Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 4 cut(s) | 127, 130, 277, 705 |
| AcuI | CTGAAG | 1 cut(s) | 651 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 133, 481, 646, 847, 848 |
| AgsI | TTSAA | 3 cut(s) | 74, 361, 722 |
| AjiI | CACGTC | 1 cut(s) | 83 |
| AjnI | CCWGG | 2 cut(s) | 15, 533 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 303, 335 |
| AluBI | AGCT | 3 cut(s) | 434, 496, 569 |
| AluI | AGCT | 3 cut(s) | 434, 496, 569 |
| Alw26I | GTCTC | 1 cut(s) | 180 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 351 |
| AoxI | GGCC | 2 cut(s) | 293, 518 |
| ApaI | GGGCCC | 1 cut(s) | 297 |
| ApeKI | GCWGC | 1 cut(s) | 412 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 67, 99, 515, 547 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 153 |
| AspS9I | GGNCC | 4 cut(s) | 19, 293, 294, 425 |
| AvaII | GGWCC | 2 cut(s) | 19, 425 |
| BaeGI | GKGCMC | 1 cut(s) | 297 |
| BanII | GRGCYC | 1 cut(s) | 297 |
| BbvCI | CCTCAGC | 1 cut(s) | 818 |
| BbvI | GCAGC | 1 cut(s) | 399 |
| BccI | CCATC | 4 cut(s) | 284, 298, 559, 625 |
| BciT130I | CCWGG | 2 cut(s) | 17, 535 |
| BcoDI | GTCTC | 1 cut(s) | 180 |
| BfaI | CTAG | 1 cut(s) | 762 |
| BglII | AGATCT | 1 cut(s) | 371 |
| BisI | GCNGC | 2 cut(s) | 130, 413 |
| BlsI | GCNGC | 2 cut(s) | 131, 414 |
| Bme1390I | CCNGG | 2 cut(s) | 17, 535 |
| Bme18I | GGWCC | 2 cut(s) | 19, 425 |
| BmgBI | CACGTC | 1 cut(s) | 83 |
| BmgT120I | GGNCC | 4 cut(s) | 19, 293, 294, 425 |
| BmiI | GGNNCC | 2 cut(s) | 295, 426 |
| BmrFI | CCNGG | 2 cut(s) | 17, 535 |
| BmsI | GCATC | 2 cut(s) | 652, 679 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 733, 765 |
| Bpu10I | CCTNAGC | 1 cut(s) | 818 |
| BsaBI | GATNNNNATC | 1 cut(s) | 606 |
| BsaJI | CCNNGG | 1 cut(s) | 38 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 133, 481, 646, 847, 848 |
| Bse1I | ACTGG | 2 cut(s) | 486, 561 |
| Bse8I | GATNNNNATC | 1 cut(s) | 606 |
| BseBI | CCWGG | 2 cut(s) | 17, 535 |
| BseDI | CCNNGG | 1 cut(s) | 38 |
| BseGI | GGATG | 3 cut(s) | 34, 543, 718 |
| BseJI | GATNNNNATC | 1 cut(s) | 606 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 133, 481, 646, 847, 848 |
| BseMII | CTCAG | 2 cut(s) | 291, 809 |
| BseNI | ACTGG | 2 cut(s) | 486, 561 |
| BseSI | GKGCMC | 1 cut(s) | 297 |
| BseXI | GCAGC | 1 cut(s) | 399 |
| BseYI | CCCAGC | 1 cut(s) | 132 |
| BshFI | GGCC | 2 cut(s) | 295, 520 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 133, 481, 646, 847, 848 |
| BsmAI | GTCTC | 1 cut(s) | 180 |
| BsnI | GGCC | 2 cut(s) | 295, 520 |
| Bsp120I | GGGCCC | 1 cut(s) | 293 |
| Bsp1286I | GDGCHC | 1 cut(s) | 297 |
| Bsp143I | GATC | 3 cut(s) | 371, 607, 715 |
| Bsp19I | CCATGG | 1 cut(s) | 38 |
| BspACI | CCGC | 4 cut(s) | 127, 130, 277, 705 |
| BspANI | GGCC | 2 cut(s) | 295, 520 |
| BspCNI | CTCAG | 2 cut(s) | 292, 810 |
| BspLI | GGNNCC | 2 cut(s) | 295, 426 |
| BsrI | ACTGG | 2 cut(s) | 486, 561 |
| BssECI | CCNNGG | 1 cut(s) | 38 |
