Rorug02G0339200

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
42163062 .. 42163870
809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0339200.1

Sequence Viewer

Length: 597 bp
ATGGAGCTACAAACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACAGATTTCTGGCGAAGCCGTGCCAGGTGGGTTCCTACTCCAGATCAGATAAGGATCCTCAAGGATCTTTACTACGACAAGGGAATTAAGTGCCCAACTACAGAGCACATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGATATGTTGAGGGTAAGAACATTTATTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATCGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGAGGACAAACATCCCTACAACAACGAGGAGGAGATCACCAGGAGGTTGAAACTCTTCCTCTGTTCCCCGTGCACGGCAAGGACGTCTTTGGTAACCCGAAGACTACTTCCGAGGAAGGTAGCGCATTTGGTTACTATTCTGGTGGCTCAGGCGGTTACCACAGTGGCTCAAACGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCTGCTGACTAG

Protein Analysis

198

Amino Acids

21.47

Weight (kDa)

5.72

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 91 1.4e-08 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000452)

Species Orthologous Gene IDs
rosa_rugosa Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 465
AccIII TCCGGA 1 cut(s) 581
AciI CCGC 1 cut(s) 531
AclI AACGTT 1 cut(s) 552
AclWI GGATC 5 cut(s) 118, 131, 141, 330, 343
AcyI GRCGYC 1 cut(s) 462
AfaI GTAC 1 cut(s) 328
AfiI CCNNNNNNNGG 2 cut(s) 329, 452
AgsI TTSAA 1 cut(s) 428
AhlI ACTAGT 1 cut(s) 314
AjnI CCWGG 3 cut(s) 92, 322, 417
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AloI GAACNNNNNNTCC 2 cut(s) 304, 336
AluBI AGCT 4 cut(s) 7, 199, 565, 587
AluI AGCT 4 cut(s) 7, 199, 565, 587
Alw21I GWGCWC 3 cut(s) 177, 453, 567
Alw26I GTCTC 1 cut(s) 197
Alw44I GTGCAC 1 cut(s) 449
AlwI GGATC 5 cut(s) 118, 131, 141, 330, 343
Ama87I CYCGRG 1 cut(s) 261
Aor13HI TCCGGA 1 cut(s) 581
ApaLI GTGCAC 1 cut(s) 449
ApeKI GCWGC 3 cut(s) 50, 293, 587
Asp700I GAANNNNTTC 2 cut(s) 316, 432
AspLEI GCGC 1 cut(s) 503
AspS9I GGNCC 1 cut(s) 357
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 407
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 357
BaeGI GKGCMC 3 cut(s) 164, 306, 453
BamHI GGATCC 2 cut(s) 123, 335
BanII GRGCYC 2 cut(s) 262, 567
BauI CACGAG 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 485
Bbv12I GWGCWC 3 cut(s) 177, 453, 567
BbvI GCAGC 3 cut(s) 62, 280, 574
BccI CCATC 3 cut(s) 26, 347, 586
BceAI ACGGC 2 cut(s) 72, 469
BciT130I CCWGG 3 cut(s) 94, 324, 419
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 1 cut(s) 314
BfaI CTAG 2 cut(s) 315, 595
BfmI CTRYAG 1 cut(s) 168
BglII AGATCT 1 cut(s) 186
BisI GCNGC 3 cut(s) 51, 294, 588
BlpI GCTNAGC 1 cut(s) 566
BlsI GCNGC 3 cut(s) 52, 295, 589
Bme1390I CCNGG 4 cut(s) 55, 94, 324, 419
Bme18I GGWCC 1 cut(s) 357
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 357
BmiI GGNNCC 5 cut(s) 102, 125, 245, 337, 358
BmrFI CCNGG 4 cut(s) 55, 94, 324, 419
BpiI GAAGAC 1 cut(s) 485
BpmI CTGGAG 3 cut(s) 93, 179, 399
Bpu10I CCTNAGC 1 cut(s) 526
Bpu1102I GCTNAGC 1 cut(s) 566
BpuEI CTTGAG 3 cut(s) 113, 282, 581
BpuMI CCSGG 1 cut(s) 55
Bsa29I ATCGAT 1 cut(s) 342
BsaBI GATNNNNATC 1 cut(s) 122
BsaHI GRCGYC 1 cut(s) 462
BsaJI CCNNGG 2 cut(s) 306, 489
BsaWI WCCGGW 1 cut(s) 581
BsaXI ACNNNNNCTCC 2 cut(s) 304, 334
Bsc4I CCNNNNNNNGG 2 cut(s) 329, 452
Bse1I ACTGG 4 cut(s) 205, 334, 367, 376
Bse8I GATNNNNATC 1 cut(s) 122
BseAI TCCGGA 1 cut(s) 581
