Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000452

Physical Location & Seq

Genomic Coordinates Reverse (-)

21418576 .. 21422553

Gene Structure 3978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0124800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1962 bp

ATGACTTCACTGACCGGTTTTCCGCTACTGCTGCAACAATTCAAGGCTCTGTTCAACAAGAACCTCCTCCTCGCATGGCGCAACAAGACCGCCACCTTTCTCCAGCTCCTCTCTCCCTTATTCTTCATCTTCCTCATCTTCTGCTTCTTCCAGAAGGCCTACGACGCTCAGACTCAGTCTTCCACTGCGTACCGGAGCGTCACCGATCCTCAGCCGCTGGTTTCGCTTCCGATCCCGCCCTGCGAGGACAAGTTCTCTATCAAAACGCCGTGCTATGATTTCGTGTGGAGCGGAGATCAGAGCCCTAGGATTCGGAGCGTTGTCGATGCCATCATGGCTAATAATCCCGGAAGGCCAATCCCGGCGACAAAGGTTAAATCGTTTAGAACCCCGGCTGAAGTAGATGAATGGCTGTATAAGAATCCTTTGTATTGCGCAGGAGCTTTGCATTTTGTGGAAAGAAATGCCACTGTGATTAGCTATGGCCTGCAGACTAATTCTACTTCTGTTGAAAAACAAGGGAAAACTGAGGATCCCACATTCAAATTTCAAATTCCACTTCAGATTGCTGCGGAGCGTGAGATTGGAGATTCAAAATTTAGCTGGGTTGTTGCATTCAAGGAATTTGCACACCCTGCAATGGAGAGGCCTTCTGCAATGGATAACATAGGACCAAGGTTTTTTTTCGCAGCTGCCATGTTTGGTTTTGTCTTTCAAATGACTTCTTTGATCACAGAGAAAGAACTTAAGCTGCGACAGGCAATGATAATGATGGGTCTTTATGATAGTGCATACTGGTTCTCATGGCTTGCATGGGAGGGAATTATTACACTACTCTCAGCTCTTTTCACAGTACTCTTTGGAATGATATTTCGGTTTAATTTTTTCTTAAACAACAGCTTTGCAGTCTTATTCCTTGTTTTCTATCTTTTCCAACTCAATATGATTGGTTTTGCCTTTATGTTATCGGCCTTCATAAAAAAGTCATCTTCAACCACAACTGTCGGTTTCTCCATTTTTATCATTGGCTTTTTAATCCAGGCAAGATGTCTAAAGTTCAAGATTTTCTTAAATGAGGCGACATCCACTCCTAAAAAGACTGGCATTAGCTGGAGTAGAAGGGCAAACTGCGGACCAGGGGATGAAAATTGTGTTATAACAATTAATGACATTTATATATGGCTGGTGGCTACATTCTTCCTCTGGTTCGTATTGGCTATATACTTCGATAATATCATCCCAAATGTATCTGGTGTGAGAAAATCAGTTTTTTACTTTCTGAAGCCAGGATACTGGACAGGGAAAAGTGGAAACAAAGTGGAAGACGATGAAGATGTCCTTGAAGAGGAGAACATTGTTAAAGAGCAAACTAAGGAAGGCACAGTTGGTCCAAACCTTGCAGGGTTATGGGTCAACTTTGCAAAGGATCAGTTATTTTGTCTACTTGGACCCAATGGAGCTGGGAAAACCACAGCAATAAATTGTTTAACCGGCATCACACCAGTGACTGGAGGAGATGCGTTGATCTATGGAAATTCTCCCCGAAGCTCTGTCGGCATGGCAAACATTCGAAAAATGATAGGAGTTTGTCCACAGTTTGATATTCTTTGGGATGCATTGTCTGGGCAAGAGCATCTTCACATATTCGCTAGTATCAAAGGCCTTCCTCCAGCATCAATAAAATTGGCTACTATGAAGTCACTGGAAGAGGTGAAACTGACTGATGCAGCCAAAATGAGAGCTGGTAGTTACAGTGGAGGAATGAAGCGTCGCTTGAGTGTTGCAATAGCCCTTATTGGTGATCTGAAGTTAGTTATCCTAGATGAACCGACAATTGGTATGGATCCAATATCTATGTTGAGACCGAAATTTTCACAAACCCAAAATAAAAAAGTGGTTCGATGCAAAAGTGAGAATCCAATAGCTTTCAAGTTGGTTAGCTTGATTATCTCCAAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

