Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 400 |
| AccB1I | GGYRCC | 2 cut(s) | 742, 782 |
| AccI | GTMKAC | 1 cut(s) | 842 |
| AccIII | TCCGGA | 1 cut(s) | 259 |
| AciI | CCGC | 5 cut(s) | 168, 281, 347, 480, 683 |
| AcoI | YGGCCR | 1 cut(s) | 278 |
| AfaI | GTAC | 1 cut(s) | 755 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 37, 244, 283, 485, 492, 619, 668, 792 |
| AgsI | TTSAA | 2 cut(s) | 133, 416 |
| AjnI | CCWGG | 1 cut(s) | 612 |
| AluBI | AGCT | 6 cut(s) | 34, 57, 67, 150, 453, 505 |
| AluI | AGCT | 6 cut(s) | 34, 57, 67, 150, 453, 505 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 625 |
| Aor13HI | TCCGGA | 1 cut(s) | 259 |
| AoxI | GGCC | 2 cut(s) | 278, 438 |
| ApeKI | GCWGC | 4 cut(s) | 67, 309, 482, 529 |
| AspA2I | CCTAGG | 1 cut(s) | 241 |
| AspLEI | GCGC | 1 cut(s) | 403 |
| AspS9I | GGNCC | 1 cut(s) | 28 |
| AsuC2I | CCSGG | 2 cut(s) | 277, 728 |
| AsuHPI | GGTGA | 2 cut(s) | 534, 789 |
| AvaII | GGWCC | 1 cut(s) | 28 |
| AvrII | CCTAGG | 1 cut(s) | 241 |
| AxyI | CCTNAGG | 1 cut(s) | 663 |
| BanI | GGYRCC | 2 cut(s) | 742, 782 |
| BanII | GRGCYC | 1 cut(s) | 303 |
| BbvI | GCAGC | 4 cut(s) | 54, 321, 469, 541 |
| BccI | CCATC | 3 cut(s) | 580, 671, 742 |
| BciT130I | CCWGG | 1 cut(s) | 614 |
| BciVI | GTATCC | 1 cut(s) | 584 |
| BclI | TGATCA | 1 cut(s) | 112 |
| BcnI | CCSGG | 2 cut(s) | 277, 728 |
| BfaI | CTAG | 1 cut(s) | 242 |
| BfmI | CTRYAG | 1 cut(s) | 527 |
| BfuAI | ACCTGC | 1 cut(s) | 400 |
| BfuI | GTATCC | 1 cut(s) | 584 |
| BisI | GCNGC | 5 cut(s) | 68, 281, 310, 483, 530 |
| BlnI | CCTAGG | 1 cut(s) | 241 |
| BlsI | GCNGC | 5 cut(s) | 69, 282, 311, 484, 531 |
| Bme1390I | CCNGG | 3 cut(s) | 277, 614, 728 |
| Bme18I | GGWCC | 1 cut(s) | 28 |
| BmgT120I | GGNCC | 1 cut(s) | 28 |
| BmiI | GGNNCC | 3 cut(s) | 602, 744, 784 |
| BmrFI | CCNGG | 3 cut(s) | 277, 614, 728 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 46, 78 |
| BpuMI | CCSGG | 2 cut(s) | 277, 728 |
| BsaBI | GATNNNNATC | 1 cut(s) | 114 |
| BsaJI | CCNNGG | 2 cut(s) | 241, 727 |
| BsaWI | WCCGGW | 2 cut(s) | 259, 845 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 37, 244, 283, 485, 492, 619, 668, 792 |
| Bse118I | RCCGGY | 3 cut(s) | 283, 440, 799 |
| Bse21I | CCTNAGG | 1 cut(s) | 663 |
| Bse8I | GATNNNNATC | 1 cut(s) | 114 |
| BseAI | TCCGGA | 1 cut(s) | 259 |
| BseBI | CCWGG | 1 cut(s) | 614 |
| BseDI | CCNNGG | 2 cut(s) | 241, 727 |
| BseJI | GATNNNNATC | 1 cut(s) | 114 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 37, 244, 283, 485, 492, 619, 668, 792 |
| BseMII | CTCAG | 7 cut(s) | 77, 302, 449, 534, 582, 654, 710 |
| BseRI | GAGGAG | 5 cut(s) | 310, 508, 684, 687, 721 |
| BseX3I | CGGCCG | 1 cut(s) | 278 |
| BseXI | GCAGC | 4 cut(s) | 54, 321, 469, 541 |
