Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000452

Physical Location & Seq

Genomic Coordinates Forward (+)

19945024 .. 19948794

Gene Structure 3771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0218600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCTCCGTTGAAACTCATCGCCGCCCTCCTTGTCTCCTTCTGCGTTCTTCTACCTCTCACTCATGCCGTCAGCAAGGACGTTAGCTACTGCGATAAGAATGCTGACTATGCTGTCAAGGTTACGGGACTCGACATAAACCCTTACCCTATCGCCAGAGGCAAGCCGGCCAGCTTCAACATTGCTGCAACTACAGGTGAATCAATCACCGGAGGGAAATTGGTGATTGATGTTTCCTACTTTGGGTGGCACATCCACAGTGAGAATCATGACCTTTGCTCGGAAACATCTTGCCCTGTTTCTATTGGTGATTTCGTGGTCGCCCACTCACAAGAATTACCTGGATATACTCCACCGGGTTCGTACTCTCTTAAGATGAAGATGTATGATGGAAACAAGCAAGAGCTGACATGCATTGCCTTCGATTTTGACATTGGGTTTGTAGCTCCTGTGGCCGATAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009642 GO:0009644 GO:0009892 GO:0010099 GO:0010605 GO:0016604 GO:0016607 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051438 GO:0051444 GO:0055121 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0080022 GO:0080090 GO:0099402 GO:1903320 GO:1903321 GO:1904666 GO:1904667 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hep_59

Protein Analysis

154

Amino Acids

16.53

Weight (kDa)

5.15

Isoelectric Point (pI)