BseBI CCWGG 3 cut(s) 94, 324, 419
BseCI ATCGAT 1 cut(s) 342
BseDI CCNNGG 2 cut(s) 306, 489
BseGI GGATG 3 cut(s) 37, 389, 578
BseJI GATNNNNATC 1 cut(s) 122
BseLI CCNNNNNNNGG 2 cut(s) 329, 452
BseMII CTCAG 2 cut(s) 540, 580
BseNI ACTGG 4 cut(s) 205, 334, 367, 376
BseRI GAGGAG 2 cut(s) 420, 423
BseSI GKGCMC 3 cut(s) 164, 306, 453
BseXI GCAGC 3 cut(s) 62, 280, 574
BseYI CCCAGC 1 cut(s) 15
BshVI ATCGAT 1 cut(s) 342
BsiHKAI GWGCWC 3 cut(s) 177, 453, 567
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 2 cut(s) 54, 582
BslI CCNNNNNNNGG 2 cut(s) 329, 452
BsmAI GTCTC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 6 cut(s) 164, 177, 262, 306, 453, 567
Bsp13I TCCGGA 1 cut(s) 581
Bsp143I GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 412
Bsp1720I GCTNAGC 1 cut(s) 566
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 1 cut(s) 531
BspCNI CTCAG 2 cut(s) 539, 579
BspDI ATCGAT 1 cut(s) 342
BspEI TCCGGA 1 cut(s) 581
BspLI GGNNCC 5 cut(s) 102, 125, 245, 337, 358
BspPI GGATC 5 cut(s) 118, 131, 141, 330, 343
BsrI ACTGG 4 cut(s) 205, 334, 367, 376
BssECI CCNNGG 2 cut(s) 306, 489
BssMI GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 412
BssNI GRCGYC 1 cut(s) 462
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 3 cut(s) 94, 324, 419
Bst4CI ACNGT 1 cut(s) 542
Bst6I CTCTTC 2 cut(s) 272, 438
BstACI GRCGYC 1 cut(s) 462
BstDEI CTNAG 2 cut(s) 526, 566
BstDSI CCRYGG 1 cut(s) 306
BstEII GGTNACC 2 cut(s) 470, 533
BstF5I GGATG 3 cut(s) 37, 389, 578
BstHHI GCGC 1 cut(s) 503
BstKTI GATC 7 cut(s) 115, 126, 136, 189, 338, 346, 415
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 412
BstNI CCWGG 3 cut(s) 94, 324, 419
BstPI GGTNACC 2 cut(s) 470, 533
BstSCI CCNGG 4 cut(s) 53, 92, 322, 417
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 3 cut(s) 164, 306, 453
BstV1I GCAGC 3 cut(s) 62, 280, 574
BstV2I GAAGAC 1 cut(s) 485
BstX2I RGATCY 4 cut(s) 123, 133, 186, 335
BstYI RGATCY 4 cut(s) 123, 133, 186, 335
Bsu15I ATCGAT 1 cut(s) 342
BsuTUI ATCGAT 1 cut(s) 342
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 3 cut(s) 37, 389, 578
BtsIMutI CAGTG 2 cut(s) 360, 547
CfoI GCGC 1 cut(s) 503
Cfr13I GGNCC 1 cut(s) 357
ClaI ATCGAT 1 cut(s) 342
Csp6I GTAC 1 cut(s) 327
CviAII CATG 1 cut(s) 307
CviQI GTAC 1 cut(s) 327
DdeI CTNAG 2 cut(s) 526, 566
DpnI GATC 7 cut(s) 114, 125, 135, 188, 337, 345, 414
DpnII GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 412
Eam1104I CTCTTC 2 cut(s) 272, 438
EarI CTCTTC 2 cut(s) 272, 438
Ecl136II GAGCTC 1 cut(s) 565
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 2 cut(s) 262, 567
Eco47I GGWCC 1 cut(s) 357
Eco53kI GAGCTC 1 cut(s) 565
Eco88I CYCGRG 1 cut(s) 261
Eco91I GGTNACC 2 cut(s) 470, 533
EcoICRI GAGCTC 1 cut(s) 565
EcoO65I GGTNACC 2 cut(s) 470, 533
EcoRII CCWGG 3 cut(s) 92, 322, 417
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 2 cut(s) 262, 567
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 1 cut(s) 310
FaiI YATR 3 cut(s) 210, 216, 308
FalI AAGNNNNNCTT 2 cut(s) 449, 481
FatI CATG 1 cut(s) 306
Fnu4HI GCNGC 3 cut(s) 51, 294, 588
FokI GGATG 3 cut(s) 44, 376, 565
FriOI GRGCYC 2 cut(s) 262, 567
Fsp4HI GCNGC 3 cut(s) 51, 294, 588
FspBI CTAG 2 cut(s) 315, 595
GlaI GCGC 1 cut(s) 502
GluI GCNGC 3 cut(s) 51, 294, 588
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 3 cut(s) 93, 179, 399
