Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 310 |
| Acc65I | GGTACC | 1 cut(s) | 437 |
| AccB1I | GGYRCC | 2 cut(s) | 91, 437 |
| AccI | GTMKAC | 1 cut(s) | 156 |
| AciI | CCGC | 6 cut(s) | 41, 65, 534, 635, 985, 1129 |
| AclWI | GGATC | 2 cut(s) | 118, 674 |
| AcoI | YGGCCR | 1 cut(s) | 388 |
| AcsI | RAATTY | 3 cut(s) | 537, 728, 1043 |
| AfaI | GTAC | 8 cut(s) | 114, 373, 439, 544, 882, 961, 1016, 1094 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 133, 584, 700 |
| AflIII | ACRYGT | 2 cut(s) | 336, 469 |
| AgsI | TTSAA | 5 cut(s) | 121, 663, 851, 916, 940 |
| AjnI | CCWGG | 2 cut(s) | 47, 828 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 571, 603 |
| AluBI | AGCT | 4 cut(s) | 38, 56, 215, 776 |
| AluI | AGCT | 4 cut(s) | 38, 56, 215, 776 |
| Alw21I | GWGCWC | 1 cut(s) | 818 |
| Alw26I | GTCTC | 1 cut(s) | 261 |
| Alw44I | GTGCAC | 1 cut(s) | 814 |
| AlwI | GGATC | 2 cut(s) | 118, 674 |
| AoxI | GGCC | 1 cut(s) | 388 |
| ApaLI | GTGCAC | 1 cut(s) | 814 |
| ApeKI | GCWGC | 4 cut(s) | 38, 500, 629, 632 |
| ApoI | RAATTY | 3 cut(s) | 537, 728, 1043 |
| AseI | ATTAAT | 1 cut(s) | 357 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 855 |
| Asp718I | GGTACC | 1 cut(s) | 437 |
| AspLEI | GCGC | 2 cut(s) | 311, 505 |
| AsuC2I | CCSGG | 3 cut(s) | 264, 281, 397 |
| AsuHPI | GGTGA | 5 cut(s) | 34, 251, 280, 733, 781 |
| AxyI | CCTNAGG | 1 cut(s) | 350 |
| BaeGI | GKGCMC | 1 cut(s) | 818 |
| BanI | GGYRCC | 2 cut(s) | 91, 437 |
| Bbv12I | GWGCWC | 1 cut(s) | 818 |
| BbvI | GCAGC | 4 cut(s) | 25, 512, 616, 619 |
| BccI | CCATC | 4 cut(s) | 404, 857, 930, 1024 |
| BceAI | ACGGC | 2 cut(s) | 150, 403 |
| BciT130I | CCWGG | 2 cut(s) | 49, 830 |
| BclI | TGATCA | 1 cut(s) | 24 |
| BcnI | CCSGG | 3 cut(s) | 264, 281, 397 |
| BcoDI | GTCTC | 1 cut(s) | 261 |
| BfmI | CTRYAG | 1 cut(s) | 498 |
| BfoI | RGCGCY | 1 cut(s) | 506 |
| BisI | GCNGC | 5 cut(s) | 39, 65, 501, 630, 633 |
| BlsI | GCNGC | 5 cut(s) | 40, 66, 502, 631, 634 |
| Bme1390I | CCNGG | 5 cut(s) | 49, 264, 281, 397, 830 |
| BmiI | GGNNCC | 3 cut(s) | 93, 439, 478 |
| BmrFI | CCNGG | 5 cut(s) | 49, 264, 281, 397, 830 |
| BmsI | GCATC | 3 cut(s) | 834, 898, 1131 |
| BpmI | CTGGAG | 1 cut(s) | 237 |
| BpuMI | CCSGG | 3 cut(s) | 264, 281, 397 |
| BsaI | GGTCTC | 1 cut(s) | 261 |
| BsaJI | CCNNGG | 3 cut(s) | 48, 194, 405 |
| BsaWI | WCCGGW | 2 cut(s) | 290, 1116 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 210, 240, 258, 288, 864, 894 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 133, 584, 700 |
| Bse1I | ACTGG | 1 cut(s) | 823 |
| Bse21I | CCTNAGG | 1 cut(s) | 350 |
| BseBI | CCWGG | 2 cut(s) | 49, 830 |
| BseDI | CCNNGG | 3 cut(s) | 48, 194, 405 |
| BseGI | GGATG | 4 cut(s) | 415, 825, 922, 1125 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 133, 584, 700 |
