Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000452

Physical Location & Seq

Genomic Coordinates Forward (+)

22723078 .. 22726317

Gene Structure 3240 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0229300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGAAGTTCAACATCGCGAATCCCACCACTGGGTGCCAGAAGAAGCTCGAGATCGACGATGATACCAAGCTCCGAGCATTCTGGGACAAGAGGATCAGTCAAGAAGTCAATGGTGATGCACTTGGCGAGGAGTTCAGGGGTTATGTGTTCAAAATCATGGGAGGCTGTGACAAGCAAGGCTTTCCTATGAAGCAAGGAGTGTTAACCCCAGGGCGTGTTCGCCTTTTGCTCCACAGGGGGACCCCATGCTTCCGAGGACATGGAAGGAGGAATGGTGAGCGAAGAAGGAAGTCTGTTCGTGGATGCATTGTTAGTCCAGACCTCTCTGTGTTGAACTTGGTTATTGTTAAGAAAGGTGACAATGACCTTCCTGGACTGACTGATGTTGAAAAGCCAAGAATGAGAGGTCCAAAGAGGGCTTCCAAGATCCGCAAGCTATTTAACCTCACCAAGGAGGATGATGTTCGGAAGTATGTCAACACTTACCGCAGAAAATTCACATCCAAAACTGGCAAGAATTGCAGCAAAGCTCCCAAAATTCAGAGGCTGGTTACTCCTTTGACTTTACAGAGGAAGCGAGCAAGGATTGCAGAGAAGAAGAAGAGAGTTGTAAAGGCCAAGTCAGAGGCTGCAGAGTATCAGAAGTTACTTGCTTCCAGGTTGAAGGAGCAGCGTGAGCGCCGCAGTGAGAGCTTAGCCAAGAAGAGATCAAGACTCTCCTCTGCCACCAAGCCATCTGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

248

Amino Acids

28.31

Weight (kDa)

10.75

Isoelectric Point (pI)

