Rorug07G0196500

Homeodomain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000452
Physical Location & Seq
Forward (+)
16935295 .. 16936333
1039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0196500.1

Sequence Viewer

Length: 630 bp
ATGGCCGCCGCAATTGCTAACTTGGTTGTTGCTTTTCAACTGTTCGACTCGGCACCTGTTTCCTTTAGGGCAGCGAGGGTTGCTGCAGTACATGATGACCATTGGTATATGGTCAAGCGTTTTCTCAGTCCGAAGGCTAAATTCCCAGGTTTCAATAGCACTATTCTAACAATTTGGCGTATCAAATCTGGTTTAACCATTCAAGATGTGGGGGAGCGGAACACCATGCTGGTTTTAGGTGAATTGGACGGACTCGAGTCGGTGGAGTTGTGCCATTGTTTGGGAGTGGACACTTGGATTGTTGTGAAAGGGCTCCCCTTGGCTCCGGATTCTGTTAGGATTGTGGCTTCTTTGAACATGACGCATCAGGTTGTGACAAGCTCCTTGTTAGGGAGAAAGAGAGTTGCTTGCTTGAACGGCAGCGGCGGCAATGAAGTGCTGGCTTCGGGTGCAGAGAATCAAGGGGCTGTAATGGAGCTTGAGGACCTGAATGGGCAGAATGCTCTTACAAGGAATAAGAGAAAGGTTGCAAGAACATTAGATCAGACTGGGAAACGCTATCTTGCTCTTCCTGCTCCGGTTCTTCAAGTGGAAAAGAATGTTTCGGTGGTGCTACAGCATAAAAAATAA

Protein Analysis

209

Amino Acids

22.71

Weight (kDa)

9.4

Isoelectric Point (pI)

37.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000452)