| BseMII | CTCAG | 2 cut(s) | 768, 1062 |
| BseNI | ACTGG | 1 cut(s) | 823 |
| BseSI | GKGCMC | 1 cut(s) | 818 |
| BseXI | GCAGC | 4 cut(s) | 25, 512, 616, 619 |
| BseYI | CCCAGC | 1 cut(s) | 56 |
| BshFI | GGCC | 1 cut(s) | 390 |
| BshNI | GGYRCC | 2 cut(s) | 91, 437 |
| BsiHKAI | GWGCWC | 1 cut(s) | 818 |
| BsiSI | CCGG | 5 cut(s) | 263, 281, 291, 397, 1117 |
| BslFI | GGGAC | 1 cut(s) | 189 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 133, 584, 700 |
| BsmAI | GTCTC | 1 cut(s) | 261 |
| BsmFI | GGGAC | 1 cut(s) | 189 |
| BsmI | GAATGC | 1 cut(s) | 302 |
| BsnI | GGCC | 1 cut(s) | 390 |
| Bso31I | GGTCTC | 1 cut(s) | 261 |
| Bsp1286I | GDGCHC | 1 cut(s) | 818 |
| Bsp1407I | TGTACA | 1 cut(s) | 542 |
| BspACI | CCGC | 6 cut(s) | 41, 65, 534, 635, 985, 1129 |
| BspANI | GGCC | 1 cut(s) | 390 |
| BspCNI | CTCAG | 2 cut(s) | 769, 1063 |
| BspHI | TCATGA | 2 cut(s) | 208, 859 |
| BspLI | GGNNCC | 3 cut(s) | 93, 439, 478 |
| BspMAI | CTGCAG | 1 cut(s) | 502 |
| BspPI | GGATC | 2 cut(s) | 118, 674 |
| BspT107I | GGYRCC | 2 cut(s) | 91, 437 |
| BspTNI | GGTCTC | 1 cut(s) | 261 |
| BsrGI | TGTACA | 1 cut(s) | 542 |
| BsrI | ACTGG | 1 cut(s) | 823 |
| BssECI | CCNNGG | 3 cut(s) | 48, 194, 405 |
| BssNAI | GTATAC | 1 cut(s) | 157 |
| BssT1I | CCWWGG | 1 cut(s) | 405 |
| Bst1107I | GTATAC | 1 cut(s) | 157 |
| Bst2UI | CCWGG | 2 cut(s) | 49, 830 |
| Bst4CI | ACNGT | 3 cut(s) | 189, 463, 562 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 306 |
| BstAUI | TGTACA | 1 cut(s) | 542 |
| BstC8I | GCNNGC | 2 cut(s) | 16, 1101 |
| BstDEI | CTNAG | 4 cut(s) | 350, 527, 777, 1071 |
| BstF5I | GGATG | 4 cut(s) | 415, 825, 922, 1125 |
| BstH2I | RGCGCY | 1 cut(s) | 506 |
| BstHHI | GCGC | 2 cut(s) | 311, 505 |
| BstMAI | GTCTC | 1 cut(s) | 261 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 44, 53, 306, 641, 822, 1128 |
| BstNI | CCWGG | 2 cut(s) | 49, 830 |
| BstNSI | RCATGY | 3 cut(s) | 340, 473, 1099 |
| BstSCI | CCNGG | 5 cut(s) | 47, 262, 279, 395, 828 |
| BstSFI | CTRYAG | 1 cut(s) | 498 |
| BstSLI | GKGCMC | 1 cut(s) | 818 |
| BstV1I | GCAGC | 4 cut(s) | 25, 512, 616, 619 |
| BstX2I | RGATCY | 1 cut(s) | 123 |
| BstYI | RGATCY | 1 cut(s) | 123 |
| BstZ17I | GTATAC | 1 cut(s) | 157 |
| Bsu36I | CCTNAGG | 1 cut(s) | 350 |
| BsuRI | GGCC | 1 cut(s) | 390 |
| BtsCI | GGATG | 4 cut(s) | 415, 825, 922, 1125 |
| BtsI | GCAGTG | 1 cut(s) | 9 |
| BtsIMutI | CAGTG | 6 cut(s) | 9, 147, 185, 457, 459, 816 |
| Cac8I | GCNNGC | 2 cut(s) | 16, 1101 |
| CciI | TCATGA | 2 cut(s) | 208, 859 |
| CfoI | GCGC | 2 cut(s) | 311, 505 |
| Csp6I | GTAC | 8 cut(s) | 113, 372, 438, 543, 881, 960, 1015, 1093 |
| CviAII | CATG | 9 cut(s) | 107, 209, 272, 337, 470, 860, 1018, 1096, 1132 |
| CviQI | GTAC | 8 cut(s) | 113, 372, 438, 543, 881, 960, 1015, 1093 |
| DdeI | CTNAG | 4 cut(s) | 350, 527, 777, 1071 |