| BseYI | CCCAGC | 1 cut(s) | 505 |
| BsgI | GTGCAG | 2 cut(s) | 590, 744 |
| Bsh1285I | CGRYCG | 2 cut(s) | 281, 846 |
| BshFI | GGCC | 2 cut(s) | 280, 440 |
| BshNI | GGYRCC | 2 cut(s) | 742, 782 |
| BsiEI | CGRYCG | 2 cut(s) | 281, 846 |
| BsiSI | CCGG | 8 cut(s) | 260, 277, 284, 441, 486, 727, 800, 846 |
| BslFI | GGGAC | 3 cut(s) | 64, 221, 242 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 37, 244, 283, 485, 492, 619, 668, 792 |
| BsmFI | GGGAC | 3 cut(s) | 64, 221, 242 |
| BsnI | GGCC | 2 cut(s) | 280, 440 |
| Bsp1286I | GDGCHC | 1 cut(s) | 303 |
| Bsp13I | TCCGGA | 1 cut(s) | 259 |
| Bsp143I | GATC | 1 cut(s) | 112 |
| BspACI | CCGC | 5 cut(s) | 168, 281, 347, 480, 683 |
| BspANI | GGCC | 2 cut(s) | 280, 440 |
| BspCNI | CTCAG | 7 cut(s) | 76, 301, 448, 533, 581, 655, 711 |
| BspEI | TCCGGA | 1 cut(s) | 259 |
| BspHI | TCATGA | 1 cut(s) | 577 |
| BspLI | GGNNCC | 3 cut(s) | 602, 744, 784 |
| BspMAI | CTGCAG | 1 cut(s) | 531 |
| BspMI | ACCTGC | 1 cut(s) | 400 |
| BspT107I | GGYRCC | 2 cut(s) | 742, 782 |
| BsrFI | RCCGGY | 3 cut(s) | 283, 440, 799 |
| BssAI | RCCGGY | 3 cut(s) | 283, 440, 799 |
| BssECI | CCNNGG | 2 cut(s) | 241, 727 |
| BssMI | GATC | 1 cut(s) | 112 |
| BssT1I | CCWWGG | 1 cut(s) | 241 |
| Bst2UI | CCWGG | 1 cut(s) | 614 |
| Bst4CI | ACNGT | 1 cut(s) | 782 |
| BstC8I | GCNNGC | 5 cut(s) | 285, 424, 480, 650, 814 |
| BstDEI | CTNAG | 8 cut(s) | 63, 288, 435, 456, 520, 568, 663, 719 |
| BstEII | GGTNACC | 1 cut(s) | 795 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 666 |
| BstHHI | GCGC | 1 cut(s) | 403 |
| BstKTI | GATC | 1 cut(s) | 115 |
| BstMBI | GATC | 1 cut(s) | 112 |
| BstMCI | CGRYCG | 2 cut(s) | 281, 846 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 767, 809 |
| BstNI | CCWGG | 1 cut(s) | 614 |
| BstNSI | RCATGY | 1 cut(s) | 309 |
| BstPI | GGTNACC | 1 cut(s) | 795 |
| BstSCI | CCNGG | 3 cut(s) | 275, 612, 726 |
| BstSFI | CTRYAG | 1 cut(s) | 527 |
| BstV1I | GCAGC | 4 cut(s) | 54, 321, 469, 541 |
| BstZI | CGGCCG | 1 cut(s) | 278 |
| Bsu36I | CCTNAGG | 1 cut(s) | 663 |
| BsuI | GTATCC | 1 cut(s) | 584 |
| BsuRI | GGCC | 2 cut(s) | 280, 440 |
| BtgZI | GCGATG | 1 cut(s) | 599 |
| BtsI | GCAGTG | 2 cut(s) | 524, 756 |
| BtsIMutI | CAGTG | 3 cut(s) | 524, 576, 756 |
| BveI | ACCTGC | 1 cut(s) | 400 |
| Cac8I | GCNNGC | 5 cut(s) | 285, 424, 480, 650, 814 |
| CaiI | CAGNNNCTG | 1 cut(s) | 625 |
| CciI | TCATGA | 1 cut(s) | 577 |
| CfoI | GCGC | 1 cut(s) | 403 |
| Cfr10I | RCCGGY | 3 cut(s) | 283, 440, 799 |
| Cfr13I | GGNCC | 1 cut(s) | 28 |
| CsiI | ACCWGGT | 1 cut(s) | 612 |
| Csp6I | GTAC | 1 cut(s) | 754 |
| CviAII | CATG | 3 cut(s) | 86, 306, 578 |
| CviQI | GTAC | 1 cut(s) | 754 |
| DdeI | CTNAG | 8 cut(s) | 63, 288, 435, 456, 520, 568, 663, 719 |