38.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S6e	PF01092	1 - 128	9.7e-53	Ribosomal protein S6e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000452)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	33
AccII	CGCG	1 cut(s)	17
AciI	CCGC	3 cut(s)	430, 487, 682
AclWI	GGATC	2 cut(s)	101, 421
AcsI	RAATTY	2 cut(s)	494, 537
AdeI	CACNNNGTG	1 cut(s)	33
AfiI	CCNNNNNNNGG	3 cut(s)	29, 30, 451
AgsI	TTSAA	5 cut(s)	10, 151, 334, 389, 664
AjnI	CCWGG	3 cut(s)	208, 370, 656
AjuI	GAANNNNNNNTTGG	2 cut(s)	403, 435
AluBI	AGCT	5 cut(s)	46, 70, 436, 530, 693
AluI	AGCT	5 cut(s)	46, 70, 436, 530, 693
AlwI	GGATC	2 cut(s)	101, 421
AlwNI	CAGNNNCTG	2 cut(s)	547, 629
Ama87I	CYCGRG	1 cut(s)	47
AoxI	GGCC	1 cut(s)	615
ApeKI	GCWGC	4 cut(s)	522, 629, 670, 740
ApoI	RAATTY	2 cut(s)	494, 537
AspLEI	GCGC	1 cut(s)	681
AspS9I	GGNCC	2 cut(s)	240, 407
AsuHPI	GGTGA	4 cut(s)	125, 287, 368, 439
AvaI	CYCGRG	1 cut(s)	47
AvaII	GGWCC	2 cut(s)	240, 407
BanI	GGYRCC	1 cut(s)	33
BbvI	GCAGC	4 cut(s)	534, 616, 682, 727
BccI	CCATC	1 cut(s)	742
BciT130I	CCWGG	3 cut(s)	210, 372, 658
BfmI	CTRYAG	1 cut(s)	630
BfoI	RGCGCY	1 cut(s)	682
BisI	GCNGC	5 cut(s)	523, 630, 671, 682, 741
BlpI	GCTNAGC	1 cut(s)	694
BlsI	GCNGC	5 cut(s)	524, 631, 672, 683, 742
Bme1390I	CCNGG	3 cut(s)	210, 372, 658
Bme18I	GGWCC	2 cut(s)	240, 407
BmeT110I	CYCGRG	1 cut(s)	47
BmgT120I	GGNCC	2 cut(s)	240, 407
BmiI	GGNNCC	3 cut(s)	35, 241, 242
BmrFI	CCNGG	3 cut(s)	210, 372, 658
BmrI	ACTGGG	1 cut(s)	39
BmsI	GCATC	2 cut(s)	106, 293
BmuI	ACTGGG	1 cut(s)	39
Bpu1102I	GCTNAGC	1 cut(s)	694
BsaJI	CCNNGG	4 cut(s)	208, 209, 253, 450
BsaXI	ACNNNNNCTCC	2 cut(s)	259, 289
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 30, 451
Bse1I	ACTGG	2 cut(s)	34, 514
BseBI	CCWGG	3 cut(s)	210, 372, 658
BseDI	CCNNGG	4 cut(s)	208, 209, 253, 450
BseGI	GGATG	3 cut(s)	308, 463, 500
BseLI	CCNNNNNNNGG	3 cut(s)	29, 30, 451
BseNI	ACTGG	2 cut(s)	34, 514
BseRI	GAGGAG	2 cut(s)	143, 709
BseXI	GCAGC	4 cut(s)	534, 616, 682, 727
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	1 cut(s)	617
BshNI	GGYRCC	1 cut(s)	33
BsiHKCI	CYCGRG	1 cut(s)	47
BslFI	GGGAC	2 cut(s)	98, 253
BslI	CCNNNNNNNGG	3 cut(s)	29, 30, 451
BsmFI	GGGAC	2 cut(s)	98, 253
BsmI	GAATGC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	617
BsoBI	CYCGRG	1 cut(s)	47
Bsp143I	GATC	4 cut(s)	51, 93, 426, 707
Bsp1720I	GCTNAGC	1 cut(s)	694
Bsp68I	TCGCGA	1 cut(s)	17
BspACI	CCGC	3 cut(s)	430, 487, 682
BspANI	GGCC	1 cut(s)	617
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	3 cut(s)	35, 241, 242
BspMAI	CTGCAG	1 cut(s)	634
BspPI	GGATC	2 cut(s)	101, 421
BspT107I	GGYRCC	1 cut(s)	33
BsrI	ACTGG	2 cut(s)	34, 514
