Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Det1 | PF09737 | 120 - 512 | 1.9e-146 | De-etiolated protein 1 Det1 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 933 |
| Acc36I | ACCTGC | 1 cut(s) | 933 |
| AccB1I | GGYRCC | 2 cut(s) | 569, 918 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1409 |
| AccI | GTMKAC | 1 cut(s) | 1373 |
| AccIII | TCCGGA | 1 cut(s) | 1530 |
| AciI | CCGC | 5 cut(s) | 40, 388, 566, 775, 995 |
| AclWI | GGATC | 2 cut(s) | 528, 815 |
| AcsI | RAATTY | 9 cut(s) | 30, 45, 100, 158, 420, 1039, 1105, 1120, 1382 |
| AcuI | CTGAAG | 1 cut(s) | 866 |
| AcvI | CACGTG | 1 cut(s) | 721 |
| AcyI | GRCGYC | 1 cut(s) | 570 |
| AfaI | GTAC | 6 cut(s) | 179, 340, 516, 581, 666, 903 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 62, 443, 565, 1409 |
| AflII | CTTAAG | 1 cut(s) | 1357 |
| AflIII | ACRYGT | 1 cut(s) | 718 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 684 |
| AjnI | CCWGG | 3 cut(s) | 230, 552, 1396 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1266, 1298 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 134, 166 |
| AluBI | AGCT | 9 cut(s) | 303, 316, 449, 703, 1028, 1054, 1223, 1409, 1511 |
| AluI | AGCT | 9 cut(s) | 303, 316, 449, 703, 1028, 1054, 1223, 1409, 1511 |
| Alw26I | GTCTC | 2 cut(s) | 249, 1004 |
| AlwI | GGATC | 2 cut(s) | 528, 815 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1409 |
| Ama87I | CYCGRG | 1 cut(s) | 1155 |
| Aor13HI | TCCGGA | 1 cut(s) | 1530 |
| AoxI | GGCC | 3 cut(s) | 555, 763, 841 |
| ApeKI | GCWGC | 2 cut(s) | 313, 1504 |
| ApoI | RAATTY | 9 cut(s) | 30, 45, 100, 158, 420, 1039, 1105, 1120, 1382 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 854 |
| AspLEI | GCGC | 1 cut(s) | 572 |
| AspS9I | GGNCC | 6 cut(s) | 142, 528, 556, 835, 913, 1400 |
| AsuC2I | CCSGG | 2 cut(s) | 63, 140 |
| AsuHPI | GGTGA | 2 cut(s) | 479, 527 |
| AsuNHI | GCTAGC | 1 cut(s) | 1219 |
| AvaI | CYCGRG | 1 cut(s) | 1155 |
| AvaII | GGWCC | 5 cut(s) | 142, 528, 835, 913, 1400 |
| BaeGI | GKGCMC | 1 cut(s) | 140 |
| BanI | GGYRCC | 2 cut(s) | 569, 918 |
| BanII | GRGCYC | 1 cut(s) | 1256 |
| BbrPI | CACGTG | 1 cut(s) | 721 |
| BbvI | GCAGC | 2 cut(s) | 325, 1516 |
| BccI | CCATC | 3 cut(s) | 153, 164, 500 |
| BciT130I | CCWGG | 3 cut(s) | 232, 554, 1398 |
| BclI | TGATCA | 1 cut(s) | 1081 |
| BcnI | CCSGG | 2 cut(s) | 63, 140 |
| BcoDI | GTCTC | 2 cut(s) | 249, 1004 |
| BfaI | CTAG | 3 cut(s) | 84, 264, 1220 |
| BfoI | RGCGCY | 1 cut(s) | 573 |
| BfrI | CTTAAG | 1 cut(s) | 1357 |
| BfuAI | ACCTGC | 1 cut(s) | 933 |
| BisI | GCNGC | 2 cut(s) | 314, 1505 |
| BlsI | GCNGC | 2 cut(s) | 315, 1506 |
