Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000452

Physical Location & Seq

Genomic Coordinates Reverse (-)

612078 .. 614407

Gene Structure 2330 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0004100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1548 bp

ATGGATCCTAACCCGTCCAACTTCCCCATCCTCTCCTACGTCATGGACCGCCTTTCCACCGTAGGATCCAAGTCCGCCGTCGACGACATCTCCGACCTTGAGTCCATTCAAATCGACGATGGCCAGCCCCAGTTGATCAAACCCCACCAACCATCCTCAGGCCTCCTCCACCAGATGCCCCACCTCTCCGACCCCAAAGTCTTCGCCGCCATGACCCGCGCCGTCTCCGACGTCGCCCAGACCCGCTCCGTCCTCAACGCCCTCGGCGACCGTCCCGACCACGAGGCCGTCGACGCCGCCAAGGCCAAGCTCGCCCACATCGAGTCCACTCTCTCCAAGAAGCTCGAGGACCTCGTCCTCTCCCCCCGCCCCTCCGACGTCGACCGCTTCCAGTGGCGGGCCCACCTCGCCGAGCGCGAGCAGCAGTGCCGCGACGCCGCCGAGAAAGACAAGCGCGACTGCAAGGCCATTCTCCAGCTCGAGGAGCTCCACGCCTCCTACGAGAAGCTTCTCAAGGACGCCGAGGACAGGCTCACCAAGATTTATCGCTCCGCCGAGGACGGAGTCGTCGAGGAGCCGCCGCCGGTCACCGACCAAGTCCATGAGGAGGTCGTCGGCATTCTGCAGCAGGCTTCCGGCACTGCGCTCGACCGGATCAACCTCTCCGGCCGCCGCCTCCGGTGCTTGCCGGAGGCATTTGGCAGGATCACCGGATTGCTACACCTTGATCTTTCCAACAATGAGCTCCAGCTTATTCCTGATACAATATCTGGATTGGAGAAGCTACAAGAGCTTAACTTGTCTTCCAATCTGTTGGAGTCACTGCCTGACACCATTGGCCTGCTGCAAAATTTGAAGGTTCTGAATGTCTCCGGCAACAAGCTGGCTGCTCTTCCTGACTCTATCTGTCATTGCAGGTCATTGGTGGAGTTGGATGTGAGTTTCAACAACCTCACATACTTGCCAACCAACATTGGTTATGAGTTGGTCAATCTTCAGAAGCTTTCCATGCAATTAAACAAAATCCGTTCCCTTCCCACCTCTGTTTGTGAGCTGAGGTCTCTGCGCTCCTTGGATGCTCACTTCAATGAGCTTCGGGGCCTTCCACTGGCTTTTGGCCGATTGGCCAATCTCCAAAGTCTGAACCTTGCCAGCAACTTTACTGACCTTACTGAGCTGCCAGATACTTTTGGTGATCTAACCAACCTCAAGGAACTTGATCTCAGCAACAATCAGATTCATGCTCTGCCAGATACATTTGGCCGCCTTGACAATTTGACCAAACTTAACTTGGACGGAAACCCTCTTGTGCTTCCACCCCCTGACATAGTTCAACAAGGTGTTGACGCTGTCAAGCTCTTTATGGCCAAGAGGTGGTTGGAGATACTGGTGGAAGAAGAAAGGAAGAGCATGCTTCAAGTACAAGAAGAAGCAGAAACTGGATGGTTGACACGCAGCACTTCCTGGTTGACACGCAGCCTTTCAGGTGTTTCTGGATATCTGTCTCCAAGATCTCCAAGAGACCCGATTCTTGATCAGCAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

515

Amino Acids

57.31

Weight (kDa)

5.06

Isoelectric Point (pI)

46.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	218 - 272	2.9e-09	Leucine rich repeat
LRR_8	PF13855	261 - 318	1.9e-09	Leucine rich repeat
LRR_14	PF23598	265 - 325	1e-06	Leucine-rich repeat region