| BssMI | GATC | 3 cut(s) | 371, 607, 715 |
| BssT1I | CCWWGG | 1 cut(s) | 38 |
| Bst2UI | CCWGG | 2 cut(s) | 17, 535 |
| Bst4CI | ACNGT | 1 cut(s) | 347 |
| Bst6I | CTCTTC | 3 cut(s) | 266, 764, 816 |
| BstDEI | CTNAG | 2 cut(s) | 300, 818 |
| BstDSI | CCRYGG | 1 cut(s) | 38 |
| BstF5I | GGATG | 3 cut(s) | 34, 543, 718 |
| BstKTI | GATC | 3 cut(s) | 374, 610, 718 |
| BstMAI | GTCTC | 1 cut(s) | 180 |
| BstMBI | GATC | 3 cut(s) | 371, 607, 715 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 129, 517 |
| BstNI | CCWGG | 2 cut(s) | 17, 535 |
| BstSCI | CCNGG | 2 cut(s) | 15, 533 |
| BstSLI | GKGCMC | 1 cut(s) | 297 |
| BstV1I | GCAGC | 1 cut(s) | 399 |
| BstX2I | RGATCY | 1 cut(s) | 371 |
| BstYI | RGATCY | 1 cut(s) | 371 |
| BsuRI | GGCC | 2 cut(s) | 295, 520 |
| BtgI | CCRYGG | 1 cut(s) | 38 |
| BtrI | CACGTC | 1 cut(s) | 83 |
| BtsCI | GGATG | 3 cut(s) | 34, 543, 718 |
| BtsI | GCAGTG | 1 cut(s) | 16 |
| BtsIMutI | CAGTG | 4 cut(s) | 16, 352, 479, 568 |
| CaiI | CAGNNNCTG | 1 cut(s) | 351 |
| Cfr13I | GGNCC | 4 cut(s) | 19, 293, 294, 425 |
| CseI | GACGC | 2 cut(s) | 517, 681 |
| CviAII | CATG | 3 cut(s) | 39, 442, 855 |
| CviJI | RGCY | 7 cut(s) | 295, 338, 434, 473, 496, 520, 569 |
| CviKI_1 | RGCY | 7 cut(s) | 295, 338, 434, 473, 496, 520, 569 |
| DdeI | CTNAG | 2 cut(s) | 300, 818 |
| DpnI | GATC | 3 cut(s) | 373, 609, 717 |
| DpnII | GATC | 3 cut(s) | 371, 607, 715 |
| Eam1104I | CTCTTC | 3 cut(s) | 266, 764, 816 |
| EarI | CTCTTC | 3 cut(s) | 266, 764, 816 |
| Eco130I | CCWWGG | 1 cut(s) | 38 |
| Eco24I | GRGCYC | 1 cut(s) | 297 |
| Eco47I | GGWCC | 2 cut(s) | 19, 425 |
| Eco57I | CTGAAG | 1 cut(s) | 651 |
| EcoO109I | RGGNCCY | 1 cut(s) | 294 |
| EcoRII | CCWGG | 2 cut(s) | 15, 533 |
| EcoT14I | CCWWGG | 1 cut(s) | 38 |
| EcoT38I | GRGCYC | 1 cut(s) | 297 |
| ErhI | CCWWGG | 1 cut(s) | 38 |
| FaeI | CATG | 3 cut(s) | 42, 445, 858 |
| FatI | CATG | 3 cut(s) | 38, 441, 854 |
| FauI | CCCGC | 1 cut(s) | 698 |
| FauNDI | CATATG | 1 cut(s) | 598 |
| Fnu4HI | GCNGC | 2 cut(s) | 130, 413 |
| FokI | GGATG | 3 cut(s) | 21, 550, 725 |
| FriOI | GRGCYC | 1 cut(s) | 297 |
| Fsp4HI | GCNGC | 2 cut(s) | 130, 413 |
| FspBI | CTAG | 1 cut(s) | 762 |
| GluI | GCNGC | 2 cut(s) | 130, 413 |
| GsaI | CCCAGC | 1 cut(s) | 136 |
| HaeIII | GGCC | 2 cut(s) | 295, 520 |
| HgaI | GACGC | 2 cut(s) | 517, 681 |
| Hin1II | CATG | 3 cut(s) | 42, 445, 858 |
| HindIII | AAGCTT | 1 cut(s) | 432 |
| HinfI | GANTC | 4 cut(s) | 137, 324, 731, 781 |
| Hpy188I | TCNGA | 6 cut(s) | 185, 289, 301, 371, 736, 786 |
| Hpy188III | TCNNGA | 5 cut(s) | 352, 611, 719, 750, 762 |
| HpyAV | CCTTC | 5 cut(s) | 68, 99, 498, 510, 537 |
| HpyCH4III | ACNGT | 1 cut(s) | 347 |
| HpyCH4IV | ACGT | 1 cut(s) | 82 |
| HpyCH4V | TGCA | 2 cut(s) | 557, 833 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 129, 517 |
| HpyF3I | CTNAG | 2 cut(s) | 300, 818 |
| HpySE526I | ACGT | 1 cut(s) | 82 |
| Hsp92II | CATG | 3 cut(s) | 42, 445, 858 |