| Bme1390I | CCNGG | 5 cut(s) | 63, 140, 232, 554, 1398 |
| Bme18I | GGWCC | 5 cut(s) | 142, 528, 835, 913, 1400 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 684 |
| BmeT110I | CYCGRG | 1 cut(s) | 1155 |
| BmgT120I | GGNCC | 6 cut(s) | 142, 528, 556, 835, 913, 1400 |
| BmiI | GGNNCC | 4 cut(s) | 60, 571, 836, 920 |
| BmrFI | CCNGG | 5 cut(s) | 63, 140, 232, 554, 1398 |
| BmsI | GCATC | 2 cut(s) | 418, 1206 |
| BmtI | GCTAGC | 1 cut(s) | 1223 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1243, 1275 |
| BpuEI | CTTGAG | 1 cut(s) | 514 |
| BpuMI | CCSGG | 2 cut(s) | 63, 140 |
| BsaAI | YACGTR | 1 cut(s) | 721 |
| BsaHI | GRCGYC | 1 cut(s) | 570 |
| BsaJI | CCNNGG | 1 cut(s) | 838 |
| BsaWI | WCCGGW | 2 cut(s) | 413, 1530 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 435, 465 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 62, 443, 565, 1409 |
| Bse118I | RCCGGY | 1 cut(s) | 915 |
| Bse1I | ACTGG | 1 cut(s) | 522 |
| BseAI | TCCGGA | 1 cut(s) | 1530 |
| BseBI | CCWGG | 3 cut(s) | 232, 554, 1398 |
| BseDI | CCNNGG | 1 cut(s) | 838 |
| BseGI | GGATG | 4 cut(s) | 175, 511, 1339, 1456 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 62, 443, 565, 1409 |
| BseMII | CTCAG | 2 cut(s) | 156, 1157 |
| BseNI | ACTGG | 1 cut(s) | 522 |
| BseRI | GAGGAG | 2 cut(s) | 304, 459 |
| BseSI | GKGCMC | 1 cut(s) | 140 |
| BseXI | GCAGC | 2 cut(s) | 325, 1516 |
| BseYI | CCCAGC | 2 cut(s) | 454, 982 |
| BsgI | GTGCAG | 2 cut(s) | 244, 743 |
| Bsh1285I | CGRYCG | 2 cut(s) | 40, 1318 |
| BshFI | GGCC | 3 cut(s) | 557, 765, 843 |
| BshNI | GGYRCC | 2 cut(s) | 569, 918 |
| BsiEI | CGRYCG | 2 cut(s) | 40, 1318 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1155 |
| BsiSI | CCGG | 7 cut(s) | 56, 63, 140, 414, 916, 1426, 1531 |
| BslFI | GGGAC | 4 cut(s) | 92, 446, 589, 691 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 62, 443, 565, 1409 |
| BsmAI | GTCTC | 2 cut(s) | 249, 1004 |
| BsmBI | CGTCTC | 1 cut(s) | 1004 |
| BsmFI | GGGAC | 4 cut(s) | 92, 446, 589, 691 |
| BsnI | GGCC | 3 cut(s) | 557, 765, 843 |
| BsoBI | CYCGRG | 1 cut(s) | 1155 |
| Bsp1286I | GDGCHC | 2 cut(s) | 140, 1256 |
| Bsp13I | TCCGGA | 1 cut(s) | 1530 |
| Bsp143I | GATC | 7 cut(s) | 271, 520, 820, 973, 1081, 1315, 1336 |
| BspACI | CCGC | 5 cut(s) | 40, 388, 566, 775, 995 |
| BspANI | GGCC | 3 cut(s) | 557, 765, 843 |
| BspCNI | CTCAG | 2 cut(s) | 157, 1158 |
| BspEI | TCCGGA | 1 cut(s) | 1530 |
| BspHI | TCATGA | 1 cut(s) | 424 |
| BspLI | GGNNCC | 4 cut(s) | 60, 571, 836, 920 |
| BspMI | ACCTGC | 1 cut(s) | 933 |
| BspOI | GCTAGC | 1 cut(s) | 1223 |