LRR_8	PF13855	306 - 365	2.1e-07	Leucine rich repeat
LRR_14	PF23598	317 - 384	3.7e-07	Leucine-rich repeat region
LRR_8	PF13855	377 - 436	2.1e-11	Leucine rich repeat
LRR_14	PF23598	388 - 434	4.6e-06	Leucine-rich repeat region
LRR_4	PF12799	401 - 436	4.1e-07	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0000452)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	197, 566
AatII	GACGTC	2 cut(s)	234, 381
Acc36I	ACCTGC	1 cut(s)	906
AccB7I	CCANNNNNTGG	1 cut(s)	1374
AccBSI	CCGCTC	1 cut(s)	246
AccI	GTMKAC	3 cut(s)	81, 291, 381
AccII	CGCG	4 cut(s)	219, 417, 432, 456
AclWI	GGATC	5 cut(s)	12, 60, 73, 662, 713
AcoI	YGGCCR	6 cut(s)	121, 667, 1117, 1125, 1261, 1365
AcsI	RAATTY	1 cut(s)	850
AcuI	CTGAAG	1 cut(s)	980
AcyI	GRCGYC	5 cut(s)	231, 294, 378, 435, 519
AfaI	GTAC	1 cut(s)	1422
AfiI	CCNNNNNNNGG	7 cut(s)	158, 397, 481, 528, 607, 1108, 1374
AgsI	TTSAA	6 cut(s)	110, 856, 946, 1087, 1334, 1418
AhdI	GACNNNNNGTC	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	1463
Alw21I	GWGCWC	2 cut(s)	489, 747
Alw26I	GTCTC	5 cut(s)	229, 874, 1065, 1509, 1515
AlwI	GGATC	5 cut(s)	12, 60, 73, 662, 713
AlwNI	CAGNNNCTG	1 cut(s)	1439
Ama87I	CYCGRG	2 cut(s)	344, 479
ApaI	GGGCCC	1 cut(s)	403
ApeKI	GCWGC	8 cut(s)	421, 625, 844, 887, 1177, 1455, 1476, 1540
ApoI	RAATTY	1 cut(s)	850
AspLEI	GCGC	5 cut(s)	221, 417, 456, 646, 1068
AspS9I	GGNCC	5 cut(s)	46, 349, 399, 400, 1099
AsuHPI	GGTGA	4 cut(s)	526, 580, 700, 1205
AvaI	CYCGRG	2 cut(s)	344, 479
AvaII	GGWCC	2 cut(s)	46, 349
AxyI	CCTNAGG	1 cut(s)	157
BaeGI	GKGCMC	1 cut(s)	403
BalI	TGGCCA	3 cut(s)	123, 1127, 1367
BamHI	GGATCC	2 cut(s)	4, 65
BanII	GRGCYC	3 cut(s)	403, 489, 747
BauI	CACGAG	1 cut(s)	281
BbsI	GAAGAC	2 cut(s)	193, 795
Bbv12I	GWGCWC	2 cut(s)	489, 747
BbvCI	CCTCAGC	1 cut(s)	1055
BbvI	GCAGC	7 cut(s)	433, 637, 831, 874, 1164, 1467, 1488
BccI	CCATC	4 cut(s)	35, 113, 160, 1437
BceAI	ACGGC	3 cut(s)	62, 206, 272
BcgI	CGANNNNNNTGC	2 cut(s)	628, 662
BciT130I	CCWGG	1 cut(s)	1465
BclI	TGATCA	2 cut(s)	135, 1534
BcoDI	GTCTC	5 cut(s)	229, 874, 1065, 1509, 1515
BfmI	CTRYAG	1 cut(s)	623
BfuAI	ACCTGC	1 cut(s)	906
BglI	GCCNNNNNGGC	1 cut(s)	302
BglII	AGATCT	1 cut(s)	1511
Bme1390I	CCNGG	1 cut(s)	1465
