Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 89 |
| Acc16I | TGCGCA | 1 cut(s) | 988 |
| Acc36I | ACCTGC | 1 cut(s) | 89 |
| AccB1I | GGYRCC | 1 cut(s) | 1569 |
| AccI | GTMKAC | 1 cut(s) | 684 |
| AciI | CCGC | 2 cut(s) | 878, 1284 |
| AclWI | GGATC | 4 cut(s) | 1156, 1169, 1266, 1466 |
| AcoI | YGGCCR | 1 cut(s) | 1239 |
| AcsI | RAATTY | 3 cut(s) | 233, 453, 1699 |
| AcuI | CTGAAG | 2 cut(s) | 372, 1335 |
| AcvI | CACGTG | 1 cut(s) | 554 |
| AfaI | GTAC | 8 cut(s) | 488, 508, 520, 651, 657, 1304, 1380, 1687 |
| AflIII | ACRYGT | 1 cut(s) | 327 |
| AgsI | TTSAA | 9 cut(s) | 316, 379, 728, 808, 1133, 1213, 1419, 1565, 1695 |
| AjiI | CACGTC | 1 cut(s) | 563 |
| AjnI | CCWGG | 6 cut(s) | 39, 169, 442, 636, 1286, 1325 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 754, 786 |
| AluBI | AGCT | 6 cut(s) | 217, 310, 392, 724, 1007, 1368 |
| AluI | AGCT | 6 cut(s) | 217, 310, 392, 724, 1007, 1368 |
| Alw21I | GWGCWC | 2 cut(s) | 754, 1009 |
| Alw26I | GTCTC | 3 cut(s) | 430, 1528, 1556 |
| AlwI | GGATC | 4 cut(s) | 1156, 1169, 1266, 1466 |
| Ama87I | CYCGRG | 1 cut(s) | 1727 |
| AoxI | GGCC | 4 cut(s) | 109, 439, 820, 1239 |
| ApeKI | GCWGC | 3 cut(s) | 4, 217, 668 |
| ApoI | RAATTY | 3 cut(s) | 233, 453, 1699 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 207, 856, 1722 |
| AspLEI | GCGC | 1 cut(s) | 989 |
| AspS9I | GGNCC | 3 cut(s) | 110, 440, 1664 |
| AsuC2I | CCSGG | 1 cut(s) | 113 |
| AsuHPI | GGTGA | 4 cut(s) | 316, 425, 892, 1612 |
| AvaI | CYCGRG | 1 cut(s) | 1727 |
| AvaII | GGWCC | 1 cut(s) | 1664 |
| BalI | TGGCCA | 1 cut(s) | 1241 |
| BamHI | GGATCC | 1 cut(s) | 1161 |
| BanI | GGYRCC | 1 cut(s) | 1569 |
| BanII | GRGCYC | 1 cut(s) | 1009 |
| BbrPI | CACGTG | 1 cut(s) | 554 |
| Bbv12I | GWGCWC | 2 cut(s) | 754, 1009 |
| BbvI | GCAGC | 3 cut(s) | 16, 204, 655 |
| BccI | CCATC | 2 cut(s) | 282, 986 |
| BciT130I | CCWGG | 6 cut(s) | 41, 171, 444, 638, 1288, 1327 |
| BciVI | GTATCC | 2 cut(s) | 177, 193 |
| BcnI | CCSGG | 1 cut(s) | 113 |
| BcoDI | GTCTC | 3 cut(s) | 430, 1528, 1556 |
| BfaI | CTAG | 3 cut(s) | 1199, 1472, 1715 |
| BfmI | CTRYAG | 5 cut(s) | 82, 669, 685, 1363, 1575 |
| BfuAI | ACCTGC | 1 cut(s) | 89 |
| BfuI | GTATCC | 2 cut(s) | 177, 193 |
| BisI | GCNGC | 3 cut(s) | 5, 218, 669 |
| BlsI | GCNGC | 3 cut(s) | 6, 219, 670 |