Species Orthologous Gene IDs
rosa_rugosa Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 52
AccB7I CCANNNNNTGG 1 cut(s) 280
AccBSI CCGCTC 1 cut(s) 217
AccIII TCCGGA 1 cut(s) 325
AciI CCGC 5 cut(s) 6, 9, 217, 423, 426
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 140
AfaI GTAC 1 cut(s) 90
AfiI CCNNNNNNNGG 2 cut(s) 280, 390
AgsI TTSAA 6 cut(s) 38, 154, 203, 355, 415, 587
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 2 cut(s) 381, 478
AluI AGCT 2 cut(s) 381, 478
Ama87I CYCGRG 1 cut(s) 254
Aor13HI TCCGGA 1 cut(s) 325
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 3 cut(s) 71, 83, 420
ApoI RAATTY 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 484
AsuHPI GGTGA 1 cut(s) 251
AvaI CYCGRG 1 cut(s) 254
AvaII GGWCC 1 cut(s) 484
BanI GGYRCC 1 cut(s) 52
BanII GRGCYC 1 cut(s) 315
BbvI GCAGC 3 cut(s) 70, 83, 432
BceAI ACGGC 1 cut(s) 433
BciT130I CCWGG 1 cut(s) 147
BfmI CTRYAG 2 cut(s) 84, 614
BisI GCNGC 7 cut(s) 6, 9, 72, 84, 421, 424, 427
BlsI GCNGC 7 cut(s) 7, 10, 73, 85, 422, 425, 428
Bme1390I CCNGG 1 cut(s) 147
Bme18I GGWCC 1 cut(s) 484
BmeT110I CYCGRG 1 cut(s) 254
BmgT120I GGNCC 1 cut(s) 484
BmiI GGNNCC 3 cut(s) 54, 314, 324
BmrFI CCNGG 1 cut(s) 147
BmrI ACTGGG 1 cut(s) 558
BmsI GCATC 1 cut(s) 373
BmuI ACTGGG 1 cut(s) 558
BoxI GACNNNNGTC 1 cut(s) 256
BpuEI CTTGAG 1 cut(s) 500
BsaJI CCNNGG 2 cut(s) 145, 318
BsaWI WCCGGW 2 cut(s) 325, 577
Bsc4I CCNNNNNNNGG 2 cut(s) 280, 390
Bse1I ACTGG 1 cut(s) 553
Bse3DI GCAATG 1 cut(s) 436
BseAI TCCGGA 1 cut(s) 325
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 2 cut(s) 145, 318
BseLI CCNNNNNNNGG 2 cut(s) 280, 390
BseMI GCAATG 1 cut(s) 436
BseMII CTCAG 1 cut(s) 139
BseNI ACTGG 1 cut(s) 553
BseXI GCAGC 3 cut(s) 70, 83, 432
BsgI GTGCAG 1 cut(s) 471
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 52
BsiHKCI CYCGRG 1 cut(s) 254
BsiSI CCGG 2 cut(s) 326, 578
BslI CCNNNNNNNGG 2 cut(s) 280, 390
BsmI GAATGC 1 cut(s) 505
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 315
Bsp13I TCCGGA 1 cut(s) 325
Bsp143I GATC 1 cut(s) 541
BspACI CCGC 5 cut(s) 6, 9, 217, 423, 426
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 138
BspEI TCCGGA 1 cut(s) 325
BspLI GGNNCC 3 cut(s) 54, 314, 324
BspMAI CTGCAG 1 cut(s) 88
BspQI GCTCTTC 1 cut(s) 573
BspT107I GGYRCC 1 cut(s) 52
BsrBI CCGCTC 1 cut(s) 217
BsrDI GCAATG 1 cut(s) 436
BsrI ACTGG 1 cut(s) 553
BssECI CCNNGG 2 cut(s) 145, 318
BssMI GATC 1 cut(s) 541
BssT1I CCWWGG 1 cut(s) 318
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 42
Bst6I CTCTTC 1 cut(s) 573
BstC8I GCNNGC 2 cut(s) 409, 441
BstDEI CTNAG 1 cut(s) 125
BstKTI GATC 1 cut(s) 544
BstMBI GATC 1 cut(s) 541
BstMWI GCNNNNNNNGC 6 cut(s) 14, 80, 417, 426, 449, 572
BstNI CCWGG 1 cut(s) 147
BstPAI GACNNNNGTC 1 cut(s) 256
BstSCI CCNGG 1 cut(s) 145
BstSFI CTRYAG 2 cut(s) 84, 614
BstV1I GCAGC 3 cut(s) 70, 83, 432
BsuRI GGCC 1 cut(s) 5
Cac8I GCNNGC 2 cut(s) 409, 441
Cfr13I GGNCC 1 cut(s) 484
CseI GACGC 1 cut(s) 370
Csp6I GTAC 1 cut(s) 89
CviAII CATG 3 cut(s) 92, 226, 358
CviJI RGCY 9 cut(s) 5, 137, 313, 323, 347, 381, 443, 467, 478
CviKI_1 RGCY 9 cut(s) 5, 137, 313, 323, 347, 381, 443, 467, 478
CviQI GTAC 1 cut(s) 89
DdeI CTNAG 1 cut(s) 125
DpnI GATC 1 cut(s) 543
DpnII GATC 1 cut(s) 541
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 573
EarI CTCTTC 1 cut(s) 573
Eco130I CCWWGG 1 cut(s) 318
Eco24I GRGCYC 1 cut(s) 315
Eco47I GGWCC 1 cut(s) 484
Eco88I CYCGRG 1 cut(s) 254
EcoO109I RGGNCCY 1 cut(s) 484
EcoRII CCWGG 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 318
EcoT38I GRGCYC 1 cut(s) 315