653

Amino Acids

73.1

Weight (kDa)

9.16

Isoelectric Point (pI)

34.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane_3	PF12698	224 - 345	8.1e-15	ABC-2 family transporter protein
ABC_tran	PF00005	471 - 611	5.4e-22	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0000452)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1157
Acc16I	TGCGCA	1 cut(s)	436
AccB7I	CCANNNNNTGG	1 cut(s)	1508
AccBSI	CCGCTC	1 cut(s)	291
AccI	GTMKAC	1 cut(s)	1441
AciI	CCGC	7 cut(s)	23, 90, 215, 236, 291, 572, 1131
AclWI	GGATC	7 cut(s)	200, 226, 527, 540, 1434, 1838, 1851
AcsI	RAATTY	6 cut(s)	545, 552, 596, 623, 1534, 1868
AcuI	CTGAAG	4 cut(s)	417, 545, 1301, 1826
AfaI	GTAC	2 cut(s)	191, 855
AfiI	CCNNNNNNNGG	4 cut(s)	640, 1345, 1508, 1835
AflII	CTTAAG	1 cut(s)	746
AgeI	ACCGGT	1 cut(s)	14
AjnI	CCWGG	3 cut(s)	1038, 1135, 1285
AjuI	GAANNNNNNNTTGG	4 cut(s)	1368, 1400, 1818, 1850
AleI	CACNNNNGTG	1 cut(s)	1502
Alw26I	GTCTC	1 cut(s)	1855
AlwI	GGATC	7 cut(s)	200, 226, 527, 540, 1434, 1838, 1851
AlwNI	CAGNNNCTG	2 cut(s)	217, 1508
AoxI	GGCC	6 cut(s)	156, 353, 484, 647, 969, 1660
ApeKI	GCWGC	6 cut(s)	31, 569, 689, 692, 751, 1727
ApoI	RAATTY	6 cut(s)	545, 552, 596, 623, 1534, 1868
AseI	ATTAAT	1 cut(s)	1164
AsiGI	ACCGGT	1 cut(s)	14
AspA2I	CCTAGG	1 cut(s)	305
AspLEI	GCGC	2 cut(s)	81, 437
AspS9I	GGNCC	4 cut(s)	671, 1133, 1388, 1448
AsuC2I	CCSGG	3 cut(s)	348, 362, 392
AsuHPI	GGTGA	3 cut(s)	193, 1723, 1811
AsuII	TTCGAA	1 cut(s)	1570
AvaII	GGWCC	4 cut(s)	671, 1133, 1388, 1448
AvrII	CCTAGG	1 cut(s)	305
BamHI	GGATCC	2 cut(s)	532, 1843
BanII	GRGCYC	1 cut(s)	305
BarI	GAAGNNNNNNTAC	2 cut(s)	1274, 1306
BbsI	GAAGAC	2 cut(s)	171, 1329
BbvCI	CCTCAGC	1 cut(s)	210
BbvI	GCAGC	6 cut(s)	18, 556, 679, 701, 738, 1739
BccI	CCATC	2 cut(s)	338, 766
BceAI	ACGGC	1 cut(s)	253
BciT130I	CCWGG	3 cut(s)	1040, 1137, 1287
BciVI	GTATCC	1 cut(s)	1283
BclI	TGATCA	1 cut(s)	729
BcnI	CCSGG	3 cut(s)	348, 362, 392
BcoDI	GTCTC	1 cut(s)	1855
BfaI	CTAG	3 cut(s)	306, 1650, 1820