BssECI	CCNNGG	4 cut(s)	208, 209, 253, 450
BssMI	GATC	4 cut(s)	51, 93, 426, 707
BssT1I	CCWWGG	1 cut(s)	450
Bst2UI	CCWGG	3 cut(s)	210, 372, 658
Bst6I	CTCTTC	2 cut(s)	596, 698
BstAPI	GCANNNNNTGC	2 cut(s)	519, 587
BstC8I	GCNNGC	2 cut(s)	434, 579
BstDEI	CTNAG	2 cut(s)	694, 744
BstENI	CCTNNNNNAGG	1 cut(s)	449
BstF5I	GGATG	3 cut(s)	308, 463, 500
BstFNI	CGCG	1 cut(s)	17
BstH2I	RGCGCY	1 cut(s)	682
BstHHI	GCGC	1 cut(s)	681
BstKTI	GATC	4 cut(s)	54, 96, 429, 710
BstMBI	GATC	4 cut(s)	51, 93, 426, 707
BstMWI	GCNNNNNNNGC	4 cut(s)	519, 587, 676, 690
BstNI	CCWGG	3 cut(s)	210, 372, 658
BstSCI	CCNGG	3 cut(s)	208, 370, 656
BstSFI	CTRYAG	1 cut(s)	630
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	4 cut(s)	534, 616, 682, 727
BstX2I	RGATCY	1 cut(s)	426
BstYI	RGATCY	1 cut(s)	426
BsuRI	GGCC	1 cut(s)	617
BtsCI	GGATG	3 cut(s)	308, 463, 500
BtsI	GCAGTG	1 cut(s)	691
BtsIMutI	CAGTG	2 cut(s)	27, 691
BtuMI	TCGCGA	1 cut(s)	17
Cac8I	GCNNGC	2 cut(s)	434, 579
CaiI	CAGNNNCTG	2 cut(s)	547, 629
CfoI	GCGC	1 cut(s)	681
Cfr13I	GGNCC	2 cut(s)	240, 407
CviAII	CATG	3 cut(s)	157, 246, 260
DdeI	CTNAG	2 cut(s)	694, 744
DpnI	GATC	4 cut(s)	53, 95, 428, 709
DpnII	GATC	4 cut(s)	51, 93, 426, 707
DraIII	CACNNNGTG	1 cut(s)	33
Eam1104I	CTCTTC	2 cut(s)	596, 698
EarI	CTCTTC	2 cut(s)	596, 698
Eco130I	CCWWGG	1 cut(s)	450
Eco47I	GGWCC	2 cut(s)	240, 407
Eco88I	CYCGRG	1 cut(s)	47
EcoNI	CCTNNNNNAGG	1 cut(s)	449
EcoO109I	RGGNCCY	1 cut(s)	240
EcoRII	CCWGG	3 cut(s)	208, 370, 656
EcoT14I	CCWWGG	1 cut(s)	450
EcoT22I	ATGCAT	1 cut(s)	308
ErhI	CCWWGG	1 cut(s)	450
FaeI	CATG	3 cut(s)	160, 249, 263
FaiI	YATR	6 cut(s)	144, 158, 188, 247, 261, 474
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FaqI	GGGAC	2 cut(s)	98, 253
FatI	CATG	3 cut(s)	156, 245, 259
Fnu4HI	GCNGC	5 cut(s)	523, 630, 671, 682, 741
FokI	GGATG	3 cut(s)	315, 470, 487
Fsp4HI	GCNGC	5 cut(s)	523, 630, 671, 682, 741
GlaI	GCGC	1 cut(s)	680
GluI	GCNGC	5 cut(s)	523, 630, 671, 682, 741
HaeII	RGCGCY	1 cut(s)	682
HaeIII	GGCC	1 cut(s)	617
HhaI	GCGC	1 cut(s)	681
Hin1II	CATG	3 cut(s)	160, 249, 263
Hin6I	GCGC	1 cut(s)	679
HinP1I	GCGC	1 cut(s)	679
HincII	GTYRAC	2 cut(s)	204, 478
HindII	GTYRAC	2 cut(s)	204, 478
HinfI	GANTC	2 cut(s)	19, 714
HpaI	GTTAAC	1 cut(s)	204
HphI	GGTGA	4 cut(s)	125, 287, 368, 439
Hpy166II	GTNNAC	2 cut(s)	204, 478
Hpy188I	TCNGA	6 cut(s)	74, 254, 468, 543, 625, 642
Hpy188III	TCNNGA	5 cut(s)	16, 49, 101, 317, 711
Hpy8I	GTNNAC	2 cut(s)	204, 478
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	4 cut(s)	258, 279, 377, 658
HpyCH4V	TGCA	5 cut(s)	119, 306, 522, 590, 632
HpyF10VI	GCNNNNNNNGC	4 cut(s)	519, 587, 676, 690
HpyF3I	CTNAG	2 cut(s)	694, 744