Bme18I	GGWCC	2 cut(s)	46, 349
BmeRI	GACNNNNNGTC	1 cut(s)	100
BmeT110I	CYCGRG	2 cut(s)	344, 479
BmgT120I	GGNCC	5 cut(s)	46, 349, 399, 400, 1099
BmiI	GGNNCC	5 cut(s)	6, 67, 401, 576, 1100
BmrFI	CCNGG	1 cut(s)	1465
BmrI	ACTGGG	1 cut(s)	124
BmsI	GCATC	2 cut(s)	165, 1066
BmuI	ACTGGG	1 cut(s)	124
BpiI	GAAGAC	2 cut(s)	193, 795
BpmI	CTGGAG	2 cut(s)	458, 731
Bpu10I	CCTNAGC	1 cut(s)	1055
BpuEI	CTTGAG	3 cut(s)	119, 497, 1193
BsaHI	GRCGYC	5 cut(s)	231, 294, 378, 435, 519
BsaI	GGTCTC	2 cut(s)	1065, 1515
BsaJI	CCNNGG	5 cut(s)	262, 300, 522, 555, 1071
BsaWI	WCCGGW	3 cut(s)	651, 678, 710
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	7 cut(s)	158, 397, 481, 528, 607, 1108, 1374
Bse118I	RCCGGY	1 cut(s)	583
Bse1I	ACTGG	5 cut(s)	130, 391, 1113, 1392, 1444
Bse21I	CCTNAGG	1 cut(s)	157
Bse3DI	GCAATG	1 cut(s)	910
BseBI	CCWGG	1 cut(s)	1465
BseDI	CCNNGG	5 cut(s)	262, 300, 522, 555, 1071
BseGI	GGATG	5 cut(s)	27, 152, 940, 1081, 1448
BseLI	CCNNNNNNNGG	7 cut(s)	158, 397, 481, 528, 607, 1108, 1374
BseMI	GCAATG	1 cut(s)	910
BseMII	CTCAG	4 cut(s)	171, 1046, 1164, 1237
BseNI	ACTGG	5 cut(s)	130, 391, 1113, 1392, 1444
BseRI	GAGGAG	4 cut(s)	155, 497, 587, 620
BseSI	GKGCMC	1 cut(s)	403
BseX3I	CGGCCG	1 cut(s)	667
BseXI	GCAGC	7 cut(s)	433, 637, 831, 874, 1164, 1467, 1488
Bsh1236I	CGCG	4 cut(s)	219, 417, 432, 456
Bsh1285I	CGRYCG	4 cut(s)	271, 385, 652, 670
BsiEI	CGRYCG	4 cut(s)	271, 385, 652, 670
BsiHKAI	GWGCWC	2 cut(s)	489, 747
BsiHKCI	CYCGRG	2 cut(s)	344, 479
BsiSI	CCGG	8 cut(s)	584, 636, 652, 666, 679, 689, 711, 873
BslFI	GGGAC	1 cut(s)	258
BslI	CCNNNNNNNGG	7 cut(s)	158, 397, 481, 528, 607, 1108, 1374
BsmAI	GTCTC	5 cut(s)	229, 874, 1065, 1509, 1515
BsmBI	CGTCTC	1 cut(s)	229
BsmFI	GGGAC	1 cut(s)	258
BsmI	GAATGC	1 cut(s)	618
Bso31I	GGTCTC	2 cut(s)	1065, 1515
BsoBI	CYCGRG	2 cut(s)	344, 479
Bsp120I	GGGCCC	1 cut(s)	399
Bsp1286I	GDGCHC	3 cut(s)	403, 489, 747
BspCNI	CTCAG	4 cut(s)	170, 1047, 1165, 1236
BspFNI	CGCG	4 cut(s)	219, 417, 432, 456
BspLI	GGNNCC	5 cut(s)	6, 67, 401, 576, 1100
BspMAI	CTGCAG	1 cut(s)	627
BspMI	ACCTGC	1 cut(s)	906
BspPI	GGATC	5 cut(s)	12, 60, 73, 662, 713
BspQI	GCTCTTC	2 cut(s)	897, 1400