BfmI	CTRYAG	1 cut(s)	488
BfrI	CTTAAG	1 cut(s)	746
BfuI	GTATCC	1 cut(s)	1283
BglI	GCCNNNNNGGC	1 cut(s)	335
BisI	GCNGC	7 cut(s)	32, 215, 570, 690, 693, 752, 1728
BlnI	CCTAGG	1 cut(s)	305
BlsI	GCNGC	7 cut(s)	33, 216, 571, 691, 694, 753, 1729
BmcAI	AGTACT	1 cut(s)	855
Bme1390I	CCNGG	6 cut(s)	348, 362, 392, 1040, 1137, 1287
Bme18I	GGWCC	4 cut(s)	671, 1133, 1388, 1448
BmgT120I	GGNCC	4 cut(s)	671, 1133, 1388, 1448
BmiI	GGNNCC	3 cut(s)	534, 1450, 1845
BmrFI	CCNGG	6 cut(s)	348, 362, 392, 1040, 1137, 1287
BmsI	GCATC	8 cut(s)	316, 1503, 1507, 1603, 1642, 1682, 1714, 1892
BpiI	GAAGAC	2 cut(s)	171, 1329
BpmI	CTGGAG	4 cut(s)	86, 1132, 1530, 1653
Bpu10I	CCTNAGC	1 cut(s)	210
Bpu14I	TTCGAA	1 cut(s)	1570
BpuEI	CTTGAG	1 cut(s)	1795
BpuMI	CCSGG	3 cut(s)	348, 362, 392
BsaI	GGTCTC	1 cut(s)	1855
BsaJI	CCNNGG	4 cut(s)	305, 390, 674, 1136
BsaWI	WCCGGW	2 cut(s)	14, 192
BsaXI	ACNNNNNCTCC	2 cut(s)	1072, 1102
Bsc4I	CCNNNNNNNGG	4 cut(s)	640, 1345, 1508, 1835
Bse118I	RCCGGY	2 cut(s)	14, 1490
Bse1I	ACTGG	6 cut(s)	800, 1105, 1298, 1502, 1513, 1707
Bse3DI	GCAATG	3 cut(s)	645, 663, 768
BseBI	CCWGG	3 cut(s)	1040, 1137, 1287
BseDI	CCNNGG	4 cut(s)	305, 390, 674, 1136
BseGI	GGATG	4 cut(s)	1082, 1147, 1236, 1618
BseLI	CCNNNNNNNGG	4 cut(s)	640, 1345, 1508, 1835
BseMI	GCAATG	3 cut(s)	645, 663, 768
BseMII	CTCAG	5 cut(s)	182, 188, 224, 519, 852
BseNI	ACTGG	6 cut(s)	800, 1105, 1298, 1502, 1513, 1707
BseRI	GAGGAG	5 cut(s)	56, 59, 98, 1361, 1527
BseXI	GCAGC	6 cut(s)	18, 556, 679, 701, 738, 1739
BseYI	CCCAGC	2 cut(s)	603, 1460
BshFI	GGCC	6 cut(s)	158, 355, 486, 649, 971, 1662
BshTI	ACCGGT	1 cut(s)	14
BsiSI	CCGG	6 cut(s)	15, 193, 348, 362, 392, 1491
BslI	CCNNNNNNNGG	4 cut(s)	640, 1345, 1508, 1835
BsmAI	GTCTC	1 cut(s)	1855
BsmI	GAATGC	1 cut(s)	614
BsnI	GGCC	6 cut(s)	158, 355, 486, 649, 971, 1662
Bso31I	GGTCTC	1 cut(s)	1855
Bsp119I	TTCGAA	1 cut(s)	1570
Bsp1286I	GDGCHC	1 cut(s)	305
Bsp143I	GATC	9 cut(s)	205, 231, 295, 532, 729, 1426, 1524, 1801, 1843
BspACI	CCGC	7 cut(s)	23, 90, 215, 236, 291, 572, 1131
BspANI	GGCC	6 cut(s)	158, 355, 486, 649, 971, 1662
BspCNI	CTCAG	5 cut(s)	181, 187, 223, 520, 851