Hsp92II	CATG	3 cut(s)	160, 249, 263
HspAI	GCGC	1 cut(s)	679
KflI	GGGWCCC	1 cut(s)	240
KspAI	GTTAAC	1 cut(s)	204
Kzo9I	GATC	4 cut(s)	51, 93, 426, 707
LmnI	GCTCC	4 cut(s)	75, 234, 535, 667
Lsp1109I	GCAGC	4 cut(s)	534, 616, 682, 727
LweI	GCATC	2 cut(s)	106, 293
MaeIII	GTNAC	4 cut(s)	167, 356, 550, 645
MalI	GATC	4 cut(s)	53, 95, 428, 709
MboI	GATC	4 cut(s)	51, 93, 426, 707
MboII	GAAGA	6 cut(s)	52, 294, 607, 610, 613, 715
MflI	RGATCY	1 cut(s)	426
MluCI	AATT	3 cut(s)	494, 517, 537
MlyI	GAGTC	1 cut(s)	708
Mph1103I	ATGCAT	1 cut(s)	308
MseI	TTAA	3 cut(s)	203, 348, 441
MspR9I	CCNGG	3 cut(s)	210, 372, 658
Mva1269I	GAATGC	1 cut(s)	77
MvaI	CCWGG	3 cut(s)	210, 372, 658
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	4 cut(s)	519, 587, 676, 690
NdeII	GATC	4 cut(s)	51, 93, 426, 707
NlaIII	CATG	3 cut(s)	160, 249, 263
NlaIV	GGNNCC	3 cut(s)	35, 241, 242
NmuCI	GTSAC	2 cut(s)	167, 356
NruI	TCGCGA	1 cut(s)	17
NsiI	ATGCAT	1 cut(s)	308
PaeR7I	CTCGAG	1 cut(s)	47
PasI	CCCWGGG	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PctI	GAATGC	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	19
PfoI	TCCNGGA	1 cut(s)	370
PkrI	GCNGC	5 cut(s)	524, 631, 672, 683, 742
PleI	GAGTC	1 cut(s)	708
PpsI	GAGTC	1 cut(s)	708
PpuMI	RGGWCCY	1 cut(s)	240
Psp5II	RGGWCCY	1 cut(s)	240
Psp6I	CCWGG	3 cut(s)	208, 370, 656
PspGI	CCWGG	3 cut(s)	208, 370, 656
PspN4I	GGNNCC	3 cut(s)	35, 241, 242
PspPI	GGNCC	2 cut(s)	240, 407
PspPPI	RGGWCCY	1 cut(s)	240
PstI	CTGCAG	1 cut(s)	634
PstNI	CAGNNNCTG	2 cut(s)	547, 629
PsuI	RGATCY	1 cut(s)	426
RruI	TCGCGA	1 cut(s)	17
SaqAI	TTAA	3 cut(s)	203, 348, 441
SatI	GCNGC	5 cut(s)	523, 630, 671, 682, 741
Sau3AI	GATC	4 cut(s)	51, 93, 426, 707
Sau96I	GGNCC	2 cut(s)	240, 407
SchI	GAGTC	1 cut(s)	708
ScrFI	CCNGG	3 cut(s)	210, 372, 658
SfaNI	GCATC	2 cut(s)	106, 293
SfcI	CTRYAG	1 cut(s)	630
Sfr274I	CTCGAG	1 cut(s)	47
SinI	GGWCC	2 cut(s)	240, 407
SlaI	CTCGAG	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
Sse9I	AATT	3 cut(s)	494, 517, 537
SsiI	CCGC	3 cut(s)	430, 487, 682
StyD4I	CCNGG	3 cut(s)	208, 370, 656
StyI	CCWWGG	1 cut(s)	450
TaqI	TCGA	2 cut(s)	48, 54
TasI	AATT	3 cut(s)	494, 517, 537
TauI	GCSGC	1 cut(s)	684
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	3 cut(s)	203, 348, 441
Tru9I	TTAA	3 cut(s)	203, 348, 441
TscAI	CASTG	2 cut(s)	34, 691
TseFI	GTSAC	2 cut(s)	167, 356
TseI	GCWGC	4 cut(s)	522, 629, 670, 740
Tsp45I	GTSAC	2 cut(s)	167, 356
TspDTI	ATGAA	2 cut(s)	17, 203
TspRI	CASTG	2 cut(s)	34, 691
VpaK11BI	GGWCC	2 cut(s)	240, 407
XagI	CCTNNNNNAGG	1 cut(s)	449
XapI	RAATTY	2 cut(s)	494, 537
XhoI	CTCGAG	1 cut(s)	47
Zsp2I	ATGCAT	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.