| DpnI | GATC | 1 cut(s) | 114 |
| DpnII | GATC | 1 cut(s) | 112 |
| EaeI | YGGCCR | 1 cut(s) | 278 |
| EagI | CGGCCG | 1 cut(s) | 278 |
| EciI | GGCGGA | 2 cut(s) | 157, 698 |
| EclXI | CGGCCG | 1 cut(s) | 278 |
| Eco130I | CCWWGG | 1 cut(s) | 241 |
| Eco24I | GRGCYC | 1 cut(s) | 303 |
| Eco47I | GGWCC | 1 cut(s) | 28 |
| Eco52I | CGGCCG | 1 cut(s) | 278 |
| Eco81I | CCTNAGG | 1 cut(s) | 663 |
| Eco91I | GGTNACC | 1 cut(s) | 795 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 666 |
| EcoO65I | GGTNACC | 1 cut(s) | 795 |
| EcoRII | CCWGG | 1 cut(s) | 612 |
| EcoT14I | CCWWGG | 1 cut(s) | 241 |
| EcoT38I | GRGCYC | 1 cut(s) | 303 |
| ErhI | CCWWGG | 1 cut(s) | 241 |
| FaeI | CATG | 3 cut(s) | 89, 309, 581 |
| FaiI | YATR | 5 cut(s) | 44, 87, 307, 579, 637 |
| FaqI | GGGAC | 3 cut(s) | 64, 221, 242 |
| FatI | CATG | 3 cut(s) | 85, 305, 577 |
| FauI | CCCGC | 1 cut(s) | 487 |
| FbaI | TGATCA | 1 cut(s) | 112 |
| FblI | GTMKAC | 1 cut(s) | 842 |
| Fnu4HI | GCNGC | 5 cut(s) | 68, 281, 310, 483, 530 |
| FriOI | GRGCYC | 1 cut(s) | 303 |
| Fsp4HI | GCNGC | 5 cut(s) | 68, 281, 310, 483, 530 |
| FspBI | CTAG | 1 cut(s) | 242 |
| GlaI | GCGC | 1 cut(s) | 402 |
| GluI | GCNGC | 5 cut(s) | 68, 281, 310, 483, 530 |
| GsaI | CCCAGC | 1 cut(s) | 509 |
| HaeIII | GGCC | 2 cut(s) | 280, 440 |
| HapII | CCGG | 8 cut(s) | 260, 277, 284, 441, 486, 727, 800, 846 |
| HhaI | GCGC | 1 cut(s) | 403 |
| Hin1II | CATG | 3 cut(s) | 89, 309, 581 |
| Hin6I | GCGC | 1 cut(s) | 401 |
| HinP1I | GCGC | 1 cut(s) | 401 |
| HincII | GTYRAC | 1 cut(s) | 843 |
| HindII | GTYRAC | 1 cut(s) | 843 |
| HinfI | GANTC | 2 cut(s) | 314, 516 |
| HpaII | CCGG | 8 cut(s) | 260, 277, 284, 441, 486, 727, 800, 846 |
| HphI | GGTGA | 2 cut(s) | 534, 789 |
| Hpy166II | GTNNAC | 3 cut(s) | 28, 756, 843 |
| Hpy188I | TCNGA | 4 cut(s) | 216, 291, 381, 447 |
| Hpy188III | TCNNGA | 2 cut(s) | 260, 578 |
| Hpy8I | GTNNAC | 3 cut(s) | 28, 756, 843 |
| Hpy99I | CGWCG | 1 cut(s) | 844 |
| HpyAV | CCTTC | 3 cut(s) | 41, 663, 685 |
| HpyCH4III | ACNGT | 1 cut(s) | 782 |
| HpyCH4V | TGCA | 5 cut(s) | 309, 422, 529, 607, 761 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 767, 809 |
| HpyF3I | CTNAG | 8 cut(s) | 63, 288, 435, 456, 520, 568, 663, 719 |
| Hsp92II | CATG | 3 cut(s) | 89, 309, 581 |
| HspAI | GCGC | 1 cut(s) | 401 |
| Kpn2I | TCCGGA | 1 cut(s) | 259 |
| KroI | GCCGGC | 1 cut(s) | 283 |
| KroNI | GCCGGC | 1 cut(s) | 285 |
| Ksp22I | TGATCA | 1 cut(s) | 112 |
| Kzo9I | GATC | 1 cut(s) | 112 |
| Lsp1109I | GCAGC | 4 cut(s) | 54, 321, 469, 541 |
| MabI | ACCWGGT | 1 cut(s) | 612 |
| MaeI | CTAG | 1 cut(s) | 242 |
| MaeIII | GTNAC | 1 cut(s) | 795 |
| MalI | GATC | 1 cut(s) | 114 |
| MboI | GATC | 1 cut(s) | 112 |