BspLI	GGNNCC	3 cut(s)	534, 1450, 1845
BspMAI	CTGCAG	1 cut(s)	492
BspPI	GGATC	7 cut(s)	200, 226, 527, 540, 1434, 1838, 1851
BspT104I	TTCGAA	1 cut(s)	1570
BspTI	CTTAAG	1 cut(s)	746
BspTNI	GGTCTC	1 cut(s)	1855
BsrBI	CCGCTC	1 cut(s)	291
BsrDI	GCAATG	3 cut(s)	645, 663, 768
BsrFI	RCCGGY	2 cut(s)	14, 1490
BsrI	ACTGG	6 cut(s)	800, 1105, 1298, 1502, 1513, 1707
BssAI	RCCGGY	2 cut(s)	14, 1490
BssECI	CCNNGG	4 cut(s)	305, 390, 674, 1136
BssMI	GATC	9 cut(s)	205, 231, 295, 532, 729, 1426, 1524, 1801, 1843
BssT1I	CCWWGG	2 cut(s)	305, 674
Bst2UI	CCWGG	3 cut(s)	1040, 1137, 1287
Bst4CI	ACNGT	6 cut(s)	472, 853, 1003, 1384, 1596, 1754
Bst6I	CTCTTC	2 cut(s)	1338, 1701
BstAFI	CTTAAG	1 cut(s)	746
BstAPI	GCANNNNNTGC	1 cut(s)	635
BstBI	TTCGAA	1 cut(s)	1570
BstC8I	GCNNGC	2 cut(s)	488, 810
BstDEI	CTNAG	6 cut(s)	168, 174, 210, 528, 838, 1371
BstENI	CCTNNNNNAGG	1 cut(s)	1343
BstF5I	GGATG	4 cut(s)	1082, 1147, 1236, 1618
BstHHI	GCGC	2 cut(s)	81, 437
BstKTI	GATC	9 cut(s)	208, 234, 298, 535, 732, 1429, 1527, 1804, 1846
BstMAI	GTCTC	1 cut(s)	1855
BstMBI	GATC	9 cut(s)	205, 231, 295, 532, 729, 1426, 1524, 1801, 1843
BstMWI	GCNNNNNNNGC	6 cut(s)	31, 164, 223, 335, 635, 1554
BstNI	CCWGG	3 cut(s)	1040, 1137, 1287
BstSCI	CCNGG	6 cut(s)	346, 360, 390, 1038, 1135, 1285
BstSFI	CTRYAG	1 cut(s)	488
BstV1I	GCAGC	6 cut(s)	18, 556, 679, 701, 738, 1739
BstV2I	GAAGAC	2 cut(s)	171, 1329
BstX2I	RGATCY	2 cut(s)	532, 1843
BstXI	CCANNNNNNTGG	1 cut(s)	1293
BstYI	RGATCY	2 cut(s)	532, 1843
BsuI	GTATCC	1 cut(s)	1283
BsuRI	GGCC	6 cut(s)	158, 355, 486, 649, 971, 1662
BtsCI	GGATG	4 cut(s)	1082, 1147, 1236, 1618
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	6 cut(s)	8, 183, 468, 1509, 1700, 1759
Cac8I	GCNNGC	2 cut(s)	488, 810
CaiI	CAGNNNCTG	2 cut(s)	217, 1508
CfoI	GCGC	2 cut(s)	81, 437
Cfr10I	RCCGGY	2 cut(s)	14, 1490
Cfr13I	GGNCC	4 cut(s)	671, 1133, 1388, 1448
CseI	GACGC	3 cut(s)	173, 187, 1757
Csp6I	GTAC	2 cut(s)	190, 854
CspAI	ACCGGT	1 cut(s)	14
CviAII	CATG	7 cut(s)	75, 334, 697, 804, 813, 1558, 1959
CviQI	GTAC	2 cut(s)	190, 854
DdeI	CTNAG	6 cut(s)	168, 174, 210, 528, 838, 1371
DpnI	GATC	9 cut(s)	207, 233, 297, 534, 731, 1428, 1526, 1803, 1845