BspTNI	GGTCTC	2 cut(s)	1065, 1515
BsrBI	CCGCTC	1 cut(s)	246
BsrDI	GCAATG	1 cut(s)	910
BsrFI	RCCGGY	1 cut(s)	583
BsrI	ACTGG	5 cut(s)	130, 391, 1113, 1392, 1444
BssAI	RCCGGY	1 cut(s)	583
BssECI	CCNNGG	5 cut(s)	262, 300, 522, 555, 1071
BssNI	GRCGYC	5 cut(s)	231, 294, 378, 435, 519
BssSI	CACGAG	1 cut(s)	281
BssT1I	CCWWGG	2 cut(s)	300, 1071
Bst2BI	CACGAG	1 cut(s)	281
Bst2UI	CCWGG	1 cut(s)	1465
Bst4CI	ACNGT	2 cut(s)	61, 272
Bst6I	CTCTTC	2 cut(s)	897, 1400
BstACI	GRCGYC	5 cut(s)	231, 294, 378, 435, 519
BstDEI	CTNAG	4 cut(s)	157, 1055, 1173, 1223
BstEII	GGTNACC	1 cut(s)	586
BstF5I	GGATG	5 cut(s)	27, 152, 940, 1081, 1448
BstFNI	CGCG	4 cut(s)	219, 417, 432, 456
BstHHI	GCGC	5 cut(s)	221, 417, 456, 646, 1068
BstMAI	GTCTC	5 cut(s)	229, 874, 1065, 1509, 1515
BstMCI	CGRYCG	4 cut(s)	271, 385, 652, 670
BstMWI	GCNNNNNNNGC	9 cut(s)	293, 302, 311, 407, 421, 484, 681, 790, 1009
BstNI	CCWGG	1 cut(s)	1465
BstNSI	RCATGY	1 cut(s)	1414
BstPI	GGTNACC	1 cut(s)	586
BstSCI	CCNGG	1 cut(s)	1463
BstSFI	CTRYAG	1 cut(s)	623
BstSLI	GKGCMC	1 cut(s)	403
BstUI	CGCG	4 cut(s)	219, 417, 432, 456
BstV1I	GCAGC	7 cut(s)	433, 637, 831, 874, 1164, 1467, 1488
BstV2I	GAAGAC	2 cut(s)	193, 795
BstX2I	RGATCY	3 cut(s)	4, 65, 1511
BstXI	CCANNNNNNTGG	1 cut(s)	814
BstYI	RGATCY	3 cut(s)	4, 65, 1511
BstZI	CGGCCG	1 cut(s)	667
Bsu36I	CCTNAGG	1 cut(s)	157
BtsCI	GGATG	5 cut(s)	27, 152, 940, 1081, 1448
BtsI	GCAGTG	3 cut(s)	431, 639, 821
BtsIMutI	CAGTG	5 cut(s)	398, 431, 639, 821, 1106
BveI	ACCTGC	1 cut(s)	906
CaiI	CAGNNNCTG	1 cut(s)	1439
CfoI	GCGC	5 cut(s)	221, 417, 456, 646, 1068
Cfr10I	RCCGGY	1 cut(s)	583
Cfr13I	GGNCC	5 cut(s)	46, 349, 399, 400, 1099
CseI	GACGC	4 cut(s)	302, 443, 527, 1355
Csp6I	GTAC	1 cut(s)	1421
CviAII	CATG	6 cut(s)	43, 211, 602, 1009, 1241, 1411
CviQI	GTAC	1 cut(s)	1421
DdeI	CTNAG	4 cut(s)	157, 1055, 1173, 1223
DrdI	GACNNNNNNGTC	2 cut(s)	197, 566
DriI	GACNNNNNGTC	1 cut(s)	100
DseDI	GACNNNNNNGTC	2 cut(s)	197, 566
EaeI	YGGCCR	6 cut(s)	121, 667, 1117, 1125, 1261, 1365
EagI	CGGCCG	1 cut(s)	667
Eam1104I	CTCTTC	2 cut(s)	897, 1400
Eam1105I	GACNNNNNGTC	1 cut(s)	100
EarI	CTCTTC	2 cut(s)	897, 1400
EciI	GGCGGA	2 cut(s)	64, 541
Ecl136II	GAGCTC	2 cut(s)	487, 745