| Bme1390I | CCNGG | 7 cut(s) | 41, 113, 171, 444, 638, 1288, 1327 |
| Bme18I | GGWCC | 1 cut(s) | 1664 |
| BmeT110I | CYCGRG | 1 cut(s) | 1727 |
| BmgBI | CACGTC | 1 cut(s) | 563 |
| BmgT120I | GGNCC | 3 cut(s) | 110, 440, 1664 |
| BmiI | GGNNCC | 4 cut(s) | 829, 1163, 1571, 1665 |
| BmrFI | CCNGG | 7 cut(s) | 41, 113, 171, 444, 638, 1288, 1327 |
| BmrI | ACTGGG | 1 cut(s) | 221 |
| BmsI | GCATC | 4 cut(s) | 504, 641, 1139, 1507 |
| BmuI | ACTGGG | 1 cut(s) | 221 |
| BpmI | CTGGAG | 1 cut(s) | 1309 |
| BpuEI | CTTGAG | 3 cut(s) | 233, 454, 1406 |
| BpuMI | CCSGG | 1 cut(s) | 113 |
| BsaAI | YACGTR | 1 cut(s) | 554 |
| BsaI | GGTCTC | 1 cut(s) | 1556 |
| BsaJI | CCNNGG | 9 cut(s) | 170, 442, 636, 637, 823, 900, 1144, 1254, 1287 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1624, 1654 |
| Bse1I | ACTGG | 1 cut(s) | 227 |
| Bse3DI | GCAATG | 2 cut(s) | 196, 1305 |
| BseBI | CCWGG | 6 cut(s) | 41, 171, 444, 638, 1288, 1327 |
| BseDI | CCNNGG | 9 cut(s) | 170, 442, 636, 637, 823, 900, 1144, 1254, 1287 |
| BseGI | GGATG | 4 cut(s) | 15, 50, 632, 1154 |
| BseMI | GCAATG | 2 cut(s) | 196, 1305 |
| BseMII | CTCAG | 1 cut(s) | 1673 |
| BseNI | ACTGG | 1 cut(s) | 227 |
| BseXI | GCAGC | 3 cut(s) | 16, 204, 655 |
| BsgI | GTGCAG | 1 cut(s) | 1124 |
| BshFI | GGCC | 4 cut(s) | 111, 441, 822, 1241 |
| BshNI | GGYRCC | 1 cut(s) | 1569 |
| BsiHKAI | GWGCWC | 2 cut(s) | 754, 1009 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1727 |
| BsiSI | CCGG | 1 cut(s) | 113 |
| BslFI | GGGAC | 2 cut(s) | 850, 957 |
| BsmAI | GTCTC | 3 cut(s) | 430, 1528, 1556 |
| BsmFI | GGGAC | 2 cut(s) | 850, 957 |
| BsmI | GAATGC | 1 cut(s) | 1560 |
| BsnI | GGCC | 4 cut(s) | 111, 441, 822, 1241 |
| Bso31I | GGTCTC | 1 cut(s) | 1556 |
| BsoBI | CYCGRG | 1 cut(s) | 1727 |
| Bsp1286I | GDGCHC | 2 cut(s) | 754, 1009 |
| Bsp1407I | TGTACA | 1 cut(s) | 506 |
| Bsp143I | GATC | 4 cut(s) | 1161, 1258, 1458, 1579 |
| BspACI | CCGC | 2 cut(s) | 878, 1284 |
| BspANI | GGCC | 4 cut(s) | 111, 441, 822, 1241 |
| BspCNI | CTCAG | 1 cut(s) | 1672 |
| BspLI | GGNNCC | 4 cut(s) | 829, 1163, 1571, 1665 |
| BspMAI | CTGCAG | 3 cut(s) | 86, 673, 1579 |
| BspMI | ACCTGC | 1 cut(s) | 89 |
| BspPI | GGATC | 4 cut(s) | 1156, 1169, 1266, 1466 |
| BspT107I | GGYRCC | 1 cut(s) | 1569 |
| BspTNI | GGTCTC | 1 cut(s) | 1556 |