DpnII	GATC	9 cut(s)	205, 231, 295, 532, 729, 1426, 1524, 1801, 1843
Eam1104I	CTCTTC	2 cut(s)	1338, 1701
EarI	CTCTTC	2 cut(s)	1338, 1701
Eco130I	CCWWGG	2 cut(s)	305, 674
Eco147I	AGGCCT	3 cut(s)	158, 649, 1662
Eco24I	GRGCYC	1 cut(s)	305
Eco31I	GGTCTC	1 cut(s)	1855
Eco47I	GGWCC	4 cut(s)	671, 1133, 1388, 1448
Eco57I	CTGAAG	4 cut(s)	417, 545, 1301, 1826
EcoNI	CCTNNNNNAGG	1 cut(s)	1343
EcoRII	CCWGG	3 cut(s)	1038, 1135, 1285
EcoT14I	CCWWGG	2 cut(s)	305, 674
EcoT22I	ATGCAT	1 cut(s)	1618
EcoT38I	GRGCYC	1 cut(s)	305
ErhI	CCWWGG	2 cut(s)	305, 674
FaeI	CATG	7 cut(s)	78, 337, 700, 807, 816, 1561, 1962
FalI	AAGNNNNNCTT	8 cut(s)	1052, 1084, 1323, 1355, 1620, 1652, 1757, 1789
FatI	CATG	7 cut(s)	74, 333, 696, 803, 812, 1557, 1958
FauI	CCCGC	1 cut(s)	243
FbaI	TGATCA	1 cut(s)	729
FblI	GTMKAC	1 cut(s)	1441
Fnu4HI	GCNGC	7 cut(s)	32, 215, 570, 690, 693, 752, 1728
FokI	GGATG	4 cut(s)	1069, 1154, 1223, 1625
FriOI	GRGCYC	1 cut(s)	305
Fsp4HI	GCNGC	7 cut(s)	32, 215, 570, 690, 693, 752, 1728
FspBI	CTAG	3 cut(s)	306, 1650, 1820
FspI	TGCGCA	1 cut(s)	436
GlaI	GCGC	2 cut(s)	80, 436
GluI	GCNGC	7 cut(s)	32, 215, 570, 690, 693, 752, 1728
GsaI	CCCAGC	2 cut(s)	607, 1464
GsuI	CTGGAG	4 cut(s)	86, 1132, 1530, 1653
HaeIII	GGCC	6 cut(s)	158, 355, 486, 649, 971, 1662
HapII	CCGG	6 cut(s)	15, 193, 348, 362, 392, 1491
HgaI	GACGC	3 cut(s)	173, 187, 1757
HhaI	GCGC	2 cut(s)	81, 437
Hin1II	CATG	7 cut(s)	78, 337, 700, 807, 816, 1561, 1962
Hin6I	GCGC	2 cut(s)	79, 435
HinP1I	GCGC	2 cut(s)	79, 435
HincII	GTYRAC	1 cut(s)	1414
HindII	GTYRAC	1 cut(s)	1414
HinfI	GANTC	5 cut(s)	172, 310, 421, 590, 1915
HpaII	CCGG	6 cut(s)	15, 193, 348, 362, 392, 1491
HphI	GGTGA	3 cut(s)	193, 1723, 1811
Hpy166II	GTNNAC	3 cut(s)	1414, 1442, 1592
Hpy188I	TCNGA	7 cut(s)	171, 231, 300, 315, 564, 1281, 1806
Hpy188III	TCNNGA	2 cut(s)	151, 1060
Hpy8I	GTNNAC	3 cut(s)	1414, 1442, 1592
Hpy99I	CGWCG	2 cut(s)	167, 1773
HpyAV	CCTTC	7 cut(s)	148, 345, 660, 982, 1113, 1370, 1673
HpyCH4III	ACNGT	6 cut(s)	472, 853, 1003, 1384, 1596, 1754
HpyF10VI	GCNNNNNNNGC	6 cut(s)	31, 164, 223, 335, 635, 1554
HpyF3I	CTNAG	6 cut(s)	168, 174, 210, 528, 838, 1371
