Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 246 |
| AfaI | GTAC | 1 cut(s) | 191 |
| AflIII | ACRYGT | 1 cut(s) | 154 |
| AleI | CACNNNNGTG | 1 cut(s) | 32 |
| AluBI | AGCT | 2 cut(s) | 82, 208 |
| AluI | AGCT | 2 cut(s) | 82, 208 |
| Alw26I | GTCTC | 2 cut(s) | 57, 314 |
| AoxI | GGCC | 1 cut(s) | 246 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 123 |
| AsuHPI | GGTGA | 2 cut(s) | 254, 283 |
| AsuII | TTCGAA | 1 cut(s) | 279 |
| BalI | TGGCCA | 1 cut(s) | 248 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 182, 216 |
| BclI | TGATCA | 1 cut(s) | 57 |
| BcoDI | GTCTC | 2 cut(s) | 57, 314 |
| BfaI | CTAG | 1 cut(s) | 328 |
| BlpI | GCTNAGC | 2 cut(s) | 83, 204 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 83, 204 |
| Bpu14I | TTCGAA | 1 cut(s) | 279 |
| BsaI | GGTCTC | 2 cut(s) | 57, 314 |
| Bse118I | RCCGGY | 1 cut(s) | 293 |
| Bse1I | ACTGG | 1 cut(s) | 97 |
| BseMII | CTCAG | 2 cut(s) | 97, 177 |
| BseNI | ACTGG | 1 cut(s) | 97 |
| BseRI | GAGGAG | 1 cut(s) | 209 |
| BshFI | GGCC | 1 cut(s) | 248 |
| BsiSI | CCGG | 1 cut(s) | 294 |
| BsmAI | GTCTC | 2 cut(s) | 57, 314 |
| BsnI | GGCC | 1 cut(s) | 248 |
| Bso31I | GGTCTC | 2 cut(s) | 57, 314 |
| Bsp119I | TTCGAA | 1 cut(s) | 279 |
| Bsp143I | GATC | 1 cut(s) | 57 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 83, 204 |
| BspANI | GGCC | 1 cut(s) | 248 |
| BspCNI | CTCAG | 2 cut(s) | 96, 178 |
| BspT104I | TTCGAA | 1 cut(s) | 279 |
| BspTNI | GGTCTC | 2 cut(s) | 57, 314 |
| BsrFI | RCCGGY | 1 cut(s) | 293 |
| BsrI | ACTGG | 1 cut(s) | 97 |
| BssAI | RCCGGY | 1 cut(s) | 293 |
| BssMI | GATC | 1 cut(s) | 57 |
| Bst4CI | ACNGT | 3 cut(s) | 34, 266, 308 |
| BstBI | TTCGAA | 1 cut(s) | 279 |
| BstDEI | CTNAG | 3 cut(s) | 83, 186, 204 |
| BstKTI | GATC | 1 cut(s) | 60 |
| BstMAI | GTCTC | 2 cut(s) | 57, 314 |
| BstMBI | GATC | 1 cut(s) | 57 |
| BsuRI | GGCC | 1 cut(s) | 248 |
| BtsIMutI | CAGTG | 1 cut(s) | 39 |
| Cfr10I | RCCGGY | 1 cut(s) | 293 |
| Csp6I | GTAC | 1 cut(s) | 190 |
| CviJI | RGCY | 5 cut(s) | 15, 82, 87, 208, 248 |
| CviKI_1 | RGCY | 5 cut(s) | 15, 82, 87, 208, 248 |
| CviQI | GTAC | 1 cut(s) | 190 |
| DdeI | CTNAG | 3 cut(s) | 83, 186, 204 |
| DpnI | GATC | 1 cut(s) | 59 |
| DpnII | GATC | 1 cut(s) | 57 |
| EaeI | YGGCCR | 1 cut(s) | 246 |
| Eco31I | GGTCTC | 2 cut(s) | 57, 314 |
| FaiI | YATR | 3 cut(s) | 46, 77, 201 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 125, 157 |