| BsrDI | GCAATG | 2 cut(s) | 196, 1305 |
| BsrGI | TGTACA | 1 cut(s) | 506 |
| BsrI | ACTGG | 1 cut(s) | 227 |
| BssECI | CCNNGG | 9 cut(s) | 170, 442, 636, 637, 823, 900, 1144, 1254, 1287 |
| BssMI | GATC | 4 cut(s) | 1161, 1258, 1458, 1579 |
| BssT1I | CCWWGG | 4 cut(s) | 823, 900, 1144, 1254 |
| Bst2UI | CCWGG | 6 cut(s) | 41, 171, 444, 638, 1288, 1327 |
| Bst4CI | ACNGT | 2 cut(s) | 689, 841 |
| Bst6I | CTCTTC | 1 cut(s) | 909 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 629 |
| BstAUI | TGTACA | 1 cut(s) | 506 |
| BstBAI | YACGTR | 1 cut(s) | 554 |
| BstC8I | GCNNGC | 1 cut(s) | 299 |
| BstDEI | CTNAG | 2 cut(s) | 352, 1659 |
| BstF5I | GGATG | 4 cut(s) | 15, 50, 632, 1154 |
| BstHHI | GCGC | 1 cut(s) | 989 |
| BstKTI | GATC | 4 cut(s) | 1164, 1261, 1461, 1582 |
| BstMAI | GTCTC | 3 cut(s) | 430, 1528, 1556 |
| BstMBI | GATC | 4 cut(s) | 1161, 1258, 1458, 1579 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 307, 438, 629, 1526 |
| BstNI | CCWGG | 6 cut(s) | 41, 171, 444, 638, 1288, 1327 |
| BstNSI | RCATGY | 2 cut(s) | 331, 594 |
| BstSCI | CCNGG | 7 cut(s) | 39, 111, 169, 442, 636, 1286, 1325 |
| BstSFI | CTRYAG | 5 cut(s) | 82, 669, 685, 1363, 1575 |
| BstV1I | GCAGC | 3 cut(s) | 16, 204, 655 |
| BstX2I | RGATCY | 2 cut(s) | 1161, 1458 |
| BstYI | RGATCY | 2 cut(s) | 1161, 1458 |
| BsuI | GTATCC | 2 cut(s) | 177, 193 |
| BsuRI | GGCC | 4 cut(s) | 111, 441, 822, 1241 |
| BtrI | CACGTC | 1 cut(s) | 563 |
| BtsCI | GGATG | 4 cut(s) | 15, 50, 632, 1154 |
| BveI | ACCTGC | 1 cut(s) | 89 |
| Cac8I | GCNNGC | 1 cut(s) | 299 |
| CfoI | GCGC | 1 cut(s) | 989 |
| Cfr13I | GGNCC | 3 cut(s) | 110, 440, 1664 |
| Csp6I | GTAC | 8 cut(s) | 487, 507, 519, 650, 656, 1303, 1379, 1686 |
| CviAII | CATG | 4 cut(s) | 328, 591, 956, 1636 |
| CviQI | GTAC | 8 cut(s) | 487, 507, 519, 650, 656, 1303, 1379, 1686 |
| DdeI | CTNAG | 2 cut(s) | 352, 1659 |
| DpnI | GATC | 4 cut(s) | 1163, 1260, 1460, 1581 |
| DpnII | GATC | 4 cut(s) | 1161, 1258, 1458, 1579 |
| DraI | TTTAAA | 1 cut(s) | 1704 |
| EaeI | YGGCCR | 1 cut(s) | 1239 |
| Eam1104I | CTCTTC | 1 cut(s) | 909 |
| EarI | CTCTTC | 1 cut(s) | 909 |
| Ecl136II | GAGCTC | 1 cut(s) | 1007 |
| Eco130I | CCWWGG | 4 cut(s) | 823, 900, 1144, 1254 |
| Eco24I | GRGCYC | 1 cut(s) | 1009 |
| Eco31I | GGTCTC | 1 cut(s) | 1556 |