Hsp92II	CATG	7 cut(s)	78, 337, 700, 807, 816, 1561, 1962
HspAI	GCGC	2 cut(s)	79, 435
Ksp22I	TGATCA	1 cut(s)	729
Kzo9I	GATC	9 cut(s)	205, 231, 295, 532, 729, 1426, 1524, 1801, 1843
LmnI	GCTCC	7 cut(s)	111, 195, 288, 315, 440, 574, 1457
Lsp1109I	GCAGC	6 cut(s)	18, 556, 679, 701, 738, 1739
LweI	GCATC	8 cut(s)	316, 1503, 1507, 1603, 1642, 1682, 1714, 1892
MaeI	CTAG	3 cut(s)	306, 1650, 1820
MaeIII	GTNAC	4 cut(s)	199, 1504, 1698, 1748
MalI	GATC	9 cut(s)	207, 233, 297, 534, 731, 1428, 1526, 1803, 1845
MbiI	CCGCTC	1 cut(s)	291
MboI	GATC	9 cut(s)	205, 231, 295, 532, 729, 1426, 1524, 1801, 1843
MfeI	CAATTG	1 cut(s)	1833
MflI	RGATCY	2 cut(s)	532, 1843
MhlI	GDGCHC	1 cut(s)	305
MlyI	GAGTC	1 cut(s)	166
MmeI	TCCRAC	1 cut(s)	958
Mph1103I	ATGCAT	1 cut(s)	1618
MseI	TTAA	9 cut(s)	375, 747, 879, 890, 1034, 1070, 1164, 1359, 1487
MslI	CAYNNNNRTG	1 cut(s)	1502
MspA1I	CMGCKG	2 cut(s)	217, 692
MspCI	CTTAAG	1 cut(s)	746
MspI	CCGG	6 cut(s)	15, 193, 348, 362, 392, 1491
MspR9I	CCNGG	6 cut(s)	348, 362, 392, 1040, 1137, 1287
MunI	CAATTG	1 cut(s)	1833
Mva1269I	GAATGC	1 cut(s)	614
MvaI	CCWGG	3 cut(s)	1040, 1137, 1287
MwoI	GCNNNNNNNGC	6 cut(s)	31, 164, 223, 335, 635, 1554
NciI	CCSGG	3 cut(s)	348, 362, 392
NdeII	GATC	9 cut(s)	205, 231, 295, 532, 729, 1426, 1524, 1801, 1843
NlaIII	CATG	7 cut(s)	78, 337, 700, 807, 816, 1561, 1962
NlaIV	GGNNCC	3 cut(s)	534, 1450, 1845
NmuCI	GTSAC	3 cut(s)	199, 1504, 1698
NsbI	TGCGCA	1 cut(s)	436
NsiI	ATGCAT	1 cut(s)	1618
NspV	TTCGAA	1 cut(s)	1570
OliI	CACNNNNGTG	1 cut(s)	1502
PceI	AGGCCT	3 cut(s)	158, 649, 1662
PctI	GAATGC	1 cut(s)	614
PfeI	GAWTC	4 cut(s)	310, 421, 590, 1915
PflFI	GACNNNGTC	1 cut(s)	175
PflMI	CCANNNNNTGG	1 cut(s)	1508
PfoI	TCCNGGA	1 cut(s)	346
PinAI	ACCGGT	1 cut(s)	14
PkrI	GCNGC	7 cut(s)	33, 216, 571, 691, 694, 753, 1729
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
PshBI	ATTAAT	1 cut(s)	1164
PsiI	TTATAA	1 cut(s)	1157
Psp6I	CCWGG	3 cut(s)	1038, 1135, 1285
PspFI	CCCAGC	2 cut(s)	603, 1460
PspGI	CCWGG	3 cut(s)	1038, 1135, 1285
PspN4I	GGNNCC	3 cut(s)	534, 1450, 1845
PspPI	GGNCC	4 cut(s)	671, 1133, 1388, 1448
PstI	CTGCAG	1 cut(s)	492
PstNI	CAGNNNCTG	2 cut(s)	217, 1508