EclXI	CGGCCG	1 cut(s)	667
Eco130I	CCWWGG	2 cut(s)	300, 1071
Eco147I	AGGCCT	1 cut(s)	162
Eco24I	GRGCYC	3 cut(s)	403, 489, 747
Eco31I	GGTCTC	2 cut(s)	1065, 1515
Eco32I	GATATC	1 cut(s)	1499
Eco47I	GGWCC	2 cut(s)	46, 349
Eco52I	CGGCCG	1 cut(s)	667
Eco53kI	GAGCTC	2 cut(s)	487, 745
Eco57I	CTGAAG	1 cut(s)	980
Eco81I	CCTNAGG	1 cut(s)	157
Eco88I	CYCGRG	2 cut(s)	344, 479
Eco91I	GGTNACC	1 cut(s)	586
EcoICRI	GAGCTC	2 cut(s)	487, 745
EcoO109I	RGGNCCY	2 cut(s)	349, 1099
EcoO65I	GGTNACC	1 cut(s)	586
EcoRII	CCWGG	1 cut(s)	1463
EcoRV	GATATC	1 cut(s)	1499
EcoT14I	CCWWGG	2 cut(s)	300, 1071
EcoT38I	GRGCYC	3 cut(s)	403, 489, 747
ErhI	CCWWGG	2 cut(s)	300, 1071
Esp3I	CGTCTC	1 cut(s)	229
FaeI	CATG	6 cut(s)	46, 214, 605, 1012, 1244, 1414
FaqI	GGGAC	1 cut(s)	258
FatI	CATG	6 cut(s)	42, 210, 601, 1008, 1240, 1410
FauI	CCCGC	4 cut(s)	224, 251, 374, 390
FbaI	TGATCA	2 cut(s)	135, 1534
FblI	GTMKAC	3 cut(s)	81, 291, 381
FokI	GGATG	5 cut(s)	14, 139, 947, 1088, 1455
FriOI	GRGCYC	3 cut(s)	403, 489, 747
GlaI	GCGC	5 cut(s)	220, 416, 455, 645, 1067
GsuI	CTGGAG	2 cut(s)	458, 731
HapII	CCGG	8 cut(s)	584, 636, 652, 666, 679, 689, 711, 873
HgaI	GACGC	4 cut(s)	302, 443, 527, 1355
HhaI	GCGC	5 cut(s)	221, 417, 456, 646, 1068
Hin1I	GRCGYC	5 cut(s)	231, 294, 378, 435, 519
Hin1II	CATG	6 cut(s)	46, 214, 605, 1012, 1244, 1414
Hin6I	GCGC	5 cut(s)	219, 415, 454, 644, 1066
HinP1I	GCGC	5 cut(s)	219, 415, 454, 644, 1066
HincII	GTYRAC	6 cut(s)	82, 292, 382, 1345, 1449, 1470
HindII	GTYRAC	6 cut(s)	82, 292, 382, 1345, 1449, 1470
HindIII	AAGCTT	2 cut(s)	506, 1001
HinfI	GANTC	7 cut(s)	101, 323, 564, 818, 899, 1237, 1528
HpaII	CCGG	8 cut(s)	584, 636, 652, 666, 679, 689, 711, 873
HphI	GGTGA	4 cut(s)	526, 580, 700, 1205
Hpy166II	GTNNAC	7 cut(s)	82, 292, 327, 382, 1345, 1449, 1470
Hpy188I	TCNGA	8 cut(s)	94, 190, 229, 376, 864, 999, 1143, 1236
Hpy188III	TCNNGA	6 cut(s)	275, 758, 771, 896, 1494, 1532
Hpy8I	GTNNAC	7 cut(s)	82, 292, 327, 382, 1345, 1449, 1470
HpyAV	CCTTC	3 cut(s)	850, 1043, 1112
HpyCH4III	ACNGT	2 cut(s)	61, 272
HpyCH4IV	ACGT	3 cut(s)	39, 231, 378
HpyCH4V	TGCA	5 cut(s)	462, 625, 847, 915, 1012
HpyF10VI	GCNNNNNNNGC	9 cut(s)	293, 302, 311, 407, 421, 484, 681, 790, 1009