| Eco32I | GATATC | 1 cut(s) | 1177 |
| Eco47I | GGWCC | 1 cut(s) | 1664 |
| Eco53kI | GAGCTC | 1 cut(s) | 1007 |
| Eco57I | CTGAAG | 2 cut(s) | 372, 1335 |
| Eco72I | CACGTG | 1 cut(s) | 554 |
| Eco88I | CYCGRG | 1 cut(s) | 1727 |
| EcoICRI | GAGCTC | 1 cut(s) | 1007 |
| EcoRII | CCWGG | 6 cut(s) | 39, 169, 442, 636, 1286, 1325 |
| EcoRV | GATATC | 1 cut(s) | 1177 |
| EcoT14I | CCWWGG | 4 cut(s) | 823, 900, 1144, 1254 |
| EcoT38I | GRGCYC | 1 cut(s) | 1009 |
| ErhI | CCWWGG | 4 cut(s) | 823, 900, 1144, 1254 |
| FaeI | CATG | 4 cut(s) | 331, 594, 959, 1639 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1675, 1707 |
| FaqI | GGGAC | 2 cut(s) | 850, 957 |
| FatI | CATG | 4 cut(s) | 327, 590, 955, 1635 |
| FauNDI | CATATG | 1 cut(s) | 409 |
| FblI | GTMKAC | 1 cut(s) | 684 |
| Fnu4HI | GCNGC | 3 cut(s) | 5, 218, 669 |
| FokI | GGATG | 4 cut(s) | 2, 37, 619, 1161 |
| FriOI | GRGCYC | 1 cut(s) | 1009 |
| Fsp4HI | GCNGC | 3 cut(s) | 5, 218, 669 |
| FspBI | CTAG | 3 cut(s) | 1199, 1472, 1715 |
| FspI | TGCGCA | 1 cut(s) | 988 |
| GlaI | GCGC | 1 cut(s) | 988 |
| GluI | GCNGC | 3 cut(s) | 5, 218, 669 |
| GsuI | CTGGAG | 1 cut(s) | 1309 |
| HaeIII | GGCC | 4 cut(s) | 111, 441, 822, 1241 |
| HapII | CCGG | 1 cut(s) | 113 |
| HhaI | GCGC | 1 cut(s) | 989 |
| Hin1II | CATG | 4 cut(s) | 331, 594, 959, 1639 |
| Hin6I | GCGC | 1 cut(s) | 987 |
| HinP1I | GCGC | 1 cut(s) | 987 |
| HindIII | AAGCTT | 1 cut(s) | 722 |
| HinfI | GANTC | 7 cut(s) | 123, 262, 401, 557, 712, 981, 1603 |
| HpaII | CCGG | 1 cut(s) | 113 |
| HphI | GGTGA | 4 cut(s) | 316, 425, 892, 1612 |
| Hpy166II | GTNNAC | 7 cut(s) | 416, 489, 605, 685, 1037, 1444, 1688 |
| Hpy188I | TCNGA | 6 cut(s) | 122, 694, 1228, 1337, 1357, 1608 |
| Hpy188III | TCNNGA | 4 cut(s) | 212, 1472, 1695, 1727 |
| Hpy8I | GTNNAC | 7 cut(s) | 416, 489, 605, 685, 1037, 1444, 1688 |
| HpyAV | CCTTC | 7 cut(s) | 352, 506, 590, 1505, 1596, 1613, 1701 |
| HpyCH4III | ACNGT | 2 cut(s) | 689, 841 |
| HpyCH4IV | ACGT | 2 cut(s) | 553, 562 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 307, 438, 629, 1526 |
| HpyF3I | CTNAG | 2 cut(s) | 352, 1659 |
| HpySE526I | ACGT | 2 cut(s) | 553, 562 |
| Hsp92II | CATG | 4 cut(s) | 331, 594, 959, 1639 |
| HspAI | GCGC | 1 cut(s) | 987 |
| Kzo9I | GATC | 4 cut(s) | 1161, 1258, 1458, 1579 |