| EaeI | YGGCCR | 1 cut(s) | 388 |
| Eco130I | CCWWGG | 1 cut(s) | 405 |
| Eco31I | GGTCTC | 1 cut(s) | 261 |
| Eco81I | CCTNAGG | 1 cut(s) | 350 |
| EcoRII | CCWGG | 2 cut(s) | 47, 828 |
| EcoT14I | CCWWGG | 1 cut(s) | 405 |
| ErhI | CCWWGG | 1 cut(s) | 405 |
| FaeI | CATG | 9 cut(s) | 110, 212, 275, 340, 473, 863, 1021, 1099, 1135 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 113, 145 |
| FaqI | GGGAC | 1 cut(s) | 189 |
| FatI | CATG | 9 cut(s) | 106, 208, 271, 336, 469, 859, 1017, 1095, 1131 |
| FauI | CCCGC | 1 cut(s) | 992 |
| FbaI | TGATCA | 1 cut(s) | 24 |
| FblI | GTMKAC | 1 cut(s) | 156 |
| Fnu4HI | GCNGC | 5 cut(s) | 39, 65, 501, 630, 633 |
| FokI | GGATG | 4 cut(s) | 422, 812, 909, 1112 |
| Fsp4HI | GCNGC | 5 cut(s) | 39, 65, 501, 630, 633 |
| FspAI | RTGCGCAY | 1 cut(s) | 310 |
| FspI | TGCGCA | 1 cut(s) | 310 |
| GlaI | GCGC | 2 cut(s) | 310, 504 |
| GluI | GCNGC | 5 cut(s) | 39, 65, 501, 630, 633 |
| GsaI | CCCAGC | 1 cut(s) | 60 |
| GsuI | CTGGAG | 1 cut(s) | 237 |
| HaeII | RGCGCY | 1 cut(s) | 506 |
| HaeIII | GGCC | 1 cut(s) | 390 |
| HapII | CCGG | 5 cut(s) | 263, 281, 291, 397, 1117 |
| HhaI | GCGC | 2 cut(s) | 311, 505 |
| Hin1II | CATG | 9 cut(s) | 110, 212, 275, 340, 473, 863, 1021, 1099, 1135 |
| Hin6I | GCGC | 2 cut(s) | 309, 503 |
| HinP1I | GCGC | 2 cut(s) | 309, 503 |
| HinfI | GANTC | 4 cut(s) | 222, 736, 949, 1113 |
| HpaII | CCGG | 5 cut(s) | 263, 281, 291, 397, 1117 |
| HphI | GGTGA | 5 cut(s) | 34, 251, 280, 733, 781 |
| Hpy166II | GTNNAC | 3 cut(s) | 157, 288, 816 |
| Hpy188I | TCNGA | 6 cut(s) | 198, 325, 608, 684, 927, 1072 |
| Hpy188III | TCNNGA | 5 cut(s) | 209, 509, 764, 860, 937 |
| Hpy8I | GTNNAC | 3 cut(s) | 157, 288, 816 |
| HpyAV | CCTTC | 1 cut(s) | 632 |
| HpyCH4III | ACNGT | 3 cut(s) | 189, 463, 562 |
| HpyCH4V | TGCA | 7 cut(s) | 33, 300, 500, 572, 644, 816, 1122 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 44, 53, 306, 641, 822, 1128 |
| HpyF3I | CTNAG | 4 cut(s) | 350, 527, 777, 1071 |
| Hsp92II | CATG | 9 cut(s) | 110, 212, 275, 340, 473, 863, 1021, 1099, 1135 |
| HspAI | GCGC | 2 cut(s) | 309, 503 |
| KpnI | GGTACC | 1 cut(s) | 441 |
| Ksp22I | TGATCA | 1 cut(s) | 24 |
| LmnI | GCTCC | 1 cut(s) | 1135 |
| Lsp1109I | GCAGC | 4 cut(s) | 25, 512, 616, 619 |
| LweI | GCATC | 3 cut(s) | 834, 898, 1131 |
| MaeIII | GTNAC | 2 cut(s) | 247, 971 |
| MboII | GAAGA | 2 cut(s) | 133, 499 |
| MflI | RGATCY | 1 cut(s) | 123 |
| MhlI | GDGCHC | 1 cut(s) | 818 |
| MluCI | AATT | 5 cut(s) | 420, 537, 728, 1034, 1043 |
| MlyI | GAGTC | 1 cut(s) | 943 |
| MmeI | TCCRAC | 4 cut(s) | 30, 283, 714, 868 |
| MroXI | GAANNNNTTC | 1 cut(s) | 855 |
| MseI | TTAA | 1 cut(s) | 357 |
| MslI | CAYNNNNRTG | 2 cut(s) | 150, 1130 |
| MspA1I | CMGCKG | 1 cut(s) | 67 |
| MspI | CCGG | 5 cut(s) | 263, 281, 291, 397, 1117 |
| MspR9I | CCNGG | 5 cut(s) | 49, 264, 281, 397, 830 |