HpyF3I	CTNAG	4 cut(s)	157, 1055, 1173, 1223
HpySE526I	ACGT	3 cut(s)	39, 231, 378
Hsp92I	GRCGYC	5 cut(s)	231, 294, 378, 435, 519
Hsp92II	CATG	6 cut(s)	46, 214, 605, 1012, 1244, 1414
HspAI	GCGC	5 cut(s)	219, 415, 454, 644, 1066
Ksp22I	TGATCA	2 cut(s)	135, 1534
LguI	GCTCTTC	2 cut(s)	897, 1400
LmnI	GCTCC	7 cut(s)	251, 484, 492, 554, 574, 750, 1073
Lsp1109I	GCAGC	7 cut(s)	433, 637, 831, 874, 1164, 1467, 1488
LweI	GCATC	2 cut(s)	165, 1066
MaeII	ACGT	3 cut(s)	39, 231, 378
MaeIII	GTNAC	2 cut(s)	586, 819
MbiI	CCGCTC	1 cut(s)	246
MboII	GAAGA	8 cut(s)	193, 795, 884, 986, 1406, 1409, 1417, 1439
MflI	RGATCY	3 cut(s)	4, 65, 1511
MhlI	GDGCHC	3 cut(s)	403, 489, 747
MlsI	TGGCCA	3 cut(s)	123, 1127, 1367
MluCI	AATT	3 cut(s)	850, 1013, 1273
MluNI	TGGCCA	3 cut(s)	123, 1127, 1367
MlyI	GAGTC	5 cut(s)	110, 332, 573, 827, 893
MmeI	TCCRAC	9 cut(s)	42, 117, 213, 252, 399, 759, 795, 912, 1359
Mox20I	TGGCCA	3 cut(s)	123, 1127, 1367
MscI	TGGCCA	3 cut(s)	123, 1127, 1367
MseI	TTAA	3 cut(s)	795, 1016, 1287
MslI	CAYNNNNRTG	1 cut(s)	1086
Msp20I	TGGCCA	3 cut(s)	123, 1127, 1367
MspI	CCGG	8 cut(s)	584, 636, 652, 666, 679, 689, 711, 873
MspR9I	CCNGG	1 cut(s)	1465
Mva1269I	GAATGC	1 cut(s)	618
MvaI	CCWGG	1 cut(s)	1465
MvnI	CGCG	4 cut(s)	219, 417, 432, 456
MwoI	GCNNNNNNNGC	9 cut(s)	293, 302, 311, 407, 421, 484, 681, 790, 1009
NlaIII	CATG	6 cut(s)	46, 214, 605, 1012, 1244, 1414
NlaIV	GGNNCC	5 cut(s)	6, 67, 401, 576, 1100
NmeAIII	GCCGAG	5 cut(s)	243, 436, 466, 547, 580
NmuCI	GTSAC	2 cut(s)	586, 819
NspI	RCATGY	1 cut(s)	1414
PaeI	GCATGC	1 cut(s)	1414
PaeR7I	CTCGAG	2 cut(s)	344, 479
PceI	AGGCCT	1 cut(s)	162
PciSI	GCTCTTC	2 cut(s)	897, 1400
PcsI	WCGNNNNNNNCGW	8 cut(s)	90, 264, 288, 318, 351, 414, 498, 567
PctI	GAATGC	1 cut(s)	618
PfeI	GAWTC	2 cut(s)	1237, 1528
PflFI	GACNNNGTC	4 cut(s)	353, 563, 596, 1349
PflMI	CCANNNNNTGG	1 cut(s)	1374
PleI	GAGTC	5 cut(s)	109, 331, 572, 826, 893
PpsI	GAGTC	5 cut(s)	109, 331, 572, 826, 893
PpuMI	RGGWCCY	1 cut(s)	349
Psp124BI	GAGCTC	2 cut(s)	489, 747
Psp5II	RGGWCCY	1 cut(s)	349
Psp6I	CCWGG	1 cut(s)	1463
PspEI	GGTNACC	1 cut(s)	586
PspGI	CCWGG	1 cut(s)	1463
PspN4I	GGNNCC	5 cut(s)	6, 67, 401, 576, 1100
PspOMI	GGGCCC	1 cut(s)	399