44.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1_DerP2_DerF2	PF02221	27 - 145	3.6e-26	ML domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000452)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	113
AciI	CCGC	1 cut(s)	24
AcoI	YGGCCR	2 cut(s)	168, 453
AfaI	GTAC	1 cut(s)	365
AfiI	CCNNNNNNNGG	2 cut(s)	243, 280
AflII	CTTAAG	1 cut(s)	371
AgsI	TTSAA	2 cut(s)	13, 178
AjnI	CCWGG	1 cut(s)	340
AluBI	AGCT	4 cut(s)	87, 174, 406, 446
AluI	AGCT	4 cut(s)	87, 174, 406, 446
Alw26I	GTCTC	1 cut(s)	40
AoxI	GGCC	2 cut(s)	168, 453
ApeKI	GCWGC	1 cut(s)	185
ArsI	GACNNNNNNTTYG	2 cut(s)	422, 454
AsuC2I	CCSGG	1 cut(s)	357
AsuHPI	GGTGA	4 cut(s)	199, 209, 235, 320
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	1 cut(s)	383
BceAI	ACGGC	1 cut(s)	53
BcgI	CGANNNNNNTGC	4 cut(s)	83, 117, 403, 437
BciT130I	CCWGG	1 cut(s)	342
BcnI	CCSGG	1 cut(s)	357
BcoDI	GTCTC	1 cut(s)	40
BfmI	CTRYAG	1 cut(s)	192
BfrI	CTTAAG	1 cut(s)	371
BisI	GCNGC	2 cut(s)	24, 186
BlsI	GCNGC	2 cut(s)	25, 187
Bme1390I	CCNGG	2 cut(s)	342, 357
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	342, 357
BpuMI	CCSGG	1 cut(s)	357
BsaWI	WCCGGW	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	2 cut(s)	243, 280
Bse118I	RCCGGY	1 cut(s)	166
Bse3DI	GCAATG	2 cut(s)	180, 414
BseBI	CCWGG	1 cut(s)	342
BseGI	GGATG	1 cut(s)	252
BseLI	CCNNNNNNNGG	2 cut(s)	243, 280
BseMI	GCAATG	2 cut(s)	180, 414
BseXI	GCAGC	1 cut(s)	172
BshFI	GGCC	2 cut(s)	170, 455
BsiSI	CCGG	3 cut(s)	167, 210, 356
BslFI	GGGAC	1 cut(s)	141
BslI	CCNNNNNNNGG	2 cut(s)	243, 280
BsmAI	GTCTC	1 cut(s)	40
BsmFI	GGGAC	1 cut(s)	141
BsmI	GAATGC	1 cut(s)	106
BsnI	GGCC	2 cut(s)	170, 455
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	2 cut(s)	170, 455
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	6
BspTI	CTTAAG	1 cut(s)	371
BsrDI	GCAATG	2 cut(s)	180, 414
BsrFI	RCCGGY	1 cut(s)	166
BssAI	RCCGGY	1 cut(s)	166
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	1 cut(s)	260
BstAFI	CTTAAG	1 cut(s)	371
BstC8I	GCNNGC	3 cut(s)	164, 168, 172
BstF5I	GGATG	1 cut(s)	252
BstMAI	GTCTC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 452
BstNI	CCWGG	1 cut(s)	342
BstNSI	RCATGY	1 cut(s)	414
BstSCI	CCNGG	2 cut(s)	340, 355
BstSFI	CTRYAG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	172
BsuRI	GGCC	2 cut(s)	170, 455
BtgZI	GCGATG	1 cut(s)	4
BtsCI	GGATG	1 cut(s)	252
BtsIMutI	CAGTG	1 cut(s)	265
Cac8I	GCNNGC	3 cut(s)	164, 168, 172
CciI	TCATGA	1 cut(s)	268
Cfr10I	RCCGGY	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	364
CviAII	CATG	3 cut(s)	65, 269, 411
CviJI	RGCY	8 cut(s)	5, 87, 166, 170, 174, 406, 446, 455
CviKI_1	RGCY	8 cut(s)	5, 87, 166, 170, 174, 406, 446, 455
CviQI	GTAC	1 cut(s)	364
DrdI	GACNNNNNNGTC	1 cut(s)	113
DseDI	GACNNNNNNGTC	1 cut(s)	113
EaeI	YGGCCR	2 cut(s)	168, 453
EcoRII	CCWGG	1 cut(s)	340
EcoT22I	ATGCAT	1 cut(s)	416
FaeI	CATG	3 cut(s)	68, 272, 414
FaiI	YATR	7 cut(s)	66, 111, 137, 270, 348, 387, 412
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	3 cut(s)	64, 268, 410
Fnu4HI	GCNGC	2 cut(s)	24, 186
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	2 cut(s)	24, 186
GluI	GCNGC	2 cut(s)	24, 186
HaeIII	GGCC	2 cut(s)	170, 455
HapII	CCGG	3 cut(s)	167, 210, 356
Hin1II	CATG	3 cut(s)	68, 272, 414
HinfI	GANTC	3 cut(s)	129, 200, 265
HpaII	CCGG	3 cut(s)	167, 210, 356
HphI	GGTGA	4 cut(s)	199, 209, 235, 320
Hpy188I	TCNGA	1 cut(s)	283
Hpy188III	TCNNGA	1 cut(s)	269
HpyAV	CCTTC	2 cut(s)	49, 430
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	2 cut(s)	188, 414
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 452
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	3 cut(s)	68, 272, 414
KroI	GCCGGC	1 cut(s)	166
KroNI	GCCGGC	1 cut(s)	168
LmnI	GCTCC	2 cut(s)	10, 451
LpnPI	CCDG	9 cut(s)	169, 180, 180, 184, 223, 309, 327, 354, 369
Lsp1109I	GCAGC	1 cut(s)	172
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	121
MboII	GAAGA	2 cut(s)	41, 391
MluCI	AATT	2 cut(s)	218, 335
MlyI	GAGTC	1 cut(s)	123
MnlI	CCTC	4 cut(s)	38, 66, 152, 206
Mph1103I	ATGCAT	1 cut(s)	416
MroNI	GCCGGC	1 cut(s)	166
MseI	TTAA	2 cut(s)	372, 463
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	3 cut(s)	167, 210, 356
MspR9I	CCNGG	2 cut(s)	342, 357
Mva1269I	GAATGC	1 cut(s)	106
MvaI	CCWGG	1 cut(s)	342
MwoI	GCNNNNNNNGC	2 cut(s)	110, 452
NaeI	GCCGGC	1 cut(s)	168
NciI	CCSGG	1 cut(s)	357
NgoMIV	GCCGGC	1 cut(s)	166
NlaIII	CATG	3 cut(s)	68, 272, 414
NlaIV	GGNNCC	1 cut(s)	6
NsiI	ATGCAT	1 cut(s)	416
NspI	RCATGY	1 cut(s)	414
PagI	TCATGA	1 cut(s)	268
PctI	GAATGC	1 cut(s)	106
PdiI	GCCGGC	1 cut(s)	168
PfeI	GAWTC	2 cut(s)	200, 265
PkrI	GCNGC	2 cut(s)	25, 187
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
Psp6I	CCWGG	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	1 cut(s)	6
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
SaqAI	TTAA	2 cut(s)	372, 463
SatI	GCNGC	2 cut(s)	24, 186
SchI	GAGTC	1 cut(s)	123
ScrFI	CCNGG	2 cut(s)	342, 357
SfcI	CTRYAG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	2 cut(s)	218, 335
SsiI	CCGC	1 cut(s)	24
StyD4I	CCNGG	2 cut(s)	340, 355
TaaI	ACNGT	1 cut(s)	260
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	2 cut(s)	132, 423
TasI	AATT	2 cut(s)	218, 335
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	2 cut(s)	200, 265
Tru1I	TTAA	2 cut(s)	372, 463
Tru9I	TTAA	2 cut(s)	372, 463
TscAI	CASTG	1 cut(s)	265
TseI	GCWGC	1 cut(s)	185
TspDTI	ATGAA	1 cut(s)	392
TspRI	CASTG	1 cut(s)	265
Vha464I	CTTAAG	1 cut(s)	371
XceI	RCATGY	1 cut(s)	414
Zsp2I	ATGCAT	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.