| Kzo9I | GATC | 3 cut(s) | 371, 607, 715 |
| Lsp1109I | GCAGC | 1 cut(s) | 399 |
| LweI | GCATC | 2 cut(s) | 652, 679 |
| MaeI | CTAG | 1 cut(s) | 762 |
| MaeII | ACGT | 1 cut(s) | 82 |
| MaeIII | GTNAC | 1 cut(s) | 242 |
| MalI | GATC | 3 cut(s) | 373, 609, 717 |
| MboI | GATC | 3 cut(s) | 371, 607, 715 |
| MfeI | CAATTG | 1 cut(s) | 486 |
| MflI | RGATCY | 1 cut(s) | 371 |
| MhlI | GDGCHC | 1 cut(s) | 297 |
| MluCI | AATT | 3 cut(s) | 486, 698, 795 |
| MlyI | GAGTC | 2 cut(s) | 333, 790 |
| MmeI | TCCRAC | 3 cut(s) | 301, 362, 764 |
| MroXI | GAANNNNTTC | 1 cut(s) | 153 |
| MseI | TTAA | 1 cut(s) | 576 |
| MspA1I | CMGCKG | 1 cut(s) | 132 |
| MspR9I | CCNGG | 2 cut(s) | 17, 535 |
| MunI | CAATTG | 1 cut(s) | 486 |
| MvaI | CCWGG | 2 cut(s) | 17, 535 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 129, 517 |
| NcoI | CCATGG | 1 cut(s) | 38 |
| NdeI | CATATG | 1 cut(s) | 598 |
| NdeII | GATC | 3 cut(s) | 371, 607, 715 |
| NlaIII | CATG | 3 cut(s) | 42, 445, 858 |
| NlaIV | GGNNCC | 2 cut(s) | 295, 426 |
| PdmI | GAANNNNTTC | 1 cut(s) | 153 |
| PfeI | GAWTC | 2 cut(s) | 137, 731 |
| PflFI | GACNNNGTC | 1 cut(s) | 347 |
| PfoI | TCCNGGA | 1 cut(s) | 533 |
| PkrI | GCNGC | 2 cut(s) | 131, 414 |
| PleI | GAGTC | 2 cut(s) | 332, 789 |
| PpsI | GAGTC | 2 cut(s) | 332, 789 |
| Psp6I | CCWGG | 2 cut(s) | 15, 533 |
| PspFI | CCCAGC | 1 cut(s) | 132 |
| PspGI | CCWGG | 2 cut(s) | 15, 533 |
| PspN4I | GGNNCC | 2 cut(s) | 295, 426 |
| PspOMI | GGGCCC | 1 cut(s) | 293 |
| PspPI | GGNCC | 4 cut(s) | 19, 293, 294, 425 |
| PstNI | CAGNNNCTG | 1 cut(s) | 351 |
| PsuI | RGATCY | 1 cut(s) | 371 |
| PsyI | GACNNNGTC | 1 cut(s) | 347 |
| SaqAI | TTAA | 1 cut(s) | 576 |
| SatI | GCNGC | 2 cut(s) | 130, 413 |
| Sau3AI | GATC | 3 cut(s) | 371, 607, 715 |
| Sau96I | GGNCC | 4 cut(s) | 19, 293, 294, 425 |
| SchI | GAGTC | 2 cut(s) | 333, 790 |
| ScrFI | CCNGG | 2 cut(s) | 17, 535 |
| SduI | GDGCHC | 1 cut(s) | 297 |
| SetI | ASST | 8 cut(s) | 85, 319, 366, 436, 498, 571, 811, 824 |
| SfaNI | GCATC | 2 cut(s) | 652, 679 |
| SinI | GGWCC | 2 cut(s) | 19, 425 |
| Sse9I | AATT | 3 cut(s) | 486, 698, 795 |
| SsiI | CCGC | 4 cut(s) | 127, 130, 277, 705 |
| SspMI | CTAG | 1 cut(s) | 762 |
| StyD4I | CCNGG | 2 cut(s) | 15, 533 |
| StyI | CCWWGG | 1 cut(s) | 38 |
| TaaI | ACNGT | 1 cut(s) | 347 |
| TaiI | ACGT | 1 cut(s) | 85 |
| TaqI | TCGA | 1 cut(s) | 751 |
| TasI | AATT | 3 cut(s) | 486, 698, 795 |
| TauI | GCSGC | 1 cut(s) | 132 |
| TfiI | GAWTC | 2 cut(s) | 137, 731 |
| Tru1I | TTAA | 1 cut(s) | 576 |
| Tru9I | TTAA | 1 cut(s) | 576 |
| TscAI | CASTG | 4 cut(s) | 16, 352, 486, 568 |
| TseI | GCWGC | 1 cut(s) | 412 |
| TspDTI | ATGAA | 3 cut(s) | 219, 618, 843 |
| TspGWI | ACGGA | 1 cut(s) | 213 |
| TspRI | CASTG | 4 cut(s) | 16, 352, 486, 568 |
| Tth111I | GACNNNGTC | 1 cut(s) | 347 |
| VpaK11BI | GGWCC | 2 cut(s) | 19, 425 |
| XbaI | TCTAGA | 1 cut(s) | 761 |
| XmnI | GAANNNNTTC | 1 cut(s) | 153 |
| XspI | CTAG | 1 cut(s) | 762 |