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 3 cut(s) 95, 229, 361
FaiI YATR 6 cut(s) 93, 108, 110, 227, 359, 621
FatI CATG 3 cut(s) 91, 225, 357
Fnu4HI GCNGC 7 cut(s) 6, 9, 72, 84, 421, 424, 427
FriOI GRGCYC 1 cut(s) 315
Fsp4HI GCNGC 7 cut(s) 6, 9, 72, 84, 421, 424, 427
GluI GCNGC 7 cut(s) 6, 9, 72, 84, 421, 424, 427
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 326, 578
HgaI GACGC 1 cut(s) 370
Hin1II CATG 3 cut(s) 95, 229, 361
HinfI GANTC 5 cut(s) 47, 252, 257, 329, 457
HpaII CCGG 2 cut(s) 326, 578
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 1 cut(s) 289
Hpy188I TCNGA 2 cut(s) 132, 546
Hpy188III TCNNGA 2 cut(s) 203, 326
Hpy8I GTNNAC 1 cut(s) 289
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 1 cut(s) 42
HpyCH4V TGCA 3 cut(s) 86, 452, 530
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 80, 417, 426, 449, 572
HpyF3I CTNAG 1 cut(s) 125
Hsp92II CATG 3 cut(s) 95, 229, 361
Kpn2I TCCGGA 1 cut(s) 325
Kzo9I GATC 1 cut(s) 541
LguI GCTCTTC 1 cut(s) 573
LmnI GCTCC 6 cut(s) 214, 318, 328, 386, 475, 580
Lsp1109I GCAGC 3 cut(s) 70, 83, 432
LweI GCATC 1 cut(s) 373
MaeIII GTNAC 1 cut(s) 373
MalI GATC 1 cut(s) 543
MbiI CCGCTC 1 cut(s) 217
MboI GATC 1 cut(s) 541
MboII GAAGA 2 cut(s) 560, 575
MfeI CAATTG 1 cut(s) 12
MhlI GDGCHC 1 cut(s) 315
MluCI AATT 4 cut(s) 12, 140, 171, 242
MlyI GAGTC 3 cut(s) 41, 246, 266
MnlI CCTC 2 cut(s) 69, 475
MroI TCCGGA 1 cut(s) 325
MseI TTAA 1 cut(s) 194
MspA1I CMGCKG 1 cut(s) 423
MspI CCGG 2 cut(s) 326, 578
MspR9I CCNGG 1 cut(s) 147
MunI CAATTG 1 cut(s) 12
Mva1269I GAATGC 1 cut(s) 505
MvaI CCWGG 1 cut(s) 147
MwoI GCNNNNNNNGC 6 cut(s) 14, 80, 417, 426, 449, 572
NdeII GATC 1 cut(s) 541
NlaIII CATG 3 cut(s) 95, 229, 361
NlaIV GGNNCC 3 cut(s) 54, 314, 324
NmeAIII GCCGAG 1 cut(s) 29
NmuCI GTSAC 1 cut(s) 373
PaeR7I CTCGAG 1 cut(s) 254
PciSI GCTCTTC 1 cut(s) 573
PctI GAATGC 1 cut(s) 505
PfeI GAWTC 2 cut(s) 329, 457
PflMI CCANNNNNTGG 1 cut(s) 280
PkrI GCNGC 7 cut(s) 7, 10, 73, 85, 422, 425, 428
PleI GAGTC 3 cut(s) 41, 246, 265
PpsI GAGTC 3 cut(s) 41, 246, 265
PpuMI RGGWCCY 1 cut(s) 484
PshAI GACNNNNGTC 1 cut(s) 256
Psp5II RGGWCCY 1 cut(s) 484
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
PspN4I GGNNCC 3 cut(s) 54, 314, 324
PspPI GGNCC 1 cut(s) 484
PspPPI RGGWCCY 1 cut(s) 484
PspXI VCTCGAGB 1 cut(s) 254
PstI CTGCAG 1 cut(s) 88
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
SapI GCTCTTC 1 cut(s) 573
SaqAI TTAA 1 cut(s) 194
SatI GCNGC 7 cut(s) 6, 9, 72, 84, 421, 424, 427
Sau3AI GATC 1 cut(s) 541
Sau96I GGNCC 1 cut(s) 484
SchI GAGTC 3 cut(s) 41, 246, 266
ScrFI CCNGG 1 cut(s) 147
SduI GDGCHC 1 cut(s) 315
SetI ASST 8 cut(s) 58, 151, 241, 372, 383, 480, 489, 528
SfaNI GCATC 1 cut(s) 373
SfcI CTRYAG 2 cut(s) 84, 614
Sfr274I CTCGAG 1 cut(s) 254
SinI GGWCC 1 cut(s) 484
SlaI CTCGAG 1 cut(s) 254
SmlI CTYRAG 2 cut(s) 254, 479
SmoI CTYRAG 2 cut(s) 254, 479
Sse9I AATT 4 cut(s) 12, 140, 171, 242
SsiI CCGC 5 cut(s) 6, 9, 217, 423, 426
StyD4I CCNGG 1 cut(s) 145
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 1 cut(s) 42
TaqI TCGA 2 cut(s) 45, 255
TasI AATT 4 cut(s) 12, 140, 171, 242
TatI WGTACW 1 cut(s) 88
TauI GCSGC 4 cut(s) 8, 11, 426, 429
TfiI GAWTC 2 cut(s) 329, 457
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TseFI GTSAC 1 cut(s) 373
TseI GCWGC 3 cut(s) 71, 83, 420
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 1 cut(s) 447
TspGWI ACGGA 1 cut(s) 264
Van91I CCANNNNNTGG 1 cut(s) 280
VpaK11BI GGWCC 1 cut(s) 484
XapI RAATTY 1 cut(s) 140
XcmI CCANNNNNNNNNTGG 1 cut(s) 205
XhoI CTCGAG 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.