| FbaI | TGATCA | 1 cut(s) | 57 |
| FspBI | CTAG | 1 cut(s) | 328 |
| HaeIII | GGCC | 1 cut(s) | 248 |
| HapII | CCGG | 1 cut(s) | 294 |
| HindIII | AAGCTT | 1 cut(s) | 206 |
| HpaII | CCGG | 1 cut(s) | 294 |
| HphI | GGTGA | 2 cut(s) | 254, 283 |
| Hpy188I | TCNGA | 3 cut(s) | 57, 62, 70 |
| Hpy188III | TCNNGA | 1 cut(s) | 146 |
| HpyAV | CCTTC | 1 cut(s) | 134 |
| HpyCH4III | ACNGT | 3 cut(s) | 34, 266, 308 |
| HpyCH4IV | ACGT | 1 cut(s) | 156 |
| HpyCH4V | TGCA | 2 cut(s) | 27, 172 |
| HpyF3I | CTNAG | 3 cut(s) | 83, 186, 204 |
| HpySE526I | ACGT | 1 cut(s) | 156 |
| Ksp22I | TGATCA | 1 cut(s) | 57 |
| Kzo9I | GATC | 1 cut(s) | 57 |
| LpnPI | CCDG | 4 cut(s) | 110, 131, 198, 307 |
| MaeI | CTAG | 1 cut(s) | 328 |
| MaeII | ACGT | 1 cut(s) | 156 |
| MaeIII | GTNAC | 3 cut(s) | 254, 266, 302 |
| MalI | GATC | 1 cut(s) | 59 |
| MboI | GATC | 1 cut(s) | 57 |
| MlsI | TGGCCA | 1 cut(s) | 248 |
| MluCI | AATT | 1 cut(s) | 224 |
| MluNI | TGGCCA | 1 cut(s) | 248 |
| MmeI | TCCRAC | 2 cut(s) | 93, 126 |
| MnlI | CCTC | 4 cut(s) | 42, 98, 187, 270 |
| Mox20I | TGGCCA | 1 cut(s) | 248 |
| MroXI | GAANNNNTTC | 1 cut(s) | 123 |
| MscI | TGGCCA | 1 cut(s) | 248 |
| MseI | TTAA | 1 cut(s) | 273 |
| MslI | CAYNNNNRTG | 2 cut(s) | 32, 114 |
| Msp20I | TGGCCA | 1 cut(s) | 248 |
| MspI | CCGG | 1 cut(s) | 294 |
| NdeII | GATC | 1 cut(s) | 57 |
| NmuCI | GTSAC | 1 cut(s) | 254 |
| NspV | TTCGAA | 1 cut(s) | 279 |
| OliI | CACNNNNGTG | 1 cut(s) | 32 |
| PdmI | GAANNNNTTC | 1 cut(s) | 123 |
| RsaI | GTAC | 1 cut(s) | 191 |
| RsaNI | GTAC | 1 cut(s) | 190 |
| RseI | CAYNNNNRTG | 2 cut(s) | 32, 114 |
| SaqAI | TTAA | 1 cut(s) | 273 |
| Sau3AI | GATC | 1 cut(s) | 57 |
| SetI | ASST | 6 cut(s) | 53, 84, 126, 159, 210, 273 |
| SfuI | TTCGAA | 1 cut(s) | 279 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 32, 114 |
| Sse9I | AATT | 1 cut(s) | 224 |
| SspMI | CTAG | 1 cut(s) | 328 |
| TaaI | ACNGT | 3 cut(s) | 34, 266, 308 |
| TaiI | ACGT | 1 cut(s) | 159 |
| TaqI | TCGA | 1 cut(s) | 279 |
| TasI | AATT | 1 cut(s) | 224 |
| Tru1I | TTAA | 1 cut(s) | 273 |
| Tru9I | TTAA | 1 cut(s) | 273 |
| TscAI | CASTG | 1 cut(s) | 39 |
| TseFI | GTSAC | 1 cut(s) | 254 |
| Tsp45I | GTSAC | 1 cut(s) | 254 |
| TspDTI | ATGAA | 3 cut(s) | 64, 132, 217 |
| TspRI | CASTG | 1 cut(s) | 39 |
| XmnI | GAANNNNTTC | 1 cut(s) | 123 |
| XspI | CTAG | 1 cut(s) | 328 |