| BspPI | GGATC | 2 cut(s) | 528, 815 |
| BspT107I | GGYRCC | 2 cut(s) | 569, 918 |
| BspTI | CTTAAG | 1 cut(s) | 1357 |
| BsrFI | RCCGGY | 1 cut(s) | 915 |
| BsrI | ACTGG | 1 cut(s) | 522 |
| BssAI | RCCGGY | 1 cut(s) | 915 |
| BssECI | CCNNGG | 1 cut(s) | 838 |
| BssMI | GATC | 7 cut(s) | 271, 520, 820, 973, 1081, 1315, 1336 |
| BssNAI | GTATAC | 1 cut(s) | 1374 |
| BssNI | GRCGYC | 1 cut(s) | 570 |
| BssT1I | CCWWGG | 1 cut(s) | 838 |
| Bst1107I | GTATAC | 1 cut(s) | 1374 |
| Bst2UI | CCWGG | 3 cut(s) | 232, 554, 1398 |
| Bst4CI | ACNGT | 3 cut(s) | 323, 745, 1371 |
| BstACI | GRCGYC | 1 cut(s) | 570 |
| BstAFI | CTTAAG | 1 cut(s) | 1357 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 925 |
| BstBAI | YACGTR | 1 cut(s) | 721 |
| BstC8I | GCNNGC | 6 cut(s) | 568, 594, 751, 1152, 1221, 1509 |
| BstDEI | CTNAG | 2 cut(s) | 165, 1166 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 441 |
| BstF5I | GGATG | 4 cut(s) | 175, 511, 1339, 1456 |
| BstH2I | RGCGCY | 1 cut(s) | 573 |
| BstHHI | GCGC | 1 cut(s) | 572 |
| BstKTI | GATC | 7 cut(s) | 274, 523, 823, 976, 1084, 1318, 1339 |
| BstMAI | GTCTC | 2 cut(s) | 249, 1004 |
| BstMBI | GATC | 7 cut(s) | 271, 520, 820, 973, 1081, 1315, 1336 |
| BstMCI | CGRYCG | 2 cut(s) | 40, 1318 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 563, 925, 992, 1422 |
| BstNI | CCWGG | 3 cut(s) | 232, 554, 1398 |
| BstNSI | RCATGY | 2 cut(s) | 1150, 1154 |
| BstSCI | CCNGG | 5 cut(s) | 61, 138, 230, 552, 1396 |
| BstSLI | GKGCMC | 1 cut(s) | 140 |
| BstV1I | GCAGC | 2 cut(s) | 325, 1516 |
| BstX2I | RGATCY | 1 cut(s) | 820 |
| BstYI | RGATCY | 1 cut(s) | 820 |
| BstZ17I | GTATAC | 1 cut(s) | 1374 |
| BsuRI | GGCC | 3 cut(s) | 557, 765, 843 |
| BtsCI | GGATG | 4 cut(s) | 175, 511, 1339, 1456 |
| BtsIMutI | CAGTG | 3 cut(s) | 162, 267, 328 |
| BveI | ACCTGC | 1 cut(s) | 933 |
| Cac8I | GCNNGC | 6 cut(s) | 568, 594, 751, 1152, 1221, 1509 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1409 |
| CciI | TCATGA | 1 cut(s) | 424 |
| CfoI | GCGC | 1 cut(s) | 572 |
| Cfr10I | RCCGGY | 1 cut(s) | 915 |
| Cfr13I | GGNCC | 6 cut(s) | 142, 528, 556, 835, 913, 1400 |
| CsiI | ACCWGGT | 1 cut(s) | 1396 |
| Csp6I | GTAC | 6 cut(s) | 178, 339, 515, 580, 665, 902 |
| CviAII | CATG | 7 cut(s) | 121, 376, 425, 539, 1006, 1147, 1151 |
| CviQI | GTAC | 6 cut(s) | 178, 339, 515, 580, 665, 902 |
| DdeI | CTNAG | 2 cut(s) | 165, 1166 |
| DinI | GGCGCC | 1 cut(s) | 571 |
| DpnI | GATC | 7 cut(s) | 273, 522, 822, 975, 1083, 1317, 1338 |
| DpnII | GATC | 7 cut(s) | 271, 520, 820, 973, 1081, 1315, 1336 |
| DriI | GACNNNNNGTC | 1 cut(s) | 684 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 684 |