| LmnI | GCTCC | 1 cut(s) | 827 |
| Lsp1109I | GCAGC | 3 cut(s) | 16, 204, 655 |
| LweI | GCATC | 4 cut(s) | 504, 641, 1139, 1507 |
| MaeI | CTAG | 3 cut(s) | 1199, 1472, 1715 |
| MaeII | ACGT | 2 cut(s) | 553, 562 |
| MalI | GATC | 4 cut(s) | 1163, 1260, 1460, 1581 |
| MboI | GATC | 4 cut(s) | 1161, 1258, 1458, 1579 |
| MboII | GAAGA | 7 cut(s) | 28, 378, 926, 1460, 1487, 1520, 1628 |
| MfeI | CAATTG | 1 cut(s) | 379 |
| MflI | RGATCY | 2 cut(s) | 1161, 1458 |
| MhlI | GDGCHC | 2 cut(s) | 754, 1009 |
| MlsI | TGGCCA | 1 cut(s) | 1241 |
| MluNI | TGGCCA | 1 cut(s) | 1241 |
| MmeI | TCCRAC | 3 cut(s) | 958, 1593, 1735 |
| MnlI | CCTC | 8 cut(s) | 146, 593, 733, 783, 899, 1391, 1650, 1666 |
| Mox20I | TGGCCA | 1 cut(s) | 1241 |
| MroXI | GAANNNNTTC | 3 cut(s) | 207, 856, 1722 |
| MscI | TGGCCA | 1 cut(s) | 1241 |
| MseI | TTAA | 6 cut(s) | 479, 719, 786, 846, 1631, 1703 |
| MslI | CAYNNNNRTG | 2 cut(s) | 279, 960 |
| Msp20I | TGGCCA | 1 cut(s) | 1241 |
| MspA1I | CMGCKG | 1 cut(s) | 392 |
| MspI | CCGG | 1 cut(s) | 113 |
| MspR9I | CCNGG | 7 cut(s) | 41, 113, 171, 444, 638, 1288, 1327 |
| MunI | CAATTG | 1 cut(s) | 379 |
| Mva1269I | GAATGC | 1 cut(s) | 1560 |
| MvaI | CCWGG | 6 cut(s) | 41, 171, 444, 638, 1288, 1327 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 307, 438, 629, 1526 |
| NciI | CCSGG | 1 cut(s) | 113 |
| NdeI | CATATG | 1 cut(s) | 409 |
| NdeII | GATC | 4 cut(s) | 1161, 1258, 1458, 1579 |
| NlaIII | CATG | 4 cut(s) | 331, 594, 959, 1639 |
| NlaIV | GGNNCC | 4 cut(s) | 829, 1163, 1571, 1665 |
| NsbI | TGCGCA | 1 cut(s) | 988 |
| NspI | RCATGY | 2 cut(s) | 331, 594 |
| PaqCI | CACCTGC | 1 cut(s) | 89 |
| PasI | CCCWGGG | 1 cut(s) | 637 |
| PciI | ACATGT | 1 cut(s) | 327 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 559 |
| PctI | GAATGC | 1 cut(s) | 1560 |
| PdmI | GAANNNNTTC | 3 cut(s) | 207, 856, 1722 |
| PfeI | GAWTC | 7 cut(s) | 123, 262, 401, 557, 712, 981, 1603 |
| PfoI | TCCNGGA | 1 cut(s) | 1325 |
| PkrI | GCNGC | 3 cut(s) | 6, 219, 670 |
| PmaCI | CACGTG | 1 cut(s) | 554 |
| PmlI | CACGTG | 1 cut(s) | 554 |
| Ppu21I | YACGTR | 1 cut(s) | 554 |
| PscI | ACATGT | 1 cut(s) | 327 |
| Psp124BI | GAGCTC | 1 cut(s) | 1009 |
| Psp6I | CCWGG | 6 cut(s) | 39, 169, 442, 636, 1286, 1325 |
| PspCI | CACGTG | 1 cut(s) | 554 |