PsuI	RGATCY	2 cut(s)	532, 1843
PsyI	GACNNNGTC	1 cut(s)	175
PvuII	CAGCTG	1 cut(s)	692
RsaI	GTAC	2 cut(s)	191, 855
RsaNI	GTAC	2 cut(s)	190, 854
RseI	CAYNNNNRTG	1 cut(s)	1502
SaqAI	TTAA	9 cut(s)	375, 747, 879, 890, 1034, 1070, 1164, 1359, 1487
SatI	GCNGC	7 cut(s)	32, 215, 570, 690, 693, 752, 1728
Sau3AI	GATC	9 cut(s)	205, 231, 295, 532, 729, 1426, 1524, 1801, 1843
Sau96I	GGNCC	4 cut(s)	671, 1133, 1388, 1448
ScaI	AGTACT	1 cut(s)	855
SchI	GAGTC	1 cut(s)	166
ScrFI	CCNGG	6 cut(s)	348, 362, 392, 1040, 1137, 1287
SduI	GDGCHC	1 cut(s)	305
SfaNI	GCATC	8 cut(s)	316, 1503, 1507, 1603, 1642, 1682, 1714, 1892
SfcI	CTRYAG	1 cut(s)	488
SfuI	TTCGAA	1 cut(s)	1570
SinI	GGWCC	4 cut(s)	671, 1133, 1388, 1448
SmiMI	CAYNNNNRTG	1 cut(s)	1502
SmlI	CTYRAG	2 cut(s)	746, 1774
SmoI	CTYRAG	2 cut(s)	746, 1774
SseBI	AGGCCT	3 cut(s)	158, 649, 1662
SsiI	CCGC	7 cut(s)	23, 90, 215, 236, 291, 572, 1131
SspMI	CTAG	3 cut(s)	306, 1650, 1820
StuI	AGGCCT	3 cut(s)	158, 649, 1662
StyD4I	CCNGG	6 cut(s)	346, 360, 390, 1038, 1135, 1285
StyI	CCWWGG	2 cut(s)	305, 674
TaaI	ACNGT	6 cut(s)	472, 853, 1003, 1384, 1596, 1754
TaqI	TCGA	4 cut(s)	324, 1227, 1570, 1900
TaqII	GACCGA	1 cut(s)	1879
TatI	WGTACW	1 cut(s)	853
TauI	GCSGC	1 cut(s)	217
TfiI	GAWTC	4 cut(s)	310, 421, 590, 1915
Tru1I	TTAA	9 cut(s)	375, 747, 879, 890, 1034, 1070, 1164, 1359, 1487
Tru9I	TTAA	9 cut(s)	375, 747, 879, 890, 1034, 1070, 1164, 1359, 1487
TscAI	CASTG	6 cut(s)	15, 190, 475, 1509, 1707, 1759
TseFI	GTSAC	3 cut(s)	199, 1504, 1698
TseI	GCWGC	6 cut(s)	31, 569, 689, 692, 751, 1727
Tsp45I	GTSAC	3 cut(s)	199, 1504, 1698
TspDTI	ATGAA	8 cut(s)	115, 420, 964, 1158, 1344, 1709, 1778, 1839
TspRI	CASTG	6 cut(s)	15, 190, 475, 1509, 1707, 1759
Tth111I	GACNNNGTC	1 cut(s)	175
Van91I	CCANNNNNTGG	1 cut(s)	1508
Vha464I	CTTAAG	1 cut(s)	746
VpaK11BI	GGWCC	4 cut(s)	671, 1133, 1388, 1448
VspI	ATTAAT	1 cut(s)	1164
XagI	CCTNNNNNAGG	1 cut(s)	1343
XapI	RAATTY	6 cut(s)	545, 552, 596, 623, 1534, 1868
XmaJI	CCTAGG	1 cut(s)	305
XmiI	GTMKAC	1 cut(s)	1441
XspI	CTAG	3 cut(s)	306, 1650, 1820
ZrmI	AGTACT	1 cut(s)	855
Zsp2I	ATGCAT	1 cut(s)	1618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.