| Eco130I | CCWWGG | 1 cut(s) | 838 |
| Eco147I | AGGCCT | 1 cut(s) | 843 |
| Eco24I | GRGCYC | 1 cut(s) | 1256 |
| Eco32I | GATATC | 1 cut(s) | 960 |
| Eco47I | GGWCC | 5 cut(s) | 142, 528, 835, 913, 1400 |
| Eco57I | CTGAAG | 1 cut(s) | 866 |
| Eco72I | CACGTG | 1 cut(s) | 721 |
| Eco88I | CYCGRG | 1 cut(s) | 1155 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 441 |
| EcoO109I | RGGNCCY | 1 cut(s) | 528 |
| EcoRI | GAATTC | 1 cut(s) | 1039 |
| EcoRII | CCWGG | 3 cut(s) | 230, 552, 1396 |
| EcoRV | GATATC | 1 cut(s) | 960 |
| EcoT14I | CCWWGG | 1 cut(s) | 838 |
| EcoT22I | ATGCAT | 1 cut(s) | 1152 |
| EcoT38I | GRGCYC | 1 cut(s) | 1256 |
| EgeI | GGCGCC | 1 cut(s) | 571 |
| EheI | GGCGCC | 1 cut(s) | 571 |
| ErhI | CCWWGG | 1 cut(s) | 838 |
| Esp3I | CGTCTC | 1 cut(s) | 1004 |
| FaeI | CATG | 7 cut(s) | 124, 379, 428, 542, 1009, 1150, 1154 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 350, 382, 467, 499, 1180, 1212, 1340, 1372 |
| FaqI | GGGAC | 4 cut(s) | 92, 446, 589, 691 |
| FatI | CATG | 7 cut(s) | 120, 375, 424, 538, 1005, 1146, 1150 |
| FauI | CCCGC | 1 cut(s) | 559 |
| FbaI | TGATCA | 1 cut(s) | 1081 |
| FblI | GTMKAC | 1 cut(s) | 1373 |
| Fnu4HI | GCNGC | 2 cut(s) | 314, 1505 |
| FokI | GGATG | 4 cut(s) | 182, 518, 1326, 1443 |
| FriOI | GRGCYC | 1 cut(s) | 1256 |
| Fsp4HI | GCNGC | 2 cut(s) | 314, 1505 |
| FspBI | CTAG | 3 cut(s) | 84, 264, 1220 |
| GlaI | GCGC | 1 cut(s) | 571 |
| GluI | GCNGC | 2 cut(s) | 314, 1505 |
| GsaI | CCCAGC | 2 cut(s) | 458, 986 |
| HaeII | RGCGCY | 1 cut(s) | 573 |
| HaeIII | GGCC | 3 cut(s) | 557, 765, 843 |
| HapII | CCGG | 7 cut(s) | 56, 63, 140, 414, 916, 1426, 1531 |
| HhaI | GCGC | 1 cut(s) | 572 |
| Hin1I | GRCGYC | 1 cut(s) | 570 |
| Hin1II | CATG | 7 cut(s) | 124, 379, 428, 542, 1009, 1150, 1154 |
| Hin6I | GCGC | 1 cut(s) | 570 |
| HinP1I | GCGC | 1 cut(s) | 570 |
| HincII | GTYRAC | 2 cut(s) | 883, 1332 |
| HindII | GTYRAC | 2 cut(s) | 883, 1332 |
| HinfI | GANTC | 3 cut(s) | 396, 459, 644 |
| HpaII | CCGG | 7 cut(s) | 56, 63, 140, 414, 916, 1426, 1531 |
| HphI | GGTGA | 2 cut(s) | 479, 527 |
| Hpy166II | GTNNAC | 4 cut(s) | 76, 883, 1332, 1374 |
| Hpy188I | TCNGA | 7 cut(s) | 8, 207, 282, 525, 641, 825, 1038 |
| Hpy8I | GTNNAC | 4 cut(s) | 76, 883, 1332, 1374 |
| HpyAV | CCTTC | 4 cut(s) | 617, 892, 1266, 1356 |
| HpyCH4III | ACNGT | 3 cut(s) | 323, 745, 1371 |
| HpyCH4IV | ACGT | 1 cut(s) | 720 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 563, 925, 992, 1422 |
| HpyF3I | CTNAG | 2 cut(s) | 165, 1166 |
| HpySE526I | ACGT | 1 cut(s) | 720 |
| Hsp92I | GRCGYC | 1 cut(s) | 570 |