| PspGI | CCWGG | 6 cut(s) | 39, 169, 442, 636, 1286, 1325 |
| PspN4I | GGNNCC | 4 cut(s) | 829, 1163, 1571, 1665 |
| PspPI | GGNCC | 3 cut(s) | 110, 440, 1664 |
| PstI | CTGCAG | 3 cut(s) | 86, 673, 1579 |
| PsuI | RGATCY | 2 cut(s) | 1161, 1458 |
| PvuII | CAGCTG | 1 cut(s) | 392 |
| RsaI | GTAC | 8 cut(s) | 488, 508, 520, 651, 657, 1304, 1380, 1687 |
| RsaNI | GTAC | 8 cut(s) | 487, 507, 519, 650, 656, 1303, 1379, 1686 |
| RseI | CAYNNNNRTG | 2 cut(s) | 279, 960 |
| SacI | GAGCTC | 1 cut(s) | 1009 |
| SaqAI | TTAA | 6 cut(s) | 479, 719, 786, 846, 1631, 1703 |
| SatI | GCNGC | 3 cut(s) | 5, 218, 669 |
| Sau3AI | GATC | 4 cut(s) | 1161, 1258, 1458, 1579 |
| Sau96I | GGNCC | 3 cut(s) | 110, 440, 1664 |
| ScrFI | CCNGG | 7 cut(s) | 41, 113, 171, 444, 638, 1288, 1327 |
| SduI | GDGCHC | 2 cut(s) | 754, 1009 |
| SfaNI | GCATC | 4 cut(s) | 504, 641, 1139, 1507 |
| SfcI | CTRYAG | 5 cut(s) | 82, 669, 685, 1363, 1575 |
| SinI | GGWCC | 1 cut(s) | 1664 |
| SmiI | ATTTAAAT | 1 cut(s) | 1704 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 279, 960 |
| SmlI | CTYRAG | 3 cut(s) | 212, 433, 1385 |
| SmoI | CTYRAG | 3 cut(s) | 212, 433, 1385 |
| SsiI | CCGC | 2 cut(s) | 878, 1284 |
| SspI | AATATT | 1 cut(s) | 367 |
| SspMI | CTAG | 3 cut(s) | 1199, 1472, 1715 |
| SstI | GAGCTC | 1 cut(s) | 1009 |
| StyD4I | CCNGG | 7 cut(s) | 39, 111, 169, 442, 636, 1286, 1325 |
| StyI | CCWWGG | 4 cut(s) | 823, 900, 1144, 1254 |
| SwaI | ATTTAAAT | 1 cut(s) | 1704 |
| TaaI | ACNGT | 2 cut(s) | 689, 841 |
| TaiI | ACGT | 2 cut(s) | 556, 565 |
| TaqI | TCGA | 4 cut(s) | 243, 404, 483, 970 |
| TatI | WGTACW | 4 cut(s) | 486, 506, 649, 1685 |
| TfiI | GAWTC | 7 cut(s) | 123, 262, 401, 557, 712, 981, 1603 |
| Tru1I | TTAA | 6 cut(s) | 479, 719, 786, 846, 1631, 1703 |
| Tru9I | TTAA | 6 cut(s) | 479, 719, 786, 846, 1631, 1703 |
| TseI | GCWGC | 3 cut(s) | 4, 217, 668 |
| TspDTI | ATGAA | 9 cut(s) | 22, 207, 216, 516, 633, 942, 1039, 1044, 1452 |
| TspGWI | ACGGA | 1 cut(s) | 1174 |
| VpaK11BI | GGWCC | 1 cut(s) | 1664 |
| XapI | RAATTY | 3 cut(s) | 233, 453, 1699 |
| XbaI | TCTAGA | 1 cut(s) | 1471 |
| XceI | RCATGY | 2 cut(s) | 331, 594 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 830 |
| XmiI | GTMKAC | 1 cut(s) | 684 |
| XmnI | GAANNNNTTC | 3 cut(s) | 207, 856, 1722 |
| XspI | CTAG | 3 cut(s) | 1199, 1472, 1715 |