWCC 2 cut(s) 442, 593
SmiMI CAYNNNNRTG 1 cut(s) 168
SmlI CTYRAG 1 cut(s) 503
SmoI CTYRAG 1 cut(s) 503
SphI GCATGC 1 cut(s) 217
Sse9I AATT 9 cut(s) 48, 66, 82, 232, 366, 597, 693, 911, 937
SsiI CCGC 5 cut(s) 325, 445, 494, 500, 882
SspI AATATT 1 cut(s) 964
SspMI CTAG 4 cut(s) 362, 474, 620, 716
StyD4I CCNGG 1 cut(s) 438
StyI CCWWGG 1 cut(s) 473
TaaI ACNGT 2 cut(s) 139, 868
TaiI ACGT 1 cut(s) 181
TaqI TCGA 1 cut(s) 876
TasI AATT 9 cut(s) 48, 66, 82, 232, 366, 597, 693, 911, 937
TfiI GAWTC 3 cut(s) 26, 541, 735
Tru1I TTAA 6 cut(s) 44, 152, 504, 584, 809, 903
Tru9I TTAA 6 cut(s) 44, 152, 504, 584, 809, 903
TscAI CASTG 2 cut(s) 304, 458
TseFI GTSAC 3 cut(s) 605, 850, 946
TseI GCWGC 4 cut(s) 302, 421, 527, 530
Tsp45I GTSAC 3 cut(s) 605, 850, 946
TspDTI ATGAA 4 cut(s) 51, 92, 152, 857
TspRI CASTG 2 cut(s) 304, 458
Van91I CCANNNNNTGG 1 cut(s) 245
Vha464I CTTAAG 1 cut(s) 503
VpaK11BI GGWCC 2 cut(s) 442, 593
XapI RAATTY 2 cut(s) 82, 937
XceI RCATGY 1 cut(s) 217
XmaJI CCTAGG 1 cut(s) 473
XmnI GAANNNNTTC 1 cut(s) 734
XspI CTAG 4 cut(s) 362, 474, 620, 716
Zsp2I ATGCAT 2 cut(s) 77, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.