PspPI	GGNCC	5 cut(s)	46, 349, 399, 400, 1099
PspPPI	RGGWCCY	1 cut(s)	349
PspXI	VCTCGAGB	2 cut(s)	344, 479
PstI	CTGCAG	1 cut(s)	627
PstNI	CAGNNNCTG	1 cut(s)	1439
PsuI	RGATCY	3 cut(s)	4, 65, 1511
PsyI	GACNNNGTC	4 cut(s)	353, 563, 596, 1349
RsaI	GTAC	1 cut(s)	1422
RsaNI	GTAC	1 cut(s)	1421
RseI	CAYNNNNRTG	1 cut(s)	1086
SacI	GAGCTC	2 cut(s)	489, 747
SalI	GTCGAC	3 cut(s)	80, 290, 380
SapI	GCTCTTC	2 cut(s)	897, 1400
SaqAI	TTAA	3 cut(s)	795, 1016, 1287
Sau96I	GGNCC	5 cut(s)	46, 349, 399, 400, 1099
SchI	GAGTC	5 cut(s)	110, 332, 573, 827, 893
ScrFI	CCNGG	1 cut(s)	1465
SduI	GDGCHC	3 cut(s)	403, 489, 747
SfaNI	GCATC	2 cut(s)	165, 1066
SfcI	CTRYAG	1 cut(s)	623
Sfr274I	CTCGAG	2 cut(s)	344, 479
SgrDI	CGTCGACG	2 cut(s)	80, 290
SinI	GGWCC	2 cut(s)	46, 349
SlaI	CTCGAG	2 cut(s)	344, 479
SmiMI	CAYNNNNRTG	1 cut(s)	1086
SmlI	CTYRAG	5 cut(s)	98, 344, 479, 512, 1208
SmoI	CTYRAG	5 cut(s)	98, 344, 479, 512, 1208
SphI	GCATGC	1 cut(s)	1414
Sse9I	AATT	3 cut(s)	850, 1013, 1273
SseBI	AGGCCT	1 cut(s)	162
SstI	GAGCTC	2 cut(s)	489, 747
StuI	AGGCCT	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	1463
StyI	CCWWGG	2 cut(s)	300, 1071
TaaI	ACNGT	2 cut(s)	61, 272
TaiI	ACGT	3 cut(s)	42, 234, 381
TaqI	TCGA	9 cut(s)	81, 114, 291, 321, 345, 381, 480, 570, 648
TasI	AATT	3 cut(s)	850, 1013, 1273
TatI	WGTACW	1 cut(s)	1420
TauI	GCSGC	9 cut(s)	209, 299, 432, 440, 580, 583, 672, 675, 1266
TfiI	GAWTC	2 cut(s)	1237, 1528
Tru1I	TTAA	3 cut(s)	795, 1016, 1287
Tru9I	TTAA	3 cut(s)	795, 1016, 1287
TscAI	CASTG	5 cut(s)	398, 431, 646, 828, 1113
TseFI	GTSAC	2 cut(s)	586, 819
TseI	GCWGC	8 cut(s)	421, 625, 844, 887, 1177, 1455, 1476, 1540
Tsp45I	GTSAC	2 cut(s)	586, 819
TspDTI	ATGAA	1 cut(s)	1229
TspGWI	ACGGA	4 cut(s)	238, 576, 1016, 1311
TspRI	CASTG	5 cut(s)	398, 431, 646, 828, 1113
Tth111I	GACNNNGTC	4 cut(s)	353, 563, 596, 1349
Van91I	CCANNNNNTGG	1 cut(s)	1374
VpaK11BI	GGWCC	2 cut(s)	46, 349
XapI	RAATTY	1 cut(s)	850
XceI	RCATGY	1 cut(s)	1414
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1288, 1375
XhoI	CTCGAG	2 cut(s)	344, 479
XmiI	GTMKAC	3 cut(s)	81, 291, 381
ZraI	GACGTC	2 cut(s)	232, 379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.