HapII CCGG 2 cut(s) 54, 582
HhaI GCGC 1 cut(s) 503
Hin1I GRCGYC 1 cut(s) 462
Hin1II CATG 1 cut(s) 310
Hin6I GCGC 1 cut(s) 501
HinP1I GCGC 1 cut(s) 501
HpaII CCGG 2 cut(s) 54, 582
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 2 cut(s) 360, 451
Hpy188I TCNGA 2 cut(s) 117, 490
Hpy188III TCNNGA 6 cut(s) 110, 182, 247, 263, 560, 582
Hpy8I GTNNAC 2 cut(s) 360, 451
HpyAV CCTTC 1 cut(s) 488
HpyCH4III ACNGT 1 cut(s) 542
HpyCH4IV ACGT 3 cut(s) 252, 462, 552
HpyCH4V TGCA 2 cut(s) 285, 451
HpyF3I CTNAG 2 cut(s) 526, 566
HpySE526I ACGT 3 cut(s) 252, 462, 552
Hsp92I GRCGYC 1 cut(s) 462
Hsp92II CATG 1 cut(s) 310
HspAI GCGC 1 cut(s) 501
Kpn2I TCCGGA 1 cut(s) 581
Kzo9I GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 412
LmnI GCTCC 2 cut(s) 4, 584
Lsp1109I GCAGC 3 cut(s) 62, 280, 574
MaeI CTAG 2 cut(s) 315, 595
MaeII ACGT 3 cut(s) 252, 462, 552
MaeIII GTNAC 3 cut(s) 470, 509, 533
MalI GATC 7 cut(s) 114, 125, 135, 188, 337, 345, 414
MboI GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 412
MboII GAAGA 3 cut(s) 289, 425, 490
MflI RGATCY 4 cut(s) 123, 133, 186, 335
MhlI GDGCHC 6 cut(s) 164, 177, 262, 306, 453, 567
MluCI AATT 2 cut(s) 153, 349
MroI TCCGGA 1 cut(s) 581
MroXI GAANNNNTTC 2 cut(s) 316, 432
MseI TTAA 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 199
MspI CCGG 2 cut(s) 54, 582
MspR9I CCNGG 4 cut(s) 55, 94, 324, 419
MvaI CCWGG 3 cut(s) 94, 324, 419
NciI CCSGG 1 cut(s) 55
NcoI CCATGG 1 cut(s) 306
NdeII GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 412
NlaIII CATG 1 cut(s) 310
NlaIV GGNNCC 5 cut(s) 102, 125, 245, 337, 358
PaeR7I CTCGAG 1 cut(s) 261
PcsI WCGNNNNNNNCGW 1 cut(s) 459
PdmI GAANNNNTTC 2 cut(s) 316, 432
PkrI GCNGC 3 cut(s) 52, 295, 589
Psp124BI GAGCTC 1 cut(s) 567
Psp1406I AACGTT 1 cut(s) 552
Psp6I CCWGG 3 cut(s) 92, 322, 417
PspEI GGTNACC 2 cut(s) 470, 533
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 3 cut(s) 92, 322, 417
PspN4I GGNNCC 5 cut(s) 102, 125, 245, 337, 358
PspPI GGNCC 1 cut(s) 357
PsuI RGATCY 4 cut(s) 123, 133, 186, 335
PvuII CAGCTG 1 cut(s) 199
RsaI GTAC 1 cut(s) 328
RsaNI GTAC 1 cut(s) 327
SacI GAGCTC 1 cut(s) 567
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 3 cut(s) 51, 294, 588
Sau3AI GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 412
Sau96I GGNCC 1 cut(s) 357
ScrFI CCNGG 4 cut(s) 55, 94, 324, 419
SduI GDGCHC 6 cut(s) 164, 177, 262, 306, 453, 567
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 357
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 4 cut(s) 128, 261, 297, 560
SmoI CTYRAG 4 cut(s) 128, 261, 297, 560
SpeI ACTAGT 1 cut(s) 314
Sse9I AATT 2 cut(s) 153, 349
SsiI CCGC 1 cut(s) 531
SspMI CTAG 2 cut(s) 315, 595
SstI GAGCTC 1 cut(s) 567
StyD4I CCNGG 4 cut(s) 53, 92, 322, 417
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 1 cut(s) 542
TaiI ACGT 3 cut(s) 255, 465, 555
TaqI TCGA 3 cut(s) 27, 262, 342
TasI AATT 2 cut(s) 153, 349
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 2 cut(s) 367, 547
TseI GCWGC 3 cut(s) 50, 293, 587
TspDTI ATGAA 1 cut(s) 290
TspRI CASTG 2 cut(s) 367, 547
VneI GTGCAC 1 cut(s) 449
VpaK11BI GGWCC 1 cut(s) 357
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 2 cut(s) 316, 432
XspI CTAG 2 cut(s) 315, 595
ZraI GACGTC 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.