| Hsp92II | CATG | 7 cut(s) | 124, 379, 428, 542, 1009, 1150, 1154 |
| HspAI | GCGC | 1 cut(s) | 570 |
| KasI | GGCGCC | 1 cut(s) | 569 |
| Kpn2I | TCCGGA | 1 cut(s) | 1530 |
| Ksp22I | TGATCA | 1 cut(s) | 1081 |
| Kzo9I | GATC | 7 cut(s) | 271, 520, 820, 973, 1081, 1315, 1336 |
| LmnI | GCTCC | 3 cut(s) | 64, 446, 1159 |
| Lsp1109I | GCAGC | 2 cut(s) | 325, 1516 |
| LweI | GCATC | 2 cut(s) | 418, 1206 |
| MabI | ACCWGGT | 1 cut(s) | 1396 |
| MaeI | CTAG | 3 cut(s) | 84, 264, 1220 |
| MaeII | ACGT | 1 cut(s) | 720 |
| MaeIII | GTNAC | 2 cut(s) | 327, 383 |
| MalI | GATC | 7 cut(s) | 273, 522, 822, 975, 1083, 1317, 1338 |
| MboI | GATC | 7 cut(s) | 271, 520, 820, 973, 1081, 1315, 1336 |
| MboII | GAAGA | 8 cut(s) | 266, 704, 824, 859, 862, 1222, 1225, 1434 |
| MfeI | CAATTG | 2 cut(s) | 597, 672 |
| MflI | RGATCY | 1 cut(s) | 820 |
| MhlI | GDGCHC | 2 cut(s) | 140, 1256 |
| Mly113I | GGCGCC | 1 cut(s) | 570 |
| MlyI | GAGTC | 3 cut(s) | 390, 468, 653 |
| MmeI | TCCRAC | 2 cut(s) | 421, 848 |
| Mph1103I | ATGCAT | 1 cut(s) | 1152 |
| MroI | TCCGGA | 1 cut(s) | 1530 |
| MroXI | GAANNNNTTC | 1 cut(s) | 854 |
| MseI | TTAA | 7 cut(s) | 549, 1236, 1301, 1358, 1386, 1392, 1518 |
| MspA1I | CMGCKG | 2 cut(s) | 775, 1511 |
| MspCI | CTTAAG | 1 cut(s) | 1357 |
| MspI | CCGG | 7 cut(s) | 56, 63, 140, 414, 916, 1426, 1531 |
| MspR9I | CCNGG | 5 cut(s) | 63, 140, 232, 554, 1398 |
| MunI | CAATTG | 2 cut(s) | 597, 672 |
| MvaI | CCWGG | 3 cut(s) | 232, 554, 1398 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 563, 925, 992, 1422 |
| NarI | GGCGCC | 1 cut(s) | 570 |
| NciI | CCSGG | 2 cut(s) | 63, 140 |
| NdeII | GATC | 7 cut(s) | 271, 520, 820, 973, 1081, 1315, 1336 |
| NheI | GCTAGC | 1 cut(s) | 1219 |
| NlaIII | CATG | 7 cut(s) | 124, 379, 428, 542, 1009, 1150, 1154 |
| NlaIV | GGNNCC | 4 cut(s) | 60, 571, 836, 920 |
| NmuCI | GTSAC | 1 cut(s) | 327 |
| NsiI | ATGCAT | 1 cut(s) | 1152 |
| NspI | RCATGY | 2 cut(s) | 1150, 1154 |
| PaeI | GCATGC | 1 cut(s) | 1154 |
| PagI | TCATGA | 1 cut(s) | 424 |
| PaqCI | CACCTGC | 1 cut(s) | 933 |
| PceI | AGGCCT | 1 cut(s) | 843 |
| PdmI | GAANNNNTTC | 1 cut(s) | 854 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1409 |
| PkrI | GCNGC | 2 cut(s) | 315, 1506 |
| Ple19I | CGATCG | 1 cut(s) | 1318 |
| PleI | GAGTC | 3 cut(s) | 390, 467, 652 |
| PluTI | GGCGCC | 1 cut(s) | 573 |
| PmaCI | CACGTG | 1 cut(s) | 721 |
| PmlI | CACGTG | 1 cut(s) | 721 |
| PpsI | GAGTC | 3 cut(s) | 390, 467, 652 |
| Ppu21I | YACGTR | 1 cut(s) | 721 |
| PpuMI | RGGWCCY | 1 cut(s) | 528 |
| Psp5II | RGGWCCY | 1 cut(s) | 528 |