| MboII | GAAGA | 6 cut(s) | 121, 321, 348, 394, 700, 710 |
| MhlI | GDGCHC | 1 cut(s) | 303 |
| MluCI | AATT | 1 cut(s) | 249 |
| MroI | TCCGGA | 1 cut(s) | 259 |
| MroNI | GCCGGC | 1 cut(s) | 283 |
| MseI | TTAA | 1 cut(s) | 180 |
| MspA1I | CMGCKG | 3 cut(s) | 67, 150, 482 |
| MspI | CCGG | 8 cut(s) | 260, 277, 284, 441, 486, 727, 800, 846 |
| MspR9I | CCNGG | 3 cut(s) | 277, 614, 728 |
| MvaI | CCWGG | 1 cut(s) | 614 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 767, 809 |
| NaeI | GCCGGC | 1 cut(s) | 285 |
| NciI | CCSGG | 2 cut(s) | 277, 728 |
| NdeII | GATC | 1 cut(s) | 112 |
| NgoMIV | GCCGGC | 1 cut(s) | 283 |
| NlaIII | CATG | 3 cut(s) | 89, 309, 581 |
| NlaIV | GGNNCC | 3 cut(s) | 602, 744, 784 |
| NmuCI | GTSAC | 1 cut(s) | 795 |
| NspI | RCATGY | 1 cut(s) | 309 |
| PagI | TCATGA | 1 cut(s) | 577 |
| PdiI | GCCGGC | 1 cut(s) | 285 |
| PfeI | GAWTC | 2 cut(s) | 314, 516 |
| PkrI | GCNGC | 5 cut(s) | 69, 282, 311, 484, 531 |
| Psp6I | CCWGG | 1 cut(s) | 612 |
| PspEI | GGTNACC | 1 cut(s) | 795 |
| PspFI | CCCAGC | 1 cut(s) | 505 |
| PspGI | CCWGG | 1 cut(s) | 612 |
| PspN4I | GGNNCC | 3 cut(s) | 602, 744, 784 |
| PspPI | GGNCC | 1 cut(s) | 28 |
| PstI | CTGCAG | 1 cut(s) | 531 |
| PstNI | CAGNNNCTG | 1 cut(s) | 625 |
| PvuII | CAGCTG | 2 cut(s) | 67, 150 |
| RsaI | GTAC | 1 cut(s) | 755 |
| RsaNI | GTAC | 1 cut(s) | 754 |
| SalI | GTCGAC | 1 cut(s) | 841 |
| SaqAI | TTAA | 1 cut(s) | 180 |
| SatI | GCNGC | 5 cut(s) | 68, 281, 310, 483, 530 |
| Sau3AI | GATC | 1 cut(s) | 112 |
| Sau96I | GGNCC | 1 cut(s) | 28 |
| ScrFI | CCNGG | 3 cut(s) | 277, 614, 728 |
| SduI | GDGCHC | 1 cut(s) | 303 |
| SexAI | ACCWGGT | 1 cut(s) | 612 |
| SfcI | CTRYAG | 1 cut(s) | 527 |
| SinI | GGWCC | 1 cut(s) | 28 |
| Sse9I | AATT | 1 cut(s) | 249 |
| SsiI | CCGC | 5 cut(s) | 168, 281, 347, 480, 683 |
| SspMI | CTAG | 1 cut(s) | 242 |
| StyD4I | CCNGG | 3 cut(s) | 275, 612, 726 |
| StyI | CCWWGG | 1 cut(s) | 241 |
| TaaI | ACNGT | 1 cut(s) | 782 |
| TaqI | TCGA | 3 cut(s) | 81, 269, 842 |
| TasI | AATT | 1 cut(s) | 249 |
| TatI | WGTACW | 1 cut(s) | 753 |
| TauI | GCSGC | 1 cut(s) | 283 |
| TfiI | GAWTC | 2 cut(s) | 314, 516 |
| Tru1I | TTAA | 1 cut(s) | 180 |
| Tru9I | TTAA | 1 cut(s) | 180 |
| TscAI | CASTG | 3 cut(s) | 531, 576, 763 |
| TseFI | GTSAC | 1 cut(s) | 795 |
| TseI | GCWGC | 4 cut(s) | 67, 309, 482, 529 |
| Tsp45I | GTSAC | 1 cut(s) | 795 |
| TspDTI | ATGAA | 3 cut(s) | 566, 594, 645 |
| TspGWI | ACGGA | 1 cut(s) | 485 |
| TspRI | CASTG | 3 cut(s) | 531, 576, 763 |
| VpaK11BI | GGWCC | 1 cut(s) | 28 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 666 |
| XceI | RCATGY | 1 cut(s) | 309 |
| XmaJI | CCTAGG | 1 cut(s) | 241 |
| XmiI | GTMKAC | 1 cut(s) | 842 |
| XspI | CTAG | 1 cut(s) | 242 |