| Mva1269I | GAATGC | 1 cut(s) | 302 |
| MvaI | CCWGG | 2 cut(s) | 49, 830 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 44, 53, 306, 641, 822, 1128 |
| NciI | CCSGG | 3 cut(s) | 264, 281, 397 |
| NlaIII | CATG | 9 cut(s) | 110, 212, 275, 340, 473, 863, 1021, 1099, 1135 |
| NlaIV | GGNNCC | 3 cut(s) | 93, 439, 478 |
| NsbI | TGCGCA | 1 cut(s) | 310 |
| NspI | RCATGY | 3 cut(s) | 340, 473, 1099 |
| PagI | TCATGA | 2 cut(s) | 208, 859 |
| PciI | ACATGT | 2 cut(s) | 336, 469 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 231 |
| PctI | GAATGC | 1 cut(s) | 302 |
| PdmI | GAANNNNTTC | 1 cut(s) | 855 |
| PfeI | GAWTC | 3 cut(s) | 222, 736, 1113 |
| PflFI | GACNNNGTC | 1 cut(s) | 272 |
| PkrI | GCNGC | 5 cut(s) | 40, 66, 502, 631, 634 |
| PleI | GAGTC | 1 cut(s) | 943 |
| PpsI | GAGTC | 1 cut(s) | 943 |
| PscI | ACATGT | 2 cut(s) | 336, 469 |
| PshBI | ATTAAT | 1 cut(s) | 357 |
| Psp6I | CCWGG | 2 cut(s) | 47, 828 |
| PspFI | CCCAGC | 1 cut(s) | 56 |
| PspGI | CCWGG | 2 cut(s) | 47, 828 |
| PspN4I | GGNNCC | 3 cut(s) | 93, 439, 478 |
| PstI | CTGCAG | 1 cut(s) | 502 |
| PsuI | RGATCY | 1 cut(s) | 123 |
| PsyI | GACNNNGTC | 1 cut(s) | 272 |
| RsaI | GTAC | 8 cut(s) | 114, 373, 439, 544, 882, 961, 1016, 1094 |
| RsaNI | GTAC | 8 cut(s) | 113, 372, 438, 543, 881, 960, 1015, 1093 |
| RseI | CAYNNNNRTG | 2 cut(s) | 150, 1130 |
| SaqAI | TTAA | 1 cut(s) | 357 |
| SatI | GCNGC | 5 cut(s) | 39, 65, 501, 630, 633 |
| SchI | GAGTC | 1 cut(s) | 943 |
| ScrFI | CCNGG | 5 cut(s) | 49, 264, 281, 397, 830 |
| SduI | GDGCHC | 1 cut(s) | 818 |
| SfaNI | GCATC | 3 cut(s) | 834, 898, 1131 |
| SfcI | CTRYAG | 1 cut(s) | 498 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 150, 1130 |
| Sse9I | AATT | 5 cut(s) | 420, 537, 728, 1034, 1043 |
| SsiI | CCGC | 6 cut(s) | 41, 65, 534, 635, 985, 1129 |
| StyD4I | CCNGG | 5 cut(s) | 47, 262, 279, 395, 828 |
| StyI | CCWWGG | 1 cut(s) | 405 |
| TaaI | ACNGT | 3 cut(s) | 189, 463, 562 |
| TasI | AATT | 5 cut(s) | 420, 537, 728, 1034, 1043 |
| TatI | WGTACW | 4 cut(s) | 542, 880, 1014, 1092 |
| TauI | GCSGC | 1 cut(s) | 67 |
| TfiI | GAWTC | 3 cut(s) | 222, 736, 1113 |
| Tru1I | TTAA | 1 cut(s) | 357 |
| Tru9I | TTAA | 1 cut(s) | 357 |
| TscAI | CASTG | 6 cut(s) | 16, 154, 192, 457, 466, 823 |
| TseI | GCWGC | 4 cut(s) | 38, 500, 629, 632 |
| TspDTI | ATGAA | 7 cut(s) | 123, 225, 579, 741, 848, 944, 1034 |
| TspGWI | ACGGA | 1 cut(s) | 469 |
| TspRI | CASTG | 6 cut(s) | 16, 154, 192, 457, 466, 823 |
| Tth111I | GACNNNGTC | 1 cut(s) | 272 |
| VneI | GTGCAC | 1 cut(s) | 814 |
| VspI | ATTAAT | 1 cut(s) | 357 |
| XapI | RAATTY | 3 cut(s) | 537, 728, 1043 |
| XceI | RCATGY | 3 cut(s) | 340, 473, 1099 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 607 |
| XmiI | GTMKAC | 1 cut(s) | 156 |
| XmnI | GAANNNNTTC | 1 cut(s) | 855 |