| Psp6I | CCWGG | 3 cut(s) | 230, 552, 1396 |
| PspCI | CACGTG | 1 cut(s) | 721 |
| PspFI | CCCAGC | 2 cut(s) | 454, 982 |
| PspGI | CCWGG | 3 cut(s) | 230, 552, 1396 |
| PspN4I | GGNNCC | 4 cut(s) | 60, 571, 836, 920 |
| PspPI | GGNCC | 6 cut(s) | 142, 528, 556, 835, 913, 1400 |
| PspPPI | RGGWCCY | 1 cut(s) | 528 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1409 |
| PsuI | RGATCY | 1 cut(s) | 820 |
| PvuI | CGATCG | 1 cut(s) | 1318 |
| PvuII | CAGCTG | 1 cut(s) | 1511 |
| RsaI | GTAC | 6 cut(s) | 179, 340, 516, 581, 666, 903 |
| RsaNI | GTAC | 6 cut(s) | 178, 339, 515, 580, 665, 902 |
| SaqAI | TTAA | 7 cut(s) | 549, 1236, 1301, 1358, 1386, 1392, 1518 |
| SatI | GCNGC | 2 cut(s) | 314, 1505 |
| Sau3AI | GATC | 7 cut(s) | 271, 520, 820, 973, 1081, 1315, 1336 |
| Sau96I | GGNCC | 6 cut(s) | 142, 528, 556, 835, 913, 1400 |
| SchI | GAGTC | 3 cut(s) | 390, 468, 653 |
| ScrFI | CCNGG | 5 cut(s) | 63, 140, 232, 554, 1398 |
| SduI | GDGCHC | 2 cut(s) | 140, 1256 |
| SexAI | ACCWGGT | 1 cut(s) | 1396 |
| SfaNI | GCATC | 2 cut(s) | 418, 1206 |
| SfoI | GGCGCC | 1 cut(s) | 571 |
| SinI | GGWCC | 5 cut(s) | 142, 528, 835, 913, 1400 |
| SmlI | CTYRAG | 2 cut(s) | 493, 1357 |
| SmoI | CTYRAG | 2 cut(s) | 493, 1357 |
| SphI | GCATGC | 1 cut(s) | 1154 |
| SseBI | AGGCCT | 1 cut(s) | 843 |
| SsiI | CCGC | 5 cut(s) | 40, 388, 566, 775, 995 |
| SspDI | GGCGCC | 1 cut(s) | 569 |
| SspI | AATATT | 2 cut(s) | 730, 1522 |
| SspMI | CTAG | 3 cut(s) | 84, 264, 1220 |
| StuI | AGGCCT | 1 cut(s) | 843 |
| StyD4I | CCNGG | 5 cut(s) | 61, 138, 230, 552, 1396 |
| StyI | CCWWGG | 1 cut(s) | 838 |
| TaaI | ACNGT | 3 cut(s) | 323, 745, 1371 |
| TaiI | ACGT | 1 cut(s) | 723 |
| TaqI | TCGA | 4 cut(s) | 36, 297, 1100, 1285 |
| TatI | WGTACW | 1 cut(s) | 514 |
| Tru1I | TTAA | 7 cut(s) | 549, 1236, 1301, 1358, 1386, 1392, 1518 |
| Tru9I | TTAA | 7 cut(s) | 549, 1236, 1301, 1358, 1386, 1392, 1518 |
| TscAI | CASTG | 3 cut(s) | 169, 274, 328 |
| TseFI | GTSAC | 1 cut(s) | 327 |
| TseI | GCWGC | 2 cut(s) | 313, 1504 |
| Tsp45I | GTSAC | 1 cut(s) | 327 |
| TspGWI | ACGGA | 2 cut(s) | 143, 408 |
| TspRI | CASTG | 3 cut(s) | 169, 274, 328 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1409 |
| Vha464I | CTTAAG | 1 cut(s) | 1357 |
| VpaK11BI | GGWCC | 5 cut(s) | 142, 528, 835, 913, 1400 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 441 |
| XapI | RAATTY | 9 cut(s) | 30, 45, 100, 158, 420, 1039, 1105, 1120, 1382 |
| XceI | RCATGY | 2 cut(s) | 1150, 1154 |
| XmiI | GTMKAC | 1 cut(s) | 1373 |
| XmnI | GAANNNNTTC | 1 cut(s) | 854 |
| XspI | CTAG | 3 cut(s) | 84, 264, 1220 |
| Zsp2I | ATGCAT | 1 